mRNA_H-paniculata_contig609.13789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig609.13789.1
Unique NamemRNA_H-paniculata_contig609.13789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.940e-35
Identity = 65/100 (65.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    4 TIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLV 303
            TIDA WY++WY D  LPA+K  MPWL  + VVVQQDGA+PHTG   P  LN  G   GW V LVTQPAQSPD NINDLG FASLK RVW     SID LV
Sbjct:  265 TIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 84.3 bits (207), Expect = 1.090e-17
Identity = 43/110 (39.09%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   49 LPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            +P++K  + W  G+ V +Q D A PH   D P  +     DGGW +++  QPA SPDFN+NDLGFFAS++S   +++  +I+ LV  V+  Y+  + +T++ V   LQ+V
Sbjct:   22 IPSVK--VVWPSGKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSV 128          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN)

HSP 1 Score: 84.3 bits (207), Expect = 6.320e-17
Identity = 43/110 (39.09%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   49 LPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            +P++K  + W  G+ V +Q D A PH   D P  +     DGGW +++  QPA SPDFN+NDLGFFAS++S   +++  +I+ LV  V+  Y+  + +T++ V   LQ+V
Sbjct:  123 IPSVK--VVWPSGKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSV 229          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A024T8J6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8J6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.430e-17
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 VTIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            V +DA  Y+++     +PA+KG  P    + VV+Q D ATPH G  T   L  +  D GW   L  QP  SPD N+ DLGFFAS++S  ++    S+D ++      ++ CD+ +L  V   LQAV
Sbjct:    7 VNVDAEVYRDYIFTRVIPAIKGKFP-TSTKRVVIQHDNATPH-GGITNEDLASVSTD-GWTFVLRRQPPNSPDLNVLDLGFFASIQSLQYKLVSRSVDDVIRATLVAFELCDSESLAKVFLTLQAV 129          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: V9F261_PHYPR (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F261_PHYPR)

HSP 1 Score: 84.0 bits (206), Expect = 2.550e-16
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   49 LPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            +P++K    W  G+ V +Q D A PH   D P  +     DGGW +++  QPA SPDFN+NDLGFFAS++S   +++  +I+ LV  V+  Y+  + +T++ V   LQ+V
Sbjct:    3 IPSVKA--VWPSGKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVSNVEEAYNQLEYSTIDKVFVTLQSV 109          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A6G0WL62_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WL62_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.170e-16
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 VTIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            +T+    Y+++  +  +P +K   P    + + +QQD A PH   D P  L   G   GW + L +QPA SPDFN+ DLGFF S+++   RE    ID LV  V   +D  D   L+     LQ V
Sbjct:   52 ITVTKKVYRQYLLEHVIPTIKKVWPGRRSQAIYIQQDNARPHDEVDGPAVLM-AGSSEGWTIQLASQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRAFDDLDWRVLDKTLSTLQGV 176          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A485KWU1_9STRA (Aste57867_12674 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWU1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.840e-16
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 VTIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            V +DA  Y+++  +  +PA+K + P    + VV+Q D ATPH G+ T R L  +  D GW   +  QP  SPD N+ DLGFFAS++S  ++    ++D ++      +DA  +  LE V   LQAV
Sbjct:   27 VNVDAAVYRDFVINKVVPAIKASFP-SASKRVVLQHDNATPH-GSVTDRDLEAVSSD-GWTFVVRAQPPNSPDLNVLDLGFFASIQSLQYKTMSRTVDDVIRSTLAAFDALCSDKLECVFLTLQAV 149          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.390e-15
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 VTIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYD 327
            +T+    Y+ +  D  +PA++   P   G  + VQQD A PH   D P  L   GR  GW + L+ QPAQSPDFN+ DLGFF +++S   +    +ID L++ V+  ++
Sbjct:  259 MTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFE 366          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A6A4Z8Y7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Z8Y7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.680e-15
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 VTIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAV 378
            V +DA  Y+++  +  +PA+K + P    + VV+Q D ATPH G+ T R L  +  D GW   +  QP  SPD N+ DLGFFAS++S  ++    ++D ++      +DA  +  LE V   LQAV
Sbjct:  149 VNVDAAVYRDFVINKVVPAIKASFP-SASKRVVLQHDNATPH-GSVTDRDLEAVSSD-GWTFVVRAQPPNSPDLNVLDLGFFASIQSLQYKTMSRTVDDVIRSTLAAFDALCSDKLECVFLTLQAV 271          
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Match: A0A6A3WM28_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WM28_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.460e-15
Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 1
Query:    1 VTIDAMWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIGRDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVKTMYDACDAATLEAVAEPLQAVQSGL 390
            V++  + Y++   D  LPA +  +P   G  V VQQD A PH   D   ++   G+  GWK+ +  QP +SP+ N+ DLGFFAS+++  +R+     + L+E V+  +D     TL+     LQ V   +
Sbjct:   51 VSMTRVLYRKLLVDKVLPAFRAKLPVRRGTTVFVQQDNAGPHVREDDT-EVETAGKVDGWKIKMRCQPPRSPELNVLDLGFFASIQALQYRKAKYDTNGLIEAVQEAFDEVKWQTLDKCFVTLQKVMEAI 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig609.13789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE5.940e-3565.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A081AGH7_PHYPR1.090e-1739.09Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
W2PEH8_PHYPN6.320e-1739.09Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A024T8J6_9STRA9.430e-1738.10Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
V9F261_PHYPR2.550e-1639.09DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6G0WL62_9STRA5.170e-1635.71Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KWU1_9STRA6.840e-1637.30Aste57867_12674 protein n=2 Tax=Aphanomyces stella... [more]
A0A6A5AA16_9STRA1.390e-1537.61Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4Z8Y7_9STRA2.680e-1537.30Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A6A3WM28_9STRA3.460e-1533.08Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig609contigH-paniculata_contig609:5429..5836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue9e-15
Seed eggNOG ortholog4792.ETI44833
Hectar predicted targeting categoryother localisation
EggNOG OGs2EP7I@1,2SSFX@2759,3QHT7@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930681.5224423-CDS-H-paniculata_contig609:5428..58211622930681.5224423-CDS-H-paniculata_contig609:5428..5821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig609 5429..5821 -
1691481403.8802555-CDS-H-paniculata_contig609:5428..58211691481403.8802555-CDS-H-paniculata_contig609:5428..5821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig609 5429..5821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930681.5364838-UTR-H-paniculata_contig609:5821..58361622930681.5364838-UTR-H-paniculata_contig609:5821..5836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig609 5822..5836 -
1691481403.8950057-UTR-H-paniculata_contig609:5821..58361691481403.8950057-UTR-H-paniculata_contig609:5821..5836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig609 5822..5836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig609.13789.1prot_H-paniculata_contig609.13789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig609 5429..5821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig609.13789.1

>prot_H-paniculata_contig609.13789.1 ID=prot_H-paniculata_contig609.13789.1|Name=mRNA_H-paniculata_contig609.13789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MWYQEWYKDSFLPALKGNMPWLEGEEVVVQQDGATPHTGNDTPRKLNEIG
RDGGWKVNLVTQPAQSPDFNINDLGFFASLKSRVWRERYGSIDCLVERVK
TMYDACDAATLEAVAEPLQAVQSGLESARG*
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mRNA from alignment at H-paniculata_contig609:5429..5836-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig609.13789.1 ID=mRNA_H-paniculata_contig609.13789.1|Name=mRNA_H-paniculata_contig609.13789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig609:5429..5836- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAACCATTGACGCCATGTGGTACCAGGAGTGGTACAAGGACTCTTTTCT ACCAGCATTGAAGGGAAATATGCCATGGTTGGAGGGTGAGGAAGTGGTCG TGCAGCAGGACGGAGCGACCCCGCACACGGGCAACGACACGCCGCGGAAG CTTAACGAAATCGGGAGGGACGGGGGGTGGAAAGTTAATCTCGTAACTCA GCCTGCGCAGTCACCAGATTTCAACATCAACGATTTGGGGTTCTTCGCAT CTCTGAAAAGTAGGGTTTGGAGGGAGCGTTACGGTTCGATAGACTGCCTT GTGGAGAGGGTAAAGACCATGTACGATGCATGCGACGCGGCAACCTTAGA GGCGGTGGCAGAGCCTCTTCAAGCGGTACAATCAGGTCTTGAAAGCGCTA GGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig609:5429..5836-

>mRNA_H-paniculata_contig609.13789.1 ID=mRNA_H-paniculata_contig609.13789.1|Name=mRNA_H-paniculata_contig609.13789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig609:5429..5836- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTACCAGGAGTGGTACAAGGACTCTTTTCTACCAGCATTGAAGGG
AAATATGCCATGGTTGGAGGGTGAGGAAGTGGTCGTGCAGCAGGACGGAG
CGACCCCGCACACGGGCAACGACACGCCGCGGAAGCTTAACGAAATCGGG
AGGGACGGGGGGTGGAAAGTTAATCTCGTAACTCAGCCTGCGCAGTCACC
AGATTTCAACATCAACGATTTGGGGTTCTTCGCATCTCTGAAAAGTAGGG
TTTGGAGGGAGCGTTACGGTTCGATAGACTGCCTTGTGGAGAGGGTAAAG
ACCATGTACGATGCATGCGACGCGGCAACCTTAGAGGCGGTGGCAGAGCC
TCTTCAAGCGGTACAATCAGGTCTTGAAAGCGCTAGGGGGTAAATGTGGT
ACCAGGAGTGGTACAAGGACTCTTTTCTACCAGCATTGAAGGGAAATATG
CCATGGTTGGAGGGTGAGGAAGTGGTCGTGCAGCAGGACGGAGCGACCCC
GCACACGGGCAACGACACGCCGCGGAAGCTTAACGAAATCGGGAGGGACG
GGGGGTGGAAAGTTAATCTCGTAACTCAGCCTGCGCAGTCACCAGATTTC
AACATCAACGATTTGGGGTTCTTCGCATCTCTGAAAAGTAGGGTTTGGAG
GGAGCGTTACGGTTCGATAGACTGCCTTGTGGAGAGGGTAAAGACCATGT
ACGATGCATGCGACGCGGCAACCTTAGAGGCGGTGGCAGAGCCTCTTCAA
GCGGTACAATCAGGTCTTGAAAGCGCTAGGGGGTAA
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