mRNA_H-paniculata_contig60987.13797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60987.13797.1
Unique NamemRNA_H-paniculata_contig60987.13797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A6H5K988_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K988_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.190e-23
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            + QLNSQGVYCSL TGQEKR VPFATHVSCTIEMAS    +EVAVIDEIQM+ D QRG +WT
Sbjct:  548 YEQLNSQGVYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWT 609
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: D8LD59_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD59_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.200e-23
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            + QLNSQGVYCSL TGQEKR VPFATHVSCTIEMAS    +EVAVIDEIQM+ D QRG +WT
Sbjct:  620 YEQLNSQGVYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWT 681
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A6G0X0Y1_9STRA (RNA helicase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0Y1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.110e-20
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            +  LN  GVYCSL TG+EKR +P ATHVSCT+EM S T P++VAV+DEIQM+ DP+RG  WT
Sbjct:  241 YETLNMDGVYCSLITGEEKREIPLATHVSCTVEMCSSTTPYDVAVVDEIQMIGDPERGWAWT 302
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A7S2CVW9_9STRA (RNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVW9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.020e-20
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            + +LN  GVYC+L TGQEK+ VPFA HV+CT+EM S+++ ++VAVIDEIQM+ +  RG +WT
Sbjct:   33 YEELNRDGVYCTLVTGQEKKEVPFAKHVACTMEMTSISETYDVAVIDEIQMIGNSSRGHSWT 94
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A6I9S3R6_ELAGV (RNA helicase n=2 Tax=Cocoseae TaxID=169705 RepID=A0A6I9S3R6_ELAGV)

HSP 1 Score: 91.7 bits (226), Expect = 3.870e-20
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            F ++NS GVYCSL+TGQEK+SVPF+ HV+CTIEM S  Q ++VAVIDEIQM+ DP RG  WT
Sbjct:  284 FDKVNSLGVYCSLHTGQEKKSVPFSNHVACTIEMVSTEQLYDVAVIDEIQMMADPTRGYAWT 345
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A329RZ63_9STRA (RNA helicase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RZ63_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.300e-20
Identity = 39/62 (62.90%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            F ++NS G+Y SL TGQEK+ VP++THVSCT+EMA++ +P++VAVIDEIQ++ DPQRG  WT
Sbjct:  242 FERMNSDGLYTSLVTGQEKKLVPYSTHVSCTVEMANINRPWDVAVIDEIQLIGDPQRGWAWT 303
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A3M6VRU9_9STRA (RNA helicase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRU9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.220e-20
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            F ++NS G Y SL TGQEK+ VP++THVSCT+EMA++ +P++VAVIDEIQ++ DPQRG  WT
Sbjct:  239 FERMNSDGFYTSLVTGQEKKMVPYSTHVSCTVEMANINRPWDVAVIDEIQLIGDPQRGWAWT 300
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: A0A3R7GQW8_9STRA (RNA helicase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GQW8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.840e-20
Identity = 39/62 (62.90%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            F +LNS G+Y SL TGQEK+ VP+++HVSCT+EMA++ +P++VAVIDEIQ++ DPQRG  WT
Sbjct:  172 FERLNSDGLYTSLVTGQEKKIVPYSSHVSCTVEMANINRPWDVAVIDEIQLIGDPQRGWAWT 233
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: D0NHU6_PHYIT (RNA helicase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NHU6_PHYIT)

HSP 1 Score: 90.5 bits (223), Expect = 9.870e-20
Identity = 38/62 (61.29%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            F +LN+ G+Y SL TGQEK+ VP++THVSCT+EMA++ +P++VAV+DEIQ++ DPQRG  WT
Sbjct:  304 FERLNADGLYTSLVTGQEKKLVPYSTHVSCTVEMANINRPWDVAVVDEIQLIGDPQRGWAWT 365
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BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Match: G4YHR7_PHYSP (RNA helicase n=5 Tax=Phytophthora TaxID=4783 RepID=G4YHR7_PHYSP)

