mRNA_H-paniculata_contig61000.13804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: UPI000B8AF143 (uncharacterized protein LOC110794847 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF143) HSP 1 Score: 55.1 bits (131), Expect = 5.130e-8 Identity = 24/80 (30.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP-APVARTKMVSLLAAIQDWELRYVDFEQAYL 237
P +K + + +YK + +DG +E+ + RLVA G+RQ+K+ +++ SP A + +M+ LA +++W++ +D A++
Sbjct: 20 PPDKKAIDSKWVYKVNLNKDGFLERLKARLVARGDRQMKEKYYKHTFSPVANFSTVRMLVALATLRNWKVHQLDINNAFM 99
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A5B5T2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B5T2_VITVI) HSP 1 Score: 55.8 bits (133), Expect = 3.290e-7 Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 VVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
V+ + I++ K DG +++Y+ RLVA G +Q + F + SP A T ++V LA +WE+R +DF A+L
Sbjct: 532 VIDSKWIFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFTDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFL 606
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR) HSP 1 Score: 51.6 bits (122), Expect = 5.610e-7 Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1
Query: 1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP 147
P+ +++ +++KRKIG DGKVE Y+ RLVA G RQ +++ ++E SP
Sbjct: 20 PEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A438FXI0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FXI0_VITVI) HSP 1 Score: 55.1 bits (131), Expect = 6.140e-7 Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 VVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
V+ + I++ K DG +++Y+ RLVA G +Q + F + SP A T ++V LA +WE+R +DF A+L
Sbjct: 602 VIDSKWIFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFIDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFL 676
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A5BFQ2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BFQ2_VITVI) HSP 1 Score: 54.7 bits (130), Expect = 8.120e-7 Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 VVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
V+ + I++ K DG +++Y+ RLVA G +Q + F + +P A T ++V LA +WE+R +DF A+L
Sbjct: 183 VIXSKWIFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFTDTFNPVIKASTIRVVFTLAVTYNWEIRQIDFNNAFL 257
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A151T1T1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T1T1_CAJCA) HSP 1 Score: 54.7 bits (130), Expect = 8.460e-7 Identity = 27/80 (33.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP-APVARTKMVSLLAAIQDWELRYVDFEQAYL 237
P +K + +YK K DG +++Y+ RLVA G Q++ + F + SP A + +++ LAAI +W L+ +D A+L
Sbjct: 838 PPHKTAIGCRWVYKVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFL 917
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2S6BTL3_9PEZI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cercospora berteroae TaxID=357750 RepID=A0A2S6BTL3_9PEZI) HSP 1 Score: 54.3 bits (129), Expect = 1.090e-6 Identity = 29/80 (36.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEA-SSPAPVARTKMVSLLAAIQDWELRYVDFEQAYL 237
P + ++ ++Y+RKIG+DGKV KY+ RLVA G +Q + F E S A + + L A W+ +DF A+L
Sbjct: 105 PPGRKPLTVRLVYRRKIGKDGKVSKYKVRLVARGFQQREGFDFTETYSGVVKTAAYRTIFALMAALGWKCHQMDFVTAFL 184
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2K3N6U7_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N6U7_TRIPR) HSP 1 Score: 53.9 bits (128), Expect = 1.510e-6 Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART---KMVSLLAAIQDWELRYVDFEQAYL 237
P + IYK K+ E GKVEKY+ RL+A G Q I+F+E APVAR + V +AA + W L +D + A+L
Sbjct: 51 PSGSKKIGVKWIYKTKLNEKGKVEKYKARLIAKGYSQQYGIYFKEVF--APVARRDTIRTVLSIAASKSWILYQLDVKSAFL 130
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: UPI000D630AD2 (probable LRR receptor-like serine/threonine-protein kinase At3g47570 n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D630AD2) HSP 1 Score: 53.9 bits (128), Expect = 1.590e-6 Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 7 NKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPA-PVARTKMVSLLAAIQDWELRYVDFEQAYL 237
N+ VV +Y+ K DG V KY+ RLVA G +QI+ +++ + SP A ++V LA + W +R VD A+L
Sbjct: 48 NQKVVGNKWVYRIKYNTDGSVAKYKARLVAKGFQQIEGVNYFDTFSPVIKPATVRVVLSLAVMNQWIVRQVDVNNAFL 125
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY) HSP 1 Score: 53.5 bits (127), Expect = 2.160e-6 Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 1
Query: 1 PKNKLVVSTMMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 237
P ++ V ++K K DG V +Y+ RL+A G Q+ F + SP T +V LA DWELR+VD A+L
Sbjct: 939 PAGRIPVGCKWLFKLKRNPDGSVNRYKARLIAKGYSQVTSYDFTDMFSPVLKFSTFNVVLALAVSNDWELRHVDVNNAFL 1018 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig61000.13804.1 >prot_H-paniculata_contig61000.13804.1 ID=prot_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp MMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVARTKMVSback to top mRNA from alignment at H-paniculata_contig61000:675..914+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig61000.13804.1 ID=mRNA_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig61000:675..914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig61000:675..914+ >mRNA_H-paniculata_contig61000.13804.1 ID=mRNA_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig61000:675..914+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |