prot_H-paniculata_contig6103.13807.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6103.13807.1
Unique Nameprot_H-paniculata_contig6103.13807.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length192
Homology
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BLAST of mRNA_H-paniculata_contig6103.13807.1 vs. uniprot
Match: D8LTS9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 9.750e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0 
Query:   58 GTNVRKTVEPLSEILRTEPKDAVLLLLSPQAPCGSFFVYGGWVGGPGRESDVRLVDIAQ 116
            G  VR+ ++  +  +RTEP  +VLLLL+P   CGS  V+GGWVGGPG E DVRLV+I Q
Sbjct:  453 GARVRQGLKQGTATVRTEPSKSVLLLLAPPCSCGSLLVHGGWVGGPGNEGDVRLVEIGQ 511
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BLAST of mRNA_H-paniculata_contig6103.13807.1 vs. uniprot
Match: A0A6H5KFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.980e-10
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 
Query:   58 GTNVRKTVEPLSEILRTEPKDAVLLLLSPQAPCGSFFVYGGWVGGPGRESDVRLVDIAQ 116
            G  VR+ ++  +  +RTEP  +VLLLL+P   CGS  V GGWVGGPG E +VRLV+I Q
Sbjct:  382 GARVRQGLKQGTATVRTEPAKSVLLLLAPPCSCGSLLVNGGWVGGPGSEGEVRLVEIGQ 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6103.13807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTS9_ECTSI9.750e-1255.93RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFS7_9PHAE1.980e-1054.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..191
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.866

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6103contigH-paniculata_contig6103:6391..8859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6103.13807.1mRNA_H-paniculata_contig6103.13807.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6103 6304..8887 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6103.13807.1 ID=prot_H-paniculata_contig6103.13807.1|Name=mRNA_H-paniculata_contig6103.13807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MLIFVVFSYAALGYCLATLLTCCSPCMHVTHSSRCARRVHVFRCTWFVYH
TMQTASGGTNVRKTVEPLSEILRTEPKDAVLLLLSPQAPCGSFFVYGGWV
GGPGRESDVRLVDIAQPQPPPPSDDLVNFPGMPNIPPAVSGATAGDVSAP
GEDIQGSPPHGAEAQGNGASGEGEHGEGLRRRVGAGVGGNS*
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