HSP 1 Score: 90.1 bits (222), Expect = 1.340e-19
Identity = 38/62 (61.29%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQMVDDPQRGQNWT 186
            + ++NS G+Y SL TGQEK+ VP++THVSCT+EMA++ +P++VAVIDEIQ++ DPQRG  WT
Sbjct:  157 YERMNSDGLYTSLVTGQEKKIVPYSTHVSCTVEMANINRPWDVAVIDEIQLIGDPQRGWAWT 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60987.13797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K988_9PHAE2.190e-2377.42RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LD59_ECTSI2.200e-2377.42RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6G0X0Y1_9STRA1.110e-2064.52RNA helicase n=1 Tax=Aphanomyces euteiches TaxID=1... [more]
A0A7S2CVW9_9STRA3.020e-2058.06RNA helicase (Fragment) n=1 Tax=Dictyocha speculum... [more]
A0A6I9S3R6_ELAGV3.870e-2067.74RNA helicase n=2 Tax=Cocoseae TaxID=169705 RepID=A... [more]
A0A329RZ63_9STRA5.300e-2062.90RNA helicase n=1 Tax=Phytophthora cactorum TaxID=2... [more]
A0A3M6VRU9_9STRA7.220e-2062.90RNA helicase n=1 Tax=Peronospora effusa TaxID=5428... [more]
A0A3R7GQW8_9STRA9.840e-2062.90RNA helicase n=4 Tax=Phytophthora kernoviae TaxID=... [more]
D0NHU6_PHYIT9.870e-2061.29RNA helicase n=2 Tax=Phytophthora infestans TaxID=... [more]
G4YHR7_PHYSP1.340e-1961.29RNA helicase n=5 Tax=Phytophthora TaxID=4783 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60987contigH-paniculata_contig60987:603..788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D8LD59
Preferred nameSUPV3L1
KEGG rclassRC00061
KEGG koko:K03942,ko:K17675
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000003,GO:0000166,GO:0000177,GO:0000178,GO:0000372,GO:0000375,GO:0000376,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000965,GO:0001410,GO:0001558,GO:0001889,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006310,GO:0006325,GO:0006378,GO:0006396,GO:0006397,GO:0006399,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007005,GO:0007275,GO:0008026,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009268,GO:0009295,GO:0009607,GO:0009628,GO:0009651,GO:0009653,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010570,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010928,GO:0010929,GO:0010941,GO:0015980,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019954,GO:0022900,GO:0022904,GO:0023051,GO:0023056,GO:0030154,GO:0030307,GO:0030435,GO:0030436,GO:0030447,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0032042,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032990,GO:0032991,GO:0034248,GO:0034250,GO:0034458,GO:0034470,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035639,GO:0035690,GO:0035945,GO:0035946,GO:0036094,GO:0036177,GO:0036180,GO:0036187,GO:0040007,GO:0040008,GO:0042221,GO:0042493,GO:0042623,GO:0042645,GO:0042710,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043631,GO:0043934,GO:0043936,GO:0043954,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0044764,GO:0045025,GO:0045333,GO:0045727,GO:0045927,GO:0045935,GO:0046034,GO:0046483,GO:0046700,GO:0046983,GO:0047484,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051703,GO:0051704,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070129,GO:0070131,GO:0070584,GO:0070784,GO:0070827,GO:0070887,GO:0071025,GO:0071026,GO:0071103,GO:0071214,GO:0071467,GO:0071704,GO:0071840,GO:0072521,GO:0080036,GO:0080038,GO:0080090,GO:0080134,GO:0090304,GO:0090605,GO:0090609,GO:0090615,GO:0090616,GO:0090646,GO:0097159,GO:0097222,GO:0097367,GO:0098798,GO:0104004,GO:0140053,GO:0140097,GO:0140098,GO:1900428,GO:1901000,GO:1901002,GO:1901135,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1902494,GO:1902584,GO:1903311,GO:1905354,GO:2000070,GO:2000112,GO:2000827
EggNOG free text desc.mitochondrial RNA 3'-end processing
EggNOG OGsKOG0953@1,KOG0953@2759
EC1.6.5.3,1.6.99.3,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930682.931154-CDS-H-paniculata_contig60987:602..7881622930682.931154-CDS-H-paniculata_contig60987:602..788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60987 603..788 +
1691481404.4283178-CDS-H-paniculata_contig60987:602..7881691481404.4283178-CDS-H-paniculata_contig60987:602..788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60987 603..788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60987.13797.1prot_H-paniculata_contig60987.13797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60987 603..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60987.13797.1

>prot_H-paniculata_contig60987.13797.1 ID=prot_H-paniculata_contig60987.13797.1|Name=mRNA_H-paniculata_contig60987.13797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
FTQLNSQGVYCSLYTGQEKRSVPFATHVSCTIEMASLTQPFEVAVIDEIQ
MVDDPQRGQNWT
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mRNA from alignment at H-paniculata_contig60987:603..788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60987.13797.1 ID=mRNA_H-paniculata_contig60987.13797.1|Name=mRNA_H-paniculata_contig60987.13797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig60987:603..788+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCACGCAGCTGAACAGCCAGGGTGTGTACTGCAGCCTATACACGGGGCA
GGAGAAGCGCAGTGTTCCGTTCGCGACGCATGTGTCATGCACCATCGAGA
TGGCGTCCTTGACGCAGCCTTTCGAGGTGGCAGTGATCGACGAGATCCAG
ATGGTGGACGACCCTCAGAGAGGGCAGAACTGGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig60987:603..788+

>mRNA_H-paniculata_contig60987.13797.1 ID=mRNA_H-paniculata_contig60987.13797.1|Name=mRNA_H-paniculata_contig60987.13797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig60987:603..788+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCACGCAGCTGAACAGCCAGGGTGTGTACTGCAGCCTATACACGGGGCA
GGAGAAGCGCAGTGTTCCGTTCGCGACGCATGTGTCATGCACCATCGAGA
TGGCGTCCTTGACGCAGCCTTTCGAGGTGGCAGTGATCGACGAGATCCAG
ATGGTGGACGACCCTCAGAGAGGGCAGAACTGGACCTTCACGCAGCTGAA
CAGCCAGGGTGTGTACTGCAGCCTATACACGGGGCAGGAGAAGCGCAGTG
TTCCGTTCGCGACGCATGTGTCATGCACCATCGAGATGGCGTCCTTGACG
CAGCCTTTCGAGGTGGCAGTGATCGACGAGATCCAGATGGTGGACGACCC
TCAGAGAGGGCAGAACTGGACC
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