mRNA_H-paniculata_contig61293.13833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61293.13833.1
Unique NamemRNA_H-paniculata_contig61293.13833.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO)

HSP 1 Score: 223 bits (567), Expect = 1.620e-62
Identity = 123/276 (44.57%), Postives = 180/276 (65.22%), Query Frame = 1
Query:    4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            K IF+RK+K DG+V +YKARLV QGF Q EG DFF T APVAR+ST+R + +LAA H+  +  MDV  A+LN  ++EE+++K P  F  P  +   V +L KSLYGLKQ+ + W+   D+ ++  G   +  D CLY   D  G+  +++ +YVDD++I G  +++VDE K  +S +F MKD+G    ILGI+++  R N+ I+ISQ   I ++L+++ F +C  V TPID  +K+L  +G + +  E    +GSLMYA   TRPDIAYAV + +R
Sbjct:  585 KMIFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENK-VCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYSKFDTHGKG-VIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIK--RGNNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLLPNKGVAVSQLEYSRAIGSLMYAMISTRPDIAYAVAKLSR 856          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 217 bits (553), Expect = 2.990e-62
Identity = 119/279 (42.65%), Postives = 183/279 (65.59%), Query Frame = 1
Query:    1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPID--RKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            +KW+F+ K   DG+V  +KARLVAQGFSQ  G+D+ +T +PVAR  ++RTV +LAA+H  +L  MDV  A+LN  ++EE+++K    F    ++   V RLR+S+YGLKQS R WN+ LD  L  MG   +T D C+Y  +++GGE ++ +AVYVDD+++AG+ + K++E+K  ++++F+MKD+G L   LG++V P   +  I I Q +  + VL+R+G +  +   TP++   K+K  A + +  +    +  VG L+Y ST TRPDIAYAV   AR
Sbjct:   28 SKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEH-LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVAR 303          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A2U1QL30_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QL30_ARTAN)

HSP 1 Score: 221 bits (563), Expect = 6.090e-62
Identity = 118/276 (42.75%), Postives = 180/276 (65.22%), Query Frame = 1
Query:    4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAG-RREKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            KWIFKRK+K DG++ +YKARLV QGF Q EG D+F T APVAR+ST+R + +LAA H+  +  MDV  A+LN  ++EE+++K P  F  P  +   V +L KSLYGLKQ+ + W+   D+ ++  G   +  D C+Y S+ +     +++ +YVDD++I G  +++V+E K  +S +F MKD+G    ILGI++   R N  I+ISQ   I ++L ++ F +C  + TP+D ++K+L  +G++ +  E    +GSLMYA   TRPDIAYAV + +R
Sbjct:  870 KWIFKRKMKVDGTIDKYKARLVIQGFRQKEGIDYFDTYAPVARISTIRLLLALAAIHNLVIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGHENK-VCKLVKSLYGLKQAPKQWHQKFDEIVLSNGFVLNQADKCVY-SKFEDSRNGVIICLYVDDMLIFGTNQDQVNETKEFLSSKFAMKDMGEAEVILGIKII--RENKGISISQSHYIEKILDKFNFKDCSPIGTPMDPQLKLLPNKGKAVSQLEYSKRIGSLMYAMISTRPDIAYAVGKLSR 1141          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 214 bits (545), Expect = 2.350e-61
Identity = 112/278 (40.29%), Postives = 180/278 (64.75%), Query Frame = 1
Query:    4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAP--EGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            KW+FK K   DGS+ R+KARLVAQGFSQ  G D+ +T +PV R  ++RTV +L+ +   +L  MDV AA+LN  +E+E+++K P  F    ++     +L KSLYGLKQS R WN+ LD+ L  +G   + +D C+Y   +DG     +VA++VDD+++AG+  EK+ ++K +I++RF++KD+G L  ILG++V  +  +  + I Q +    ++++YG + C+ V TP+D   K+++   +    N  E++  VGSL+Y S+ TRPDI +AV+  A+
Sbjct:  193 KWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGN--IFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAK 465          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A6L2LWU7_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LWU7_TANCI)

