mRNA_H-paniculata_contig6103.13807.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6103.13807.1
Unique NamemRNA_H-paniculata_contig6103.13807.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6103.13807.1 vs. uniprot
Match: D8LTS9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.390e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  200 GTNVRKTVEPLSEILRTEPKDAVLLLLSPQAPCGSFFVYGGWVGGPGRESDVRLVDIAQ 376
            G  VR+ ++  +  +RTEP  +VLLLL+P   CGS  V+GGWVGGPG E DVRLV+I Q
Sbjct:  453 GARVRQGLKQGTATVRTEPSKSVLLLLAPPCSCGSLLVHGGWVGGPGNEGDVRLVEIGQ 511
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BLAST of mRNA_H-paniculata_contig6103.13807.1 vs. uniprot
Match: A0A6H5KFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.620e-10
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  200 GTNVRKTVEPLSEILRTEPKDAVLLLLSPQAPCGSFFVYGGWVGGPGRESDVRLVDIAQ 376
            G  VR+ ++  +  +RTEP  +VLLLL+P   CGS  V GGWVGGPG E +VRLV+I Q
Sbjct:  382 GARVRQGLKQGTATVRTEPAKSVLLLLAPPCSCGSLLVNGGWVGGPGSEGEVRLVEIGQ 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6103.13807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTS9_ECTSI2.390e-1155.93RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFS7_9PHAE4.620e-1054.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6103contigH-paniculata_contig6103:6304..8887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue8.9e-11
Seed eggNOG ortholog2880.D8LTS9
Preferred nameSYVN1
KEGG koko:K10601
KEGG Pathwayko04120,ko04141,map04120,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal peptide
GOsGO:0000151,GO:0000153,GO:0000209,GO:0000835,GO:0000836,GO:0000839,GO:0001701,GO:0002020,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0005886,GO:0006417,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008593,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009790,GO:0009792,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010608,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0030176,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031326,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032527,GO:0032991,GO:0033036,GO:0033554,GO:0034248,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035264,GO:0035966,GO:0035967,GO:0036211,GO:0036335,GO:0036490,GO:0036498,GO:0036503,GO:0036507,GO:0036508,GO:0036513,GO:0040007,GO:0042175,GO:0042221,GO:0042592,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043555,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060548,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070887,GO:0070936,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1902235,GO:1902236,GO:1902494,GO:1902531,GO:1902532,GO:1903513,GO:1903573,GO:1904380,GO:1905897,GO:1990234,GO:1990381,GO:2000112,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.protein polyubiquitination
EggNOG OGsCOG5243@1,KOG0802@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons2
Model size691
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6103.13807.1prot_H-paniculata_contig6103.13807.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6103 6391..8859 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930685.6075516-UTR-H-paniculata_contig6103:6303..63901622930685.6075516-UTR-H-paniculata_contig6103:6303..6390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6103 6304..6390 -
