mRNA_H-paniculata_contig61000.13804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61000.13804.1
Unique NamemRNA_H-paniculata_contig61000.13804.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: UPI000B8AF143 (uncharacterized protein LOC110794847 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF143)

HSP 1 Score: 55.1 bits (131), Expect = 5.130e-8
Identity = 24/80 (30.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP-APVARTKMVSLLAAIQDWELRYVDFEQAYL 237
            P +K  + +  +YK  + +DG +E+ + RLVA G+RQ+K+ +++   SP A  +  +M+  LA +++W++  +D   A++
Sbjct:   20 PPDKKAIDSKWVYKVNLNKDGFLERLKARLVARGDRQMKEKYYKHTFSPVANFSTVRMLVALATLRNWKVHQLDINNAFM 99          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A5B5T2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B5T2_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 3.290e-7
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 VVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
            V+ +  I++ K   DG +++Y+ RLVA G +Q   + F +  SP   A T ++V  LA   +WE+R +DF  A+L
Sbjct:  532 VIDSKWIFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFTDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFL 606          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 51.6 bits (122), Expect = 5.610e-7
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP 147
            P+  +++   +++KRKIG DGKVE Y+ RLVA G RQ +++ ++E  SP
Sbjct:   20 PEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A438FXI0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FXI0_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 6.140e-7
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 VVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
            V+ +  I++ K   DG +++Y+ RLVA G +Q   + F +  SP   A T ++V  LA   +WE+R +DF  A+L
Sbjct:  602 VIDSKWIFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFIDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFL 676          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A5BFQ2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BFQ2_VITVI)

HSP 1 Score: 54.7 bits (130), Expect = 8.120e-7
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 VVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
            V+ +  I++ K   DG +++Y+ RLVA G +Q   + F +  +P   A T ++V  LA   +WE+R +DF  A+L
Sbjct:  183 VIXSKWIFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFTDTFNPVIKASTIRVVFTLAVTYNWEIRQIDFNNAFL 257          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A151T1T1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T1T1_CAJCA)

HSP 1 Score: 54.7 bits (130), Expect = 8.460e-7
Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP-APVARTKMVSLLAAIQDWELRYVDFEQAYL 237
            P +K  +    +YK K   DG +++Y+ RLVA G  Q++ + F +  SP A +   +++  LAAI +W L+ +D   A+L
Sbjct:  838 PPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFL 917          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2S6BTL3_9PEZI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cercospora berteroae TaxID=357750 RepID=A0A2S6BTL3_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 1.090e-6
Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEA-SSPAPVARTKMVSLLAAIQDWELRYVDFEQAYL 237
            P  +  ++  ++Y+RKIG+DGKV KY+ RLVA G +Q +   F E  S     A  + +  L A   W+   +DF  A+L
Sbjct:  105 PPGRKPLTVRLVYRRKIGKDGKVSKYKVRLVARGFQQREGFDFTETYSGVVKTAAYRTIFALMAALGWKCHQMDFVTAFL 184          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2K3N6U7_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N6U7_TRIPR)

HSP 1 Score: 53.9 bits (128), Expect = 1.510e-6
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART---KMVSLLAAIQDWELRYVDFEQAYL 237
            P     +    IYK K+ E GKVEKY+ RL+A G  Q   I+F+E    APVAR    + V  +AA + W L  +D + A+L
Sbjct:   51 PSGSKKIGVKWIYKTKLNEKGKVEKYKARLIAKGYSQQYGIYFKEVF--APVARRDTIRTVLSIAASKSWILYQLDVKSAFL 130          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: UPI000D630AD2 (probable LRR receptor-like serine/threonine-protein kinase At3g47570 n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D630AD2)

HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    7 NKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPA-PVARTKMVSLLAAIQDWELRYVDFEQAYL 237
            N+ VV    +Y+ K   DG V KY+ RLVA G +QI+ +++ +  SP    A  ++V  LA +  W +R VD   A+L
Sbjct:   48 NQKVVGNKWVYRIKYNTDGSVAKYKARLVAKGFQQIEGVNYFDTFSPVIKPATVRVVLSLAVMNQWIVRQVDVNNAFL 125          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY)