HSP 1 Score: 209 bits (532), Expect = 1.050e-60
Identity = 113/273 (41.39%), Postives = 169/273 (61.90%), Query Frame = 1
Query:    4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQ 819
            KWI KRK+K DGS+ +YKARLV QGF + EG +FF T APVAR++T+R + +L A HD  +  MDV  A+LN  ++EE+++K P  F     +   V +L+KSLYGLKQ+ + W+   D+ ++  G   +  D C+Y   DD G   +++ +YVDD++I G  +++VD+ K  +S +F MKDLG    ILGI ++  R N+ I++SQ   I ++L ++ F  C  V TP+D  V   +  G   +  E    +G LMYA   TRPDIA+A+ +
Sbjct:  134 KWILKRKIKVDGSIDKYKARLVIQGFRRKEGIEFFDTYAPVARITTIRLLLALTAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFVMSGYENK-VCKLKKSLYGLKQALKQWHQKFDEVVLSNGFSLNQADKCVYSRFDDSGNG-VIIYLYVDDMLIFGTDQDQVDKTKELLSSKFDMKDLGEAEVILGIRIK--RGNNGISVSQSHYIEKILAKFNFANCSPVSTPVDPTVMFRSNNGTPVSQLEYSRAIGCLMYAMISTRPDIAFAIRK 402          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT)

HSP 1 Score: 215 bits (547), Expect = 1.440e-60
Identity = 118/279 (42.29%), Postives = 183/279 (65.59%), Query Frame = 1
Query:    1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPID--RKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            +KW+F+ K   DG+V  +KARLVAQGFSQ  G+D+ +T +PVAR  ++RTV +LAA+H  +L  MDV  A+LN  ++EE+++K P  F    ++   V RLR+S+YGLK+S R WN+ LD  L  MG   +T D C+Y  +++GGE ++ +AVYVDD+++AG+ + K++E+K  ++++F+MKD+G L   LG++V     +  I I Q +  + VL+R+G +  +   TP++   K+K  A + +  +    +  VG L+Y ST TRPDIAYAV   AR
Sbjct:  558 SKWVFRIKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIEKGKEH-LVCRLRRSIYGLKKSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKEADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVAR 833          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 211 bits (538), Expect = 1.900e-60
Identity = 117/279 (41.94%), Postives = 181/279 (64.87%), Query Frame = 1
Query:    1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPID--RKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            +KW+F+ K   DG+V  +KARLVAQGFSQ  G+D+ +T +PVAR  ++RTV +LAA+H  +L  MDV  A+LN  ++EE+++K P  F    ++   V RLR+S+ GLKQS R WN+ LD  L  MG   +T D C+Y  +++GGE ++ +AVYVDD+++AG+ + K++E+K  ++++F+MKD+G     LG++V     +  I I Q +  + VL+R+G +  +   TP++   K+K  A + +  +    +  VG L+Y ST TRPDIAYAV   AR
Sbjct:  176 SKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEIFI-IAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVAR 451          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI)

HSP 1 Score: 212 bits (539), Expect = 3.240e-60
Identity = 113/276 (40.94%), Postives = 172/276 (62.32%), Query Frame = 1
Query:    4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRREKV-DELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQAAR 828
            KW+FK+KL+ DG++ +YKARLVA+G++Q EGED+F T +PVAR++T+R + SLAA H F +  MDV  A+LN  +EEE+++  P  F    ++   V +L KSLYGLKQ+ + W+   D  L   G   +  D C+Y+ R  GG+  +L  +YVDD++I G   KV  E+K  +S  F MKDLG    I+ I++  +  N  +T+ Q   + +VL R+G+ EC   PTP D  V++      + +      ++GSLMY ++ TRPDI++AV + +R
Sbjct:  233 KWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYY-RFGGGDGVIL-CLYVDDILIFGNNLKVIKEVKEFLSNNFEMKDLGEADVIVNIKLSREEGNGWVTLMQSHYVEKVLNRFGYSECTPAPTPYDPSVRLRKNHRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSR 505          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A2U1PVD2_ARTAN (Zinc finger, CCHC-type n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PVD2_ARTAN)

