mRNA_H-paniculata_contig60878.13783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A8D8KT35_CULPI (Copia protein n=6 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KT35_CULPI) HSP 1 Score: 77.8 bits (190), Expect = 1.560e-13 Identity = 55/169 (32.54%), Postives = 74/169 (43.79%), Query Frame = 1
Query: 1 KNVAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQ--KFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVL 501
K + VC+ C EPGH K+NCP+ K G G + + + SD G WV DSGA+AHMT +T+ANG I G G V D GE Q K S+S V VP L T+L S+ + + +V K+G +I V+
Sbjct: 206 KRRKKPAVCYNCGEPGHFKVNCPELAEDQRKSAGGGNAKAKAA---QSDARCVAFTTGVERNARWVIDSGASAHMTNDRSFFTSLSEFDGGGITLANGTKTAICGVGSGEVVGID-GEAQPVKISISEVKFVPGLTTSLISVGKLAEKDFSVVFDKKGCSIVSAGSKVV 370
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: H3H5K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K9_PHYRM) HSP 1 Score: 74.7 bits (182), Expect = 1.680e-12 Identity = 54/176 (30.68%), Postives = 84/176 (47.73%), Query Frame = 1
Query: 1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
+N E R CF+CN+PGH+K +CP R ++ G D V T R W+ DSGATAHMTP + +YE + + + VT+A+G+ L + G G + + D+ I+ V H+P LD L S+ + + L V ++ I + L +K+G
Sbjct: 214 RNTGEFRGKCFKCNQPGHMKRDCPVR---------------------NTGGDDDAVFAVGTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTIKMVD---VLHIPGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNTSAIALGKKVG 365
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A6A3I090_9STRA (CCHC-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I090_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.120e-12 Identity = 53/176 (30.11%), Postives = 83/176 (47.16%), Query Frame = 1
Query: 1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
KN + R CF+CN+PGH+K +CP+R ++ G D V T R W+ DSGATAHMTP + +YE + + + VT+A+G+ + G G L+ D+ I+ V H+ LD L S+ + + L V ++ I + L +K+G
Sbjct: 214 KNAGDFRGKCFKCNQPGHMKRDCPER---------------------NAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRIKMVD---VLHISGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNASAIALGKKVG 365
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A6G0QKW0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QKW0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.120e-12 Identity = 53/176 (30.11%), Postives = 83/176 (47.16%), Query Frame = 1
Query: 1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
KN + R CF+CN+PGH+K +CP+R ++ G D V T R W+ DSGATAHMTP + +YE + + + VT+A+G+ + G G L+ D+ I+ V H+ LD L S+ + + L V ++ I + L +K+G
Sbjct: 214 KNAGDFRGKCFKCNQPGHMKRDCPER---------------------NAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRIKMVD---VLHISGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNASAIALGKKVG 365
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.920e-12 Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 4 NVAETRV-----CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAI 477
N++ R+ CF C++ GH+K R CP KG G E A+F++ G + W+ DSGATAHMTP E +FDY+ + +++ VT+A+G+ + + G G + + D I+ V H+P LD L S+ + + L V ++ I
Sbjct: 110 NISRKRIGFEGKCFNCDKFGHMK-----RECPDFKGPGKNEED----AVFAA---------GESRSSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCII 252
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A1W7R602_AEDAL (Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R602_AEDAL) HSP 1 Score: 72.4 bits (176), Expect = 9.340e-12 Identity = 55/173 (31.79%), Postives = 76/173 (43.93%), Query Frame = 1
Query: 13 ETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHR--------LSAMFSSDG-FRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICSNLFVTVANGETLPIDGYGKMLVWMKD-RGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVL 501
++RVCF C +PGHLK NC Q + C + + S + A SDG +V +G A W DSGAT HMT + E V +A+GE + G G+ + D GE + L V VP L + L S+ + + V G I PNG V+
Sbjct: 219 DSRVCFYCKQPGHLKRNCRQFL-KECNKVENSTQSKKEDKSKAKASQAQSVSDGPLAWMVGYGEPAD--WYVDSGATRHMTGNRRFFSKLEEAKFASVILADGEKSEVRGVGEGRFHVIDGNGEAVEVMLHDVLFVPGLTSGLISVSALSKKGFGVVFNGSGCEIRRPNGEVV 388
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A6A3GEB1_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEB1_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.420e-11 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 1
Query: 1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLD 402
KN + R CF+CN+PGH+K +CP+R ++ G D V T R W+ DSGATAHMTP + +YE + + + VT+A+G+ L + G G + + D+ I+ V H+P LD
Sbjct: 107 KNAGDFRGKCFKCNQPGHMKRDCPER---------------------NAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKLTVVGRGTVRLLGLDQNRIKMVD---VLHIPGLD 219
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A4Y2NNV2_ARAVE (CCHC-type domain-containing protein n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NNV2_ARAVE) HSP 1 Score: 70.9 bits (172), Expect = 2.890e-11 Identity = 48/135 (35.56%), Postives = 65/135 (48.15%), Query Frame = 1
Query: 19 RVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDY-EICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSL 420
R C+ C +PGH+ +C ++ S D F IVE G T +E W+ADSGA+AHMT + D+ E S V V N + G G + V MK G+ LS V +VPD+ NLFS+
Sbjct: 183 RKCYVCRKPGHIAKDCWKKD---------------RKQKTSGDAFVCIVE-GVTEKEQWIADSGASAHMTSYRKYFLDFKEFLSPKPVYVGNNNAIMTYGQGTVNVDMKVNGKWVSNHLSEVWYVPDVSRNLFSV 301
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.910e-11 Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 1
Query: 1 KNVAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
KN A C+ C++ GH+K +CP S+ A+F+ V G +A W+ DSGATAHMTP +F+YE + N+ VT+A+G+ + + G G + + D I+ + V H+P LD L S+ + + ++V ++ I + + +K+G
Sbjct: 219 KNNAFKGKCYNCDQIGHMKRDCPS-----------SNVSNDEEAVFA-------VGKGRSAG--WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRIK---MVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVG 369
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 5.390e-11 Identity = 45/172 (26.16%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 7 VAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICS-NLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
V CF C + GH+K +CP ++ G + +S + S++ W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G G + + D I+ + V ++P LD L S+ + + ++V ++ I + V +K+G
Sbjct: 202 VGSKGKCFNCGQAGHMKRDCPVKV----NGDSNDDSVFAIGEDRSAE---------------WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIG 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60878.13783.1 >prot_H-paniculata_contig60878.13783.1 ID=prot_H-paniculata_contig60878.13783.1|Name=mRNA_H-paniculata_contig60878.13783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp KNVAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGback to top mRNA from alignment at H-paniculata_contig60878:127..723- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60878.13783.1 ID=mRNA_H-paniculata_contig60878.13783.1|Name=mRNA_H-paniculata_contig60878.13783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig60878:127..723- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60878:127..723- >mRNA_H-paniculata_contig60878.13783.1 ID=mRNA_H-paniculata_contig60878.13783.1|Name=mRNA_H-paniculata_contig60878.13783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig60878:127..723- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |