prot_H-paniculata_contig6112.13819.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6112.13819.1
Unique Nameprot_H-paniculata_contig6112.13819.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length64
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6112.13819.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.790e-20
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 0 
Query:    1 MSPWLKVTVLLHDLEPSPRFGLRHPYSQALIAVYKSMGNSMFDFSQKVWHFPIAMLDEVMQRVR 64
            MS W+KVTV+LH LEP PRFGLRHPYS ALIAVYK++ +S+FD   ++WHFP+ +  EV+++VR
Sbjct:    1 MSSWIKVTVVLHSLEP-PRFGLRHPYSNALIAVYKAISDSVFDHPNRLWHFPLGLRTEVVKKVR 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6112.13819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK86_ECTSI5.790e-2062.50Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010003HARP domainPFAMPF07443HARPcoord: 22..64
e-value: 1.2E-6
score: 28.1
IPR010003HARP domainPROSITEPS51467HARPcoord: 1..64
score: 10.003

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6112contigH-paniculata_contig6112:3291..11256 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6112.13819.1mRNA_H-paniculata_contig6112.13819.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6112 3263..11256 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6112.13819.1 ID=prot_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MSPWLKVTVLLHDLEPSPRFGLRHPYSQALIAVYKSMGNSMFDFSQKVWH
FPIAMLDEVMQRVR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010003HARP_dom