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Homology
BLAST of mRNA_H-paniculata_contig6112.13819.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 4.030e-19 Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 2
Query: 29 MSPWLKVTVLLHDLEPSPRFGLRHPYSQALIAVYKSMGNSMFDFSQKVWHFPIAMLDEVMQRVR 220
MS W+KVTV+LH LEP PRFGLRHPYS ALIAVYK++ +S+FD ++WHFP+ + EV+++VR
Sbjct: 1 MSSWIKVTVVLHSLEP-PRFGLRHPYSNALIAVYKAISDSVFDHPNRLWHFPLGLRTEVVKKVR 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 91.7 |
| Seed ortholog evalue | 1.4e-16 |
| Seed eggNOG ortholog | 2880.D8LK86 |
| KEGG ko | ko:K14440 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | annealing helicase activity |
| EggNOG OGs | COG0553@1,KOG1000@2759 |
| EC | 3.6.4.12 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03036 |
| Exons | 2 |
| Model size | 220 |
| Cds size | 192 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6112.13819.1 >prot_H-paniculata_contig6112.13819.1 ID=prot_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MSPWLKVTVLLHDLEPSPRFGLRHPYSQALIAVYKSMGNSMFDFSQKVWH FPIAMLDEVMQRVR back to topmRNA from alignment at H-paniculata_contig6112:3263..11256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6112.13819.1 ID=mRNA_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7994bp|location=Sequence derived from alignment at H-paniculata_contig6112:3263..11256+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGGCAGGTGGAGAAGGTCCCACCATCGATGTCTCCTTGGCTCAAAGTAA
CCGTGTTATTGCATGATCTTGAGCCCTCGCCGAGGTTCGGCTTGCGACAT
CCCTACTCGCAGGCGCTTATCGCAGTCTACAAGGTGAGGCTAGACCGGGT
GCGGAGTATGTTGGCGCGGGGTATGTTAGCCTCGACTTTCGAAAGTGTCT
GTCGATGCTCCTGCAGTTGAATCTTCTGCGCACAGCAACATGGTGTTGAT
TGTGTATTTGTGTTGGCGTGCACACTGCAGTACGATGAGTGTCACTATAG
TATTGACGTGTAGAACGAAATTCTTACGCATAGGTGTAGTTTAGGTTCGC
GCTCGGCAATAGGTGAGACTGCATAGCTGAACGGGGTGCGCCTAATAACA
CATGTGTGAACCTAGTATGGCGCACACAACGCCTCGATACGTCGATACGC
GACATGGACGGTGCCGTTTGTTATCATGTGTATGGTACAATCCACACATA
CAGTCGATATTATAGTGAGTGTCGTACTCGGTGCTTTTCCTCATTCCGCA
CACACGTGACAAGACCAAAGAGCAGTACAACATGTTCAACAGATATTCTT