HSP 1 Score: 216 bits (549), Expect = 4.370e-60
Identity = 117/273 (42.86%), Postives = 174/273 (63.74%), Query Frame = 1
Query:    4 KWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENRGMVGSLMYASTGTRPDIAYAVHQ 819
            KWIFK+ +K DG++ ++KARLV QGF Q  G D+F T A VAR+ST+R + +L+A HD  +  MDV  A+LN  +EEE+++  P  F  P  +   V +L KSLYGLKQ+ + W+   D+ ++  G   + +D C+Y SR D   + +++ +YVDD++I G  +++VDE K  +S +F MKD+G    ILGI ++  R +  I I+Q   I ++L+R+ + EC  V TP+D  VK++  +G   +  E   +VGSLMYA T TRPDIAY V Q
Sbjct:  722 KWIFKKNMKVDGTIDKFKARLVIQGFKQKPGIDYFDTYATVARISTIRLLIALSAIHDLIVHQMDVKTAFLNGDLEEEVYMNQPEGFVMPGNEHK-VCKLVKSLYGLKQTPKQWHQKFDEVILSSGFSLNQSDKCIY-SRFDSSCSGVIICLYVDDMLIFGTDQQQVDETKDLLSSKFSMKDMGEADVILGIRIK--RADKGIAITQSHYIEKMLKRFNYSECSPVSTPMDSSVKLMLNKGMGISQLEYSQVVGSLMYAMTSTRPDIAYDVGQ 990          
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 214 bits (545), Expect = 1.640e-59
Identity = 125/280 (44.64%), Postives = 171/280 (61.07%), Query Frame = 1
Query:    1 TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFF--KTSAPVARMSTLRTVFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRRLRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLLVAVYVDDLVIAGRREKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPNDAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSG-------NSTENRGMVGSLMYASTGTRPDIAYAV 813
            +K +F+ K   +G+V+ +KARLVAQGFSQV G D+   +T APV+R+ ++RT+ SLAA HD+EL+ MDV +AYLN  +EE ++++LPP F+PP +    V RL+K+LYGLKQ+GR W  TL   +  MG      D  +++ R+  GE+ ++VA  VDDL I G  + VD    +I QRF M DLG L  ILGIEVR DR    I ISQ S I  ++ R+  DE   +  P+     +   +  S             R  VGSLMYA+ GTRPDI +AV
Sbjct: 1074 SKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSH-LVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAV 1350          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61293.13833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445HPU2_GLYSO1.620e-6244.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9KES8_PARCT2.990e-6242.65Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2U1QL30_ARTAN6.090e-6242.75Zinc finger, CCHC-type n=1 Tax=Artemisia annua Tax... [more]
A0A7D9HZ03_PARCT2.350e-6140.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2LWU7_TANCI1.050e-6041.39Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A6S7IKL3_PARCT1.440e-6042.29Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT1.900e-6041.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
C6JRI2_SORBI3.240e-6040.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2U1PVD2_ARTAN4.370e-6042.86Zinc finger, CCHC-type n=1 Tax=Artemisia annua Tax... [more]
A0A2G8RWY5_9APHY1.640e-5944.64Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61293contigH-paniculata_contig61293:5..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score214.5
Seed ortholog evalue6.1e-53
Seed eggNOG ortholog4558.Sb0010s005460.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size834
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.5945597-CDS-H-paniculata_contig61293:4..1191622930689.5945597-CDS-H-paniculata_contig61293:4..119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61293 5..119 -
1691481407.3710866-CDS-H-paniculata_contig61293:4..1191691481407.3710866-CDS-H-paniculata_contig61293:4..119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61293 5..119 -
1622930689.6139326-CDS-H-paniculata_contig61293:200..9191622930689.6139326-CDS-H-paniculata_contig61293:200..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61293 201..919 -
1691481407.3814979-CDS-H-paniculata_contig61293:200..9191691481407.3814979-CDS-H-paniculata_contig61293:200..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61293 201..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61293.13833.1prot_H-paniculata_contig61293.13833.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61293 5..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61293.13833.1

>prot_H-paniculata_contig61293.13833.1 ID=prot_H-paniculata_contig61293.13833.1|Name=mRNA_H-paniculata_contig61293.13833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
TKWIFKRKLKEDGSVARYKARLVAQGFSQVEGEDFFKTSAPVARMSTLRT
VFSLAAEHDFELKGMDVGAAYLNAPVEEELFVKLPPQFSPPSRDIPFVRR
LRKSLYGLKQSGRNWNNTLDDFLVGMGLDPSTTDSCLYFSRDDGGETYLL
VAVYVDDLVIAGRREKVDELKHNISQRFRMKDLGSLSRILGIEVRPDRPN
DAITISQGSKIREVLQRYGFDECRGVPTPIDRKVKILAPEGRSGNSTENR
GMVGSLMYASTGTRPDIAYAVHQAARRM
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mRNA from alignment at H-paniculata_contig61293:5..919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61293.13833.1 ID=mRNA_H-paniculata_contig61293.13833.1|Name=mRNA_H-paniculata_contig61293.13833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=915bp|location=Sequence derived from alignment at H-paniculata_contig61293:5..919- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTAGCGCG CTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTGAAG ATTTCTTTAAAACGAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACT GTTTTTAGTCTGGCCGCCGAACACGATTTCGAACTAAAAGGCATGGACGT AGGTGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTCGTTAAGC TACCCCCCCAGTTTTCCCCTCCCTCCCGAGACATACCGTTTGTGCGTCGC CTGCGTAAAAGCCTGTATGGCCTCAAGCAGAGCGGCCGAAACTGGAATAA CACTCTTGACGATTTTCTTGTTGGGATGGGACTCGACCCTTCCACTACCG ACTCATGCTTGTATTTTTCTCGCGACGATGGGGGAGAGACATACCTTCTG GTGGCCGTGTATGTTGACGACTTGGTGATTGCTGGTCGTCGTGAGAAAGT AGACGAGCTCAAGCATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGG GCTCTCTCTCGCGCATATTGGGAATAGAAGTACGACCTGACCGCCCTAAT GATGCCATAACCATCTCGCAGGGTAGCAAAATCCGCGAGGTACTTCAAAG ATACGGTTTTGACGAGTGTCGAGGCGTGCCCACCCCTATCGATAGAAAAG TGAAGATTTTGGCACCCGAGTCGGCCGACAAGCCCCCCGAACCGAAACCA CTTGAGGCTGTACTGTCGGACATAGGCGCAGGAATACAAGAAAGCATCAG AGGGAGAAGTGGCAATTCAACTGAAAATAGAGGCATGGTAGGATCACTCA TGTACGCCTCGACAGGAACTAGGCCTGATATAGCATACGCGGTACACCAA GCAGCACGTCGTATG
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Coding sequence (CDS) from alignment at H-paniculata_contig61293:5..919-