HSP 1 Score: 53.5 bits (127), Expect = 2.160e-6
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 1
Query:    1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
            P  ++ V    ++K K   DG V +Y+ RL+A G  Q+    F +  SP     T  +V  LA   DWELR+VD   A+L
Sbjct:  939 PAGRIPVGCKWLFKLKRNPDGSVNRYKARLIAKGYSQVTSYDFTDMFSPVLKFSTFNVVLALAVSNDWELRHVDVNNAFL 1018          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B8AF1435.130e-830.00uncharacterized protein LOC110794847 n=1 Tax=Spina... [more]
A5B5T2_VITVI3.290e-736.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0HGX5_PUNGR5.610e-744.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FXI0_VITVI6.140e-736.00Retrovirus-related Pol polyprotein from transposon... [more]
A5BFQ2_VITVI8.120e-734.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T1T1_CAJCA8.460e-733.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A2S6BTL3_9PEZI1.090e-636.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3N6U7_TRIPR1.510e-640.24Retrotransposon-related protein n=1 Tax=Trifolium ... [more]
UPI000D630AD21.590e-637.18probable LRR receptor-like serine/threonine-protei... [more]
A0A6A3A122_HIBSY2.160e-636.25Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61000contigH-paniculata_contig61000:675..914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size213
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930685.3300154-UTR-H-paniculata_contig61000:674..7011622930685.3300154-UTR-H-paniculata_contig61000:674..701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig61000 675..701 +
1691481405.749904-UTR-H-paniculata_contig61000:674..7011691481405.749904-UTR-H-paniculata_contig61000:674..701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig61000 675..701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930685.3507743-CDS-H-paniculata_contig61000:701..9141622930685.3507743-CDS-H-paniculata_contig61000:701..914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61000 702..914 +
1691481405.760829-CDS-H-paniculata_contig61000:701..9141691481405.760829-CDS-H-paniculata_contig61000:701..914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61000 702..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61000.13804.1prot_H-paniculata_contig61000.13804.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61000 702..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61000.13804.1

>prot_H-paniculata_contig61000.13804.1 ID=prot_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVARTKMVS
LLAAIQDWELRYVDFEQAYL*
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mRNA from alignment at H-paniculata_contig61000:675..914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61000.13804.1 ID=mRNA_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig61000:675..914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAGAACAAGCTGGTCGTGAGCACAATGATGATCTACAAAAGGAAAAT CGGCGAGGATGGTAAAGTGGAGAAATATCAGTGCCGCCTGGTCGCCCACG GAAACCGTCAGATCAAGGACATCCACTTCCAGGAAGCTTCGTCCCCTGCA CCCGTAGCCAGGACAAAAATGGTGTCGTTGCTTGCCGCAATCCAGGACTG GGAGCTACGGTACGTCGATTTTGAACAAGCGTACTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig61000:675..914+

>mRNA_H-paniculata_contig61000.13804.1 ID=mRNA_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig61000:675..914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATCTACAAAAGGAAAATCGGCGAGGATGGTAAAGTGGAGAAATA
TCAGTGCCGCCTGGTCGCCCACGGAAACCGTCAGATCAAGGACATCCACT
TCCAGGAAGCTTCGTCCCCTGCACCCGTAGCCAGGACAAAAATGGTGTCG
TTGCTTGCCGCAATCCAGGACTGGGAGCTACGGTACGTCGATTTTGAACA
AGCGTACTTGTAGATGATGATCTACAAAAGGAAAATCGGCGAGGATGGTA
AAGTGGAGAAATATCAGTGCCGCCTGGTCGCCCACGGAAACCGTCAGATC
AAGGACATCCACTTCCAGGAAGCTTCGTCCCCTGCACCCGTAGCCAGGAC
AAAAATGGTGTCGTTGCTTGCCGCAATCCAGGACTGGGAGCTACGGTACG
TCGATTTTGAACAAGCGTACTTGTAG
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