CCGTCACTCGCCTCCTGACACCCACTATCCCAACTATTCCAACAATGTCG
CTCTCCCGGACTTCTCCCCCTCACACTTCGTTCCCAAACGGCGAAGTTGT
GGCGATGTCAAACATGTGGCTCGGGGCTAGAACACCAAACGGTCGCTACG
AAGGACTGTGAAGTGCATGTGATATATTGTGGACATAGACCCACATAATG
CGCACACACTAGGTAATGCGTCGTGACGCCTCATCAGATCTCCTATATTC
GTCCTTGACTGTAGATATTATGGGGGTGAAACCGTCGAGGCGGGTTGGGT
TATAGATCTTTGTCGCTTCAAAGGTGCTGCTCGTCATATTCCACAAAAAC
TCTGCCTCAGACTTCGCAGTTTTCCGATAGCACTATTGTTGTTTTGTTTT
CATGAGCTCATGACAGCTTCGCCGTTTTTCTACGTGGTTTTTGCCCTAGA
TCGGGATCTTGACCCATATATCAGGAGTTCGACTACATCGCGCAGCGAAT
ATGTACAACTGTGAAGATGGTTTAATTATATCCCCTAGATGGAGAGCGAC
CTAGATTAGGGGAAGGATGTACTACAGTGGTGTGTGCCTAAGTTAGGCAG
GAGCTGTGATCGCTGTGGTGTTCAGACAGACGATGCAGTATAGACGGTAC
ATATATCTCGAAAGAGTTGGAATTGGCTTGCCTACGATGACTACAGCGCT
CGATATGATGATTAGCTGCCATTTTTTTTCTGAACCCTATCCGGATATAA
TGGTTAACGATTGATGAAAGTTCGAATTACATTTTAAACGCTTGCTCCCG
TCATGTTAACCTGTGCTGCAGCCAATACAAACCGAAATAAAGGTACAGCC
AGATCAACAGTGTGAAGGCACGTCTGAACCCCAATTTGTTTTGCGAAAAA
GTTGCGGAGTATTGCCGTTCTGGATGGAGAGTTGTGGTTCACGACAGGGC
GAGGATTGATCGTGTTCCGTAGTAGTTGGTACCAACACACTCCAAGCAGA
GGGAGAATTGGTGAACGTTTACCTTGTTGGCGGAGGCCTTGCAAGTTCGT
TTTAATCATGGAAGAAGTATATCTCTAGAAGACATATTAATTATAGAGTA
GGGGCATTTCGGTTACTTTTTGCTGCTGCCCTGACCGTTTTTTCGTTTTT
TCAAAAGGTGTGACATACGGTATGACCGTTTTGGTACAAAAACAGACTTG
AACAGTGATTATACAACAGATCGCCTTACGAGCCTGACTGAGCTTATTGC
ATACCACATCCAGCCCCAGATACGTGTACCGAATGGCCATGCGTAGCTTG
CATGCAGCAAGATGCTGACAGCAGGCGTTGGGATTGACATCGTAACTCAT
CGTACAGATCAATTTTTTTTTCGGATATTTGCAAGGGTGTGTTGTGTAGG
GTATTTGTAGGGTATTGGAAATGTTACAGAACTCAGAACTTCTCTGTAGG
GTATTGGAAATGTTACAGACTTCACAGAAGTTCTCTGTAGGGTACTTACA
GACGGTAACTACCCCCCGGTATTTTTGTGGGTACCCTACGGAACACACCC
TTGGATATTTGTACGGTCCTTGATGCCGCAAAAAAATGCTGCTGGACGAA
AGACCAAAAATATGGACCAATATATATACATATATATATATTGGTTTGCA
TACCCTCGTGGGAGTCTAGAAAGTTGTTCCAGGCCTCCAAACGAGGCCCC
CATCTATCATGAACATCTCGCGGTGCTCTCTCGAGTTGGATCGCTGTCCT
CTAGTGTCCTACCAGTAGAGAGACACTCGTTGGGTACAAAACGTTCAGTT
GCCACATTTTTAGTTTCGAACGAAGAACTTCATGTGGCACTTGCGTGGCA
CCAAAAAGGCAGCGGTGAAGCGTCTGTACAGTCAGCATCGTAACATATAA
CTATTTAAATACACAACCAACCTGCACCAACACGACCATATATCCTCGTC
ATCGATATGCTGCTGTTGCGTGCTGGTACAGGAGCTTTGAAGCTCTAGCA
CACATTTACCGCGAGCATCGAAGCACCACTTGTGTGCCATAGGTTTCTCT