>mRNA_H-paniculata_contig61293.13833.1 ID=mRNA_H-paniculata_contig61293.13833.1|Name=mRNA_H-paniculata_contig61293.13833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig61293:5..919- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTAGCGCG
CTACAAAGCGCGACTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTGAAG
ATTTCTTTAAAACGAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACT
GTTTTTAGTCTGGCCGCCGAACACGATTTCGAACTAAAAGGCATGGACGT
AGGTGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTCGTTAAGC
TACCCCCCCAGTTTTCCCCTCCCTCCCGAGACATACCGTTTGTGCGTCGC
CTGCGTAAAAGCCTGTATGGCCTCAAGCAGAGCGGCCGAAACTGGAATAA
CACTCTTGACGATTTTCTTGTTGGGATGGGACTCGACCCTTCCACTACCG
ACTCATGCTTGTATTTTTCTCGCGACGATGGGGGAGAGACATACCTTCTG
GTGGCCGTGTATGTTGACGACTTGGTGATTGCTGGTCGTCGTGAGAAAGT
AGACGAGCTCAAGCATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGG
GCTCTCTCTCGCGCATATTGGGAATAGAAGTACGACCTGACCGCCCTAAT
GATGCCATAACCATCTCGCAGGGTAGCAAAATCCGCGAGGTACTTCAAAG
ATACGGTTTTGACGAGTGTCGAGGCGTGCCCACCCCTATCGATAGAAAAG
TGAAGATTTTGGCACCCGAACAAAATGGATTTTCAAGCGGAAACTGAAGG
AGGACGGCAGCGTAGCGCGCTACAAAGCGCGACTGGTGGCTCAAGGTTTT
TCACAGGTGGAGGGTGAAGATTTCTTTAAAACGAGTGCCCCCGTAGCTCG
CATGTCGACGTTACGTACTGTTTTTAGTCTGGCCGCCGAACACGATTTCG
AACTAAAAGGCATGGACGTAGGTGCGGCGTATTTGAACGCCCCGGTAGAA
GAAGAGCTGTTCGTTAAGCTACCCCCCCAGTTTTCCCCTCCCTCCCGAGA
CATACCGTTTGTGCGTCGCCTGCGTAAAAGCCTGTATGGCCTCAAGCAGA
GCGGCCGAAACTGGAATAACACTCTTGACGATTTTCTTGTTGGGATGGGA
CTCGACCCTTCCACTACCGACTCATGCTTGTATTTTTCTCGCGACGATGG
GGGAGAGACATACCTTCTGGTGGCCGTGTATGTTGACGACTTGGTGATTG
CTGGTCGTCGTGAGAAAGTAGACGAGCTCAAGCATAACATAAGTCAGCGT
TTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCATATTGGGAATAGAAGT
ACGACCTGACCGCCCTAATGATGCCATAACCATCTCGCAGGGTAGCAAAA
TCCGCGAGGTACTTCAAAGATACGGTTTTGACGAGTGTCGAGGCGTGCCC
ACCCCTATCGATAGAAAAGTGAAGATTTTGGCACCCGAAGGGAGAAGTGG
CAATTCAACTGAAAATAGAGGCATGGTAGGATCACTCATGTACGCCTCGA
CAGGAACTAGGCCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGT
ATGAGGGAGAAGTGGCAATTCAACTGAAAATAGAGGCATGGTAGGATCAC
TCATGTACGCCTCGACAGGAACTAGGCCTGATATAGCATACGCGGTACAC
CAAGCAGCACGTCGTATG
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