1691481405.820991-UTR-H-paniculata_contig6103:6303..63901691481405.820991-UTR-H-paniculata_contig6103:6303..6390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6103 6304..6390 -
1622930685.6505702-UTR-H-paniculata_contig6103:8859..88871622930685.6505702-UTR-H-paniculata_contig6103:8859..8887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6103 8860..8887 -
1691481405.851197-UTR-H-paniculata_contig6103:8859..88871691481405.851197-UTR-H-paniculata_contig6103:8859..8887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6103 8860..8887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930685.6253164-CDS-H-paniculata_contig6103:6390..66331622930685.6253164-CDS-H-paniculata_contig6103:6390..6633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6103 6391..6633 -
1691481405.8330035-CDS-H-paniculata_contig6103:6390..66331691481405.8330035-CDS-H-paniculata_contig6103:6390..6633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6103 6391..6633 -
1622930685.6389704-CDS-H-paniculata_contig6103:8526..88591622930685.6389704-CDS-H-paniculata_contig6103:8526..8859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6103 8527..8859 -
1691481405.8417335-CDS-H-paniculata_contig6103:8526..88591691481405.8417335-CDS-H-paniculata_contig6103:8526..8859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6103 8527..8859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6103.13807.1

>prot_H-paniculata_contig6103.13807.1 ID=prot_H-paniculata_contig6103.13807.1|Name=mRNA_H-paniculata_contig6103.13807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MLIFVVFSYAALGYCLATLLTCCSPCMHVTHSSRCARRVHVFRCTWFVYH
TMQTASGGTNVRKTVEPLSEILRTEPKDAVLLLLSPQAPCGSFFVYGGWV
GGPGRESDVRLVDIAQPQPPPPSDDLVNFPGMPNIPPAVSGATAGDVSAP
GEDIQGSPPHGAEAQGNGASGEGEHGEGLRRRVGAGVGGNS*
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mRNA from alignment at H-paniculata_contig6103:6304..8887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6103.13807.1 ID=mRNA_H-paniculata_contig6103.13807.1|Name=mRNA_H-paniculata_contig6103.13807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2584bp|location=Sequence derived from alignment at H-paniculata_contig6103:6304..8887- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGATCTCGGGGTGGCCTTCCTTGTGTATGTTGATTTTTGTCGTTTTTT
CCTATGCCGCACTAGGCTATTGCCTTGCTACTCTGTTGACATGCTGTTCT
CCTTGTATGCACGTTACACACTCGAGTCGCTGCGCTCGCCGTGTTCACGT
CTTTCGTTGCACGTGGTTTGTATATCACACAATGCAGACCGCCTCGGGAG
GTACTAATGTGCGAAAGACAGTGGAGCCTCTGTCAGAAATACTGCGCACA
GAGCCCAAGGATGCGGTATTGCTCCTGCTCAGCCCGCAAGCGCCGTGCGG
GAGCTTCTTCGTTTATGGTGGATGGGTCGGCGGGCCGGGCCGAGAGAGCG
ACGTGCGATTGGTGAGTAGAGTAGCCTGGGGATCGAAGCAATTTACTCCC
TCCCCTCATTTTTATTTATTTTTCTATACCCCGTTTAATCGCTCGGACCC
GCGGTCATAGGATAAAAGTTGAAGATAGTCTGTGTGTACAGAAGTAACTG
TAGCACATACCCCGCCCCCTACCCGCTGCCGCCGCCGCCGCCGCCGCCCA
ACAGGCCGTTTTTTGTCTTCTTTTTTCCTTGCTATCATTTTCGTTCCCGC
CACCTGCCCTGATATGAACCATTTCAACGCGATACTTTTTCAAAATATGT
CTGCCGCGAGGTGGAGCAATCGTACACAGAATATATATTAGTACTGATGA
GAATATCGTCATACTACAGTGGGACATAGTAAGCGAAAGAGATTATCTCA
TTATTCAAGTCGTTTTCGTTTCCCAAAATTTGGCGCAATTTTGGGGTCTT
AACGCCAGTTAATAGGTCATATCTTGCTGAATAAAAAAGAATCACAGCAC
AAACCAGGTAAGTTCGGATACCTCCCGGTGTATTCGGAGCATTGCGGTAG
TTTAATTTACCGAGGCGGGAATTTTCGTCGAAAAAAGGCCCGCACAAGTA
TCACACAGTACCGTCAAAACCTTTGGAGGAGTTGCAATCCGTTCTCCCTG
CCGAACCACGACCGCGGCGGGGTTGGGACCACGTGGGGCTTCTTCCATTA
GACATTGGTCGATGATCTGTAAACGGGTTTTTGCTGATTTGTTGAGCAGG
GCTTGTTGTGAAGGTCAGGGTTTCTGCTGTTTGTGGAGCTCGGTTTTTGG
TGCAATATAAATCGAATTTTTTATAACGTATTTTCCCAACATGTCGCCAG
TGTTGATGGAAACGGCATCCTCGTGTTTATTGAGTTTTTTATAACGTCTG
TCGTGCGATTTTCCCAACGTGTCGTCAGCAAAGGTTGGAGAATATTGATG
GAAACGGCATCCTCTGTCTCAACAAACGCGTCAACAAATGCCTGTCTCCT
CACGAAAATGGCCATGTTCAGATTATCCCCCCCCCCCCCCCCCAAATTAA
AAAAAAAAAAAGTTGACTTGTTCAAATTTCCGTTTCTATGCGAAAACAAA
ATATTTTTCTCTGCAGATTCTTTATATATAATTTTTTTTCGGGGCCTGCA
TTTACGACTAAACTCAAGGATTTTCAAATTGGTGCCCTACATCTGGAGGA
ATACCGTGTATTACACGTTTATCCGTGACAACCCGGCATGTTCGAGTTGC
TGGTAAAGAAAAAGTATATATGTTTCTGAATGTTTCTCCGCAAGAAAGAA
AAAATGGATTTTTCACGACGGATTTTTTCTTCATGTCGCCATTGTCACTT
TCAGCAATATAGCAAAATATCAATGGAAAGGGCAACCTCTATCTCAAGAT
TTACTACAAAATCCGCCTACCTCCGTGCAACATCGCCATATCCCAATTCC
TATGGGAATTTTTTACTTTTTAAGCGGTTCTATTGTAGCACTAAATAGGT
ATTTTTACAAACGGATTGCGTCTACACTTTTTGTTTTTAATCATACCTGG
GAACGTGTGAAGGCGTTTTTCGATTTTCGATGTACTGGTGGAGAAACCCG
AAAAAAAAACAGTTTTTCCCATCGTAAATTTATGCGAATTTCGACTATTT
TCCTTACTCCTAGGAAAGTACGCTTTTTTAGCTCTAACTTTTCGAATTTT
CATTTATTTATTTAAAAAAAATATTCTGAACGGATTTTTGCTTTTTTTTT
TTTATGTGGATCTTCCGCAAAAATCCGTGTTCCATCCCGATTCGTATTCA
TTGAAACATGCAGCATACTCTACTTGATTTTCGAAATTACCTCATTTTTT
TATTTGTTTTCCATATTTTGTTTGTTTTTTCATTTCTTTTCCTTTTTTTT
GCAGGTGGACATAGCCCAGCCTCAGCCCCCACCACCATCAGACGACCTTG
TCAACTTCCCCGGCATGCCCAATATCCCGCCTGCAGTCAGCGGCGCTACT
GCGGGAGACGTCAGCGCTCCCGGGGAAGACATACAGGGTTCCCCCCCTCA
TGGTGCCGAGGCGCAGGGCAATGGCGCCTCGGGAGAGGGTGAGCATGGGG
AGGGGCTACGGCGTAGAGTAGGCGCAGGGGTAGGGGGCAATTCTTGACAC
ATTAGTACTATTATTGATGGGTTATGACCTATTTACCTACCTGGCCGTTC
CTTTGGGGGATGTGTTGTAGTGTGCGGGCAGATC
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Coding sequence (CDS) from alignment at H-paniculata_contig6103:6304..8887-

>mRNA_H-paniculata_contig6103.13807.1 ID=mRNA_H-paniculata_contig6103.13807.1|Name=mRNA_H-paniculata_contig6103.13807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig6103:6304..8887- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGATTTTTGTCGTTTTTTCCTATGCCGCACTAGGCTATTGCCTTGC
TACTCTGTTGACATGCTGTTCTCCTTGTATGCACGTTACACACTCGAGTC
GCTGCGCTCGCCGTGTTCACGTCTTTCGTTGCACGTGGTTTGTATATCAC
ACAATGCAGACCGCCTCGGGAGGTACTAATGTGCGAAAGACAGTGGAGCC
TCTGTCAGAAATACTGCGCACAGAGCCCAAGGATGCGGTATTGCTCCTGC
TCAGCCCGCAAGCGCCGTGCGGGAGCTTCTTCGTTTATGGTGGATGGGTC
GGCGGGCCGGGCCGAGAGAGCGACGTGCGATTGATGTTGATTTTTGTCGT
TTTTTCCTATGCCGCACTAGGCTATTGCCTTGCTACTCTGTTGACATGCT
GTTCTCCTTGTATGCACGTTACACACTCGAGTCGCTGCGCTCGCCGTGTT
CACGTCTTTCGTTGCACGTGGTTTGTATATCACACAATGCAGACCGCCTC
GGGAGGTACTAATGTGCGAAAGACAGTGGAGCCTCTGTCAGAAATACTGC
GCACAGAGCCCAAGGATGCGGTATTGCTCCTGCTCAGCCCGCAAGCGCCG
TGCGGGAGCTTCTTCGTTTATGGTGGATGGGTCGGCGGGCCGGGCCGAGA
GAGCGACGTGCGATTGGTGGACATAGCCCAGCCTCAGCCCCCACCACCAT
CAGACGACCTTGTCAACTTCCCCGGCATGCCCAATATCCCGCCTGCAGTC
AGCGGCGCTACTGCGGGAGACGTCAGCGCTCCCGGGGAAGACATACAGGG
TTCCCCCCCTCATGGTGCCGAGGCGCAGGGCAATGGCGCCTCGGGAGAGG
GTGAGCATGGGGAGGGGCTACGGCGTAGAGTAGGCGCAGGGGTAGGGGGC
AATTCTTGAGTGGACATAGCCCAGCCTCAGCCCCCACCACCATCAGACGA
CCTTGTCAACTTCCCCGGCATGCCCAATATCCCGCCTGCAGTCAGCGGCG
CTACTGCGGGAGACGTCAGCGCTCCCGGGGAAGACATACAGGGTTCCCCC
CCTCATGGTGCCGAGGCGCAGGGCAATGGCGCCTCGGGAGAGGGTGAGCA
TGGGGAGGGGCTACGGCGTAGAGTAGGCGCAGGGGTAGGGGGCAATTCTT
GA
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