GCAGTTGGGTGGGTAACCTGTAGTGTGGTCGAGACTATGTAACTGGCAGC
GATGACGAAATGTCGCATGTGCTTTGGTGTGCTGTGTTTTATTTGCAGGT
CATATCTGCCACCATATACGCGAGATATCACCCCTTGGGATTCTCCCTTG
CTAAGGAGATGCCTTCAATATGACATTTTTCTCGCTAATATCCCTTGCCG
TATTCGACCGGCGCATGGAAGCCATGCCCTGCACTCGCTCCGGATCATGA
GAAACCATTGCCCCCGAGTAAATCTTCCCGCACCAGCGCATCTCCCGCCG
GGACAACTTCACCTTGTGGACCACAGCATATATACTGCGTCTCTGTAGCC
GCTCCAGCACCGCCCGCAGTCTCTACGTCAGTTCCTGCCGCGTACCGGCC
CATTTTCCTAAATCGTCAACCTACACTTCGCAGATTTTGCCGAGCAGGCC
TTCCAGAATGTCTCCTATCGTCCCCTGGAGATAACTAGTCGCATTTAGCA
CTGGCTGGCGGAGTCTGGTAGGCGTTTATAGCCGCTTGGTCGTGACCATC
GTGATTATCTCTTGCGCTTGGGGGTCGAGCGGTATTTGCCAGTATTCCTG
GAGCGGATCCAGCGTGCAGAACGCGCTAGCTCCTGCCATGTCTAGCCCCA
TCTCCTCCGAGTTTGGAAATCGCCGAGGGCGCGACCAGGATGTTCACTGC
GCGTTAATCGGCCACCATTGGGTATATGTCCTTTTTGGGCACCTCCATCG
CCACCCTGCCAAACCTTGCCTGGGACTCGCGAATAGTATGCCTATCCGTG
CCAGCTTCGCGGATTGATCATCCAGCCATTCCTCCTTGGTGTGCGACATC
GGGCGCGGCCCCACCCAGGCAGTACGCGCGTCCGCCGGCGGGTCTCCGTT
CAGCGCCCGCTGAATCGCCTGGAAGTGGGGGTTCATCATTAGTTCTCTTA
GCTCCGCGACTCCCCTCGATGGCAAACCCTCGGTCCTCGCCTCTTCTATC
GCCGATTCCAAAGCCGCGGCACTCTCTCGGATCTCCGTGTTTGCTGTCAT
GAATATGTCAGGTCCTGCCCATCGCGATCATTACCTCGTCTTCAGCATCC
CCGCCATTGTCCGCACCACCTGCGGCTCGTAGTAGAGTTTCCGCATTTAC
TTCGACACTCCGATCGCGCACTGGGCCTTGTTTCGTCACGTCTCTTTACT
CCACGATTTCTTCGCATCACGTCGATATCCAGATTCTTCCGCAGCGTCCG
TCCGCCGAGAATGACCACCCCCAATTTTCCCGGCACTATCAAGAGCGGCA
GCACGATCCGCAGGTCGCCCCTGCTAGACGCGAGGACGATATATAGTGGA
ATCATCTCTTCCATCAGCTCCAACTTGCGCCCGTTAGCCACCTGTGCCTT
CAACACGCCGGTATACAGCCTCGAGAGGAACTCGCCGGTCACTGCTGCTG
TAGCCGATGAAGAACGTGTTTAGATAAAACCGTCACACCAGCCCTCGAGT
CCAGCAGTATGTCAACGCTCAATGGCTGGACATCCGCTCCCGGTAACTCC
AGACGCCCTCGGAGATGGTGGTCCACGTGTTCTACGTGTACCTTATCGCC
TCCGCCCACAGTGCTCCCCACCTCAGCCCCTTCACTCACGGCTACAGGTA
GCTATGCGTAGCGAGTGGACATACTGAAGCTGTTGGAGCCGCTAGGCTCC
GGCGGCGTCTTCACAGGCGCCGACTGCAGTTGTGGGGGCGGCATGCTCGG
CCCCGCCTGCTGCGAGACCATTGTTTCCATGACTGACTGGGTTCTCCCCA
GTCCGCCGTCGATGAACAATCGTTTAGGCACCTGGACCGTGGCGAATTCC
TCCTGTTCGCCAGCCGTGAAAAATAGATTTCGTGGCGACCGCTCCTGCTG
CCCACCGCTCAGCACCCCACCCTGGCTCCTTGTGCGCTGTGCCACCGACA
TCCCCTTGTCGAGGGCAGGATCAGTCGATTTATGACTACCCGGTCTCTGG
CGCGATGAGGTGGAGGATTGCCTGGACATGTCTGCCATCTGTCCCTGGTT
GGCCGTCTGGCCGTGGGCGCCACGCCCGCACTTCGTTTGTTTATGCTCTA
CCCCTCCACATATGAAATACTTGCCCGGGAAGCCCTTTTCTTCCTTGGCC
ATCTTCTGCGTACCATGGGCTGGCTCTCCAGCCTTCTGCGTAATTGGGGC
AGCCTTTCCTCTTCCAACTATCGCTTTCCGTCCTGCCGCACGTCGTTTCA
CGATGACTTTCTCTTTTCCCAGCTTCTTTGGAATCTCAACAAATGGCGGG
GGGGGTCACTTGAATTAGCGCTTATTCTCACCATCTGTATGGTGTCCTCT
TCGTACTCTGGCGGCCAAAGACCCGGCAGGAGCGCGCTCACCACTGTCTC
CCTGGGGTCAACGGCCCAGTCTCCATTTGGCATTACCACGTCCATTAGAT
TGTTTGTATCTACGTATTGCCAAAGGTTTCCCTCCACGTCGGACACCCCG
CGTTCCATCGGTAATCTGTCGTTCAGTCTCAACAGGCAGGCCATGTCCTT
GACAAACACTCGTTCGTCAAGTGCTTCGTCATTGCCTACTAACTTTGCTA
GCCCTGCGCGCAACAGAGCCTCAGTTAGCCTTGGCTTCCCCTTACAGAAT
TTCGCATGGGTCATCTTTTTTATGTATGGGGCTACCACCTCCCTTAGAGG
AGAGGCCACGCGCCCACCCCCATCACAATTAGAGATGGTCAGCTCCTCCT
CATAGTTATAGTAGCCCCTCAAAACATTACGCACCGTTGAACCTGTTAGT
GGTTGACTGAAGCGTGGCGTCATTCTCCCACTAGCCGTCACACTCACCCC
TCGTTCTCCCGGCGCGGCCCCGCCCGTCTTAGCGCCGCCACCATCCCAGT
GTTTTTCTCGAACCTCGACTATTCTCAACACCGCTGAACGCACGACGTGA
GGAAATCGATCGAATTATATTAACCGTGGATTCGCAGTCCCGTGGTCGTT
GCCTCGGGGACTTCCCTCCGAACTATAATACCCAGTATGCTTTACTAATT
CACCGAAACTCCACAAGGAAGTGCCAAGTACGCTCCAGGAGCTCAACCAT
TAGAAAACAATGGAATACACTTTGTAGCAAATTCACCACGTCGTACAACC
AGTGACCTTCTCTGACCTATGCCGCTGTGCTGAAGTTACACTATGTCATG
ATCCACGACCGGGCATGGATTCATCGTGTTCCCTAGCAGTTGCTACCCAG
CCTCTCCACACGGGGGAGGAATTGGTTTGCATTTACCCAGTTGGCGGAAA
ACTAGGTACACCGTTGACTGCTGGACGACGAAAATATGGGCAAAACACCT
GGCGAACATTTTTTGTTTACGTTCAAACCTCCTTGGAATTGAATTCTGTA
TGCGATACGACAAGTCATCCGACTCTCTGGTCGTGTTAGCTTCCCACTGG
CACCTTTGTTGTTGACTACCGATGACTACAAACGTCGCAACGCTATCAAA
GGTGAACATATGCTCTTCGATGATCTGTCTCTTTTTCCGCCTCAAGGAGT
CTTACCGGGGTCTAAAAGCCGACACAGTTTTCAAGTGTATTTTAAACTAA
AGAATGTTTTTATCTTCATAGTATATAGCGATTGCAGCGGGGGGGTGTTT
GACTTTCTGTTGCTAGTGACTGTAGTGTGATACTGTCTGTAACTACGGAA
CTGGCGATTGTCGCGCAGAATACCAGTATCAAACGAACGCACAAGTTCGG
TAGTGACTCGTACCCAAGTATCAACACAAATAGACGGCACGAATCTAAAT
AGCACGAGGCCCAGGACGGTTGGATTTGCCAACTCCAGGCACATGTGACC
TATTATTGATTGTTTGGCGTTCAGTTGCGTTTCAGCCCGTCGGGTATTTA
ACTAGTCAAGCACCCACGACATGATGAAAACATGTCACCGCCCGGATGAA
TACGAATACTTGAGGCATTCGCGAGGAAAGCCAAAACGTATTCTCCTGAA
GGGTCAGTGGGAGCACTTTTATTTTTTGTGCCCTGGACCATCTGCGATTG
TTCCAAATGAAGTAAAACGAATAAACAGGGGCGACCATTTTTATCCATGT
GCCCACACATTCTGAACCTTGCGGCAAATATTTTTAATTGTGTTCGCGAA
TGCTTCCAAGTATTCGTATTCGTCCAGAGAGTGAAATGTTTCTCAAATTC
GAGTTCCCTTGAATTGTAGTATCGCATGGAGTCCGTCCATCGACAGGTCT
CGACGAGATATATTGTAACGAAAGAAATTTTGGTTTTGCCCGGCACTAAG
CTTTTCAGAAACCCATGTTTGAAGAACGTAATATTATGTGTGTTAAAACT
CGGAATGTTGCTCAGCATAGAGTCGCGAGGGGGCAGGAAGGGGTGGGGGG
GAAATTCTCTGCCGATAGTGACGGCAGTGTTCGGCATGGCAGCTATAATG
GTATGGTAACACGAGTCCCAAATAGTATTTGCCATGCGGGCAATGATGCC
GTCAAATGAAAGAAATTAACGACTGCCGATACAGGGCACTGTCTATTTGC
ATAGCTACCCCCGAGAGGTGGTCCTACTTCACTCACCTTAATGTGCAAAT
AGCTTGTGTGTTTCGTGTGAAAGTTGGGAGGAATTTTACGACGATTACAC
CAAACTTGCAGTCAGTCTCCCAGCTTTCAAACTAGAAATAGGAACACACG
TTGTCAGTACGATTTGCTGGCCCGAAAGATCAGGCACCTGCGAACAGGAG
ATGACGAGTTGACGCAGTTTGGGACGCATTGCTCCTCCAGCTCAGATTGA
CAAATAACTTGACTCATGTTGCAGATTACCTCGAGCTCCAGTAATCAAAT
GGCTGTGCATGAAACCGTTGCATAGGAATTTGAATTTCCCTAGCGTCCCG
TTCTCGGAAGTACGTCGTGATCTGTATCATGGGGCCAGGATTCGACCATT
GTCTCGAGTATTTTACCGGAGCGAAAATACGCATGCAACAGTAATGGTAT
ACGGTTAGACTACGGTGCTGAGCATCTGCTAGTGTTGGCTCGGCTCTCGT
TGGTTTCCGTTTGTGATATTGGTTTTTAGAAAGTGGAAGTCATCCACTTA
GCGTTTCCTCTCTATATGCGTATCCCTCTATCCCTCCTTCTCTGTCTGAG
ATTGGCACATACCCGTGCCGACGAAATACTGTGAGCACGCACATGAGGCA
CACGTCACAAGCCTTTAATGTCTTGCCGTTTCGTTTCTCCGTTCCCACGC
TCGTCAGAGTATGGGAAATTCCATGTTCGACTTCTCACAGAAAGTGTGGC
ACTTTCCCATTGCGATGCTGGACGAGGTCATGCAGCGCGTGAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig6112:3263..11256+ >mRNA_H-paniculata_contig6112.13819.1 ID=mRNA_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig6112:3263..11256+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCTCCTTGGCTCAAAGTAACCGTGTTATTGCATGATCTTGAGCCCTC GCCGAGGTTCGGCTTGCGACATCCCTACTCGCAGGCGCTTATCGCAGTCT ACAAGATGTCTCCTTGGCTCAAAGTAACCGTGTTATTGCATGATCTTGAG CCCTCGCCGAGGTTCGGCTTGCGACATCCCTACTCGCAGGCGCTTATCGC AGTCTACAAGAGTATGGGAAATTCCATGTTCGACTTCTCACAGAAAGTGT GGCACTTTCCCATTGCGATGCTGGACGAGGTCATGCAGCGCGTGAGGAGT ATGGGAAATTCCATGTTCGACTTCTCACAGAAAGTGTGGCACTTTCCCAT TGCGATGCTGGACGAGGTCATGCAGCGCGTGAGG back to top
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