mRNA_H-paniculata_contig60878.13783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60878.13783.1
Unique NamemRNA_H-paniculata_contig60878.13783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A8D8KT35_CULPI (Copia protein n=6 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KT35_CULPI)

HSP 1 Score: 77.8 bits (190), Expect = 1.560e-13
Identity = 55/169 (32.54%), Postives = 74/169 (43.79%), Query Frame = 1
Query:    1 KNVAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQ--KFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVL 501
            K   +  VC+ C EPGH K+NCP+      K  G G +  + +    SD        G      WV DSGA+AHMT                +T+ANG    I G G   V   D GE Q  K S+S V  VP L T+L S+  +  +  +V   K+G +I      V+
Sbjct:  206 KRRKKPAVCYNCGEPGHFKVNCPELAEDQRKSAGGGNAKAKAA---QSDARCVAFTTGVERNARWVIDSGASAHMTNDRSFFTSLSEFDGGGITLANGTKTAICGVGSGEVVGID-GEAQPVKISISEVKFVPGLTTSLISVGKLAEKDFSVVFDKKGCSIVSAGSKVV 370          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: H3H5K9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5K9_PHYRM)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-12
Identity = 54/176 (30.68%), Postives = 84/176 (47.73%), Query Frame = 1
Query:    1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
            +N  E R  CF+CN+PGH+K +CP R                     ++ G  D V    T R   W+ DSGATAHMTP    + +YE + + + VT+A+G+ L + G G + +   D+  I+      V H+P LD  L S+  +  + L V  ++    I      + L +K+G
Sbjct:  214 RNTGEFRGKCFKCNQPGHMKRDCPVR---------------------NTGGDDDAVFAVGTERFNGWLIDSGATAHMTPHRSDLVEYEALDAGMEVTIADGKKLAVAGRGTVRLLGLDQKTIKMVD---VLHIPGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNTSAIALGKKVG 365          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A6A3I090_9STRA (CCHC-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I090_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.120e-12
Identity = 53/176 (30.11%), Postives = 83/176 (47.16%), Query Frame = 1
Query:    1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
            KN  + R  CF+CN+PGH+K +CP+R                     ++ G  D V    T R   W+ DSGATAHMTP    + +YE + + + VT+A+G+   + G G  L+   D+  I+      V H+  LD  L S+  +  + L V  ++    I      + L +K+G
Sbjct:  214 KNAGDFRGKCFKCNQPGHMKRDCPER---------------------NAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRIKMVD---VLHISGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNASAIALGKKVG 365          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A6G0QKW0_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QKW0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.120e-12
Identity = 53/176 (30.11%), Postives = 83/176 (47.16%), Query Frame = 1
Query:    1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
            KN  + R  CF+CN+PGH+K +CP+R                     ++ G  D V    T R   W+ DSGATAHMTP    + +YE + + + VT+A+G+   + G G  L+   D+  I+      V H+  LD  L S+  +  + L V  ++    I      + L +K+G
Sbjct:  214 KNAGDFRGKCFKCNQPGHMKRDCPER---------------------NAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKFTVAGRGTALLLGLDQNRIKMVD---VLHISGLDRRLLSVGKLAERGLNVEFQRSSCVIWGNASAIALGKKVG 365          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.920e-12
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 1
Query:    4 NVAETRV-----CFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAI 477
            N++  R+     CF C++ GH+K     R CP  KG G  E      A+F++         G +    W+ DSGATAHMTP  E +FDY+ + +++ VT+A+G+ + + G G + +   D   I+      V H+P LD  L S+  +  + L V  ++    I
Sbjct:  110 NISRKRIGFEGKCFNCDKFGHMK-----RECPDFKGPGKNEED----AVFAA---------GESRSSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCII 252          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A1W7R602_AEDAL (Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R602_AEDAL)

HSP 1 Score: 72.4 bits (176), Expect = 9.340e-12
Identity = 55/173 (31.79%), Postives = 76/173 (43.93%), Query Frame = 1
Query:   13 ETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHR--------LSAMFSSDG-FRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICSNLFVTVANGETLPIDGYGKMLVWMKD-RGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVL 501
            ++RVCF C +PGHLK NC Q +   C  + +   S +          A   SDG    +V +G  A   W  DSGAT HMT +       E      V +A+GE   + G G+    + D  GE  +  L  V  VP L + L S+  +  +   V     G  I  PNG V+
Sbjct:  219 DSRVCFYCKQPGHLKRNCRQFL-KECNKVENSTQSKKEDKSKAKASQAQSVSDGPLAWMVGYGEPAD--WYVDSGATRHMTGNRRFFSKLEEAKFASVILADGEKSEVRGVGEGRFHVIDGNGEAVEVMLHDVLFVPGLTSGLISVSALSKKGFGVVFNGSGCEIRRPNGEVV 388          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A6A3GEB1_9STRA (CCHC-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GEB1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.420e-11
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 KNVAETR-VCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAR-EFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLD 402
            KN  + R  CF+CN+PGH+K +CP+R                     ++ G  D V    T R   W+ DSGATAHMTP    + +YE + + + VT+A+G+ L + G G + +   D+  I+      V H+P LD
Sbjct:  107 KNAGDFRGKCFKCNQPGHMKRDCPER---------------------NAGGDDDAVFAVGTERLNGWLIDSGATAHMTPHRSDLLEYEALDTTMEVTIADGKKLTVVGRGTVRLLGLDQNRIKMVD---VLHIPGLD 219          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A4Y2NNV2_ARAVE (CCHC-type domain-containing protein n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NNV2_ARAVE)

HSP 1 Score: 70.9 bits (172), Expect = 2.890e-11
Identity = 48/135 (35.56%), Postives = 65/135 (48.15%), Query Frame = 1
Query:   19 RVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDY-EICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSL 420
            R C+ C +PGH+  +C ++                     S D F  IVE G T +E W+ADSGA+AHMT   +   D+ E  S   V V N   +   G G + V MK  G+     LS V +VPD+  NLFS+
Sbjct:  183 RKCYVCRKPGHIAKDCWKKD---------------RKQKTSGDAFVCIVE-GVTEKEQWIADSGASAHMTSYRKYFLDFKEFLSPKPVYVGNNNAIMTYGQGTVNVDMKVNGKWVSNHLSEVWYVPDVSRNLFSV 301          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.910e-11
Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 1
Query:    1 KNVAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYE-ICSNLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
            KN A    C+ C++ GH+K +CP               S+   A+F+       V  G +A   W+ DSGATAHMTP    +F+YE +  N+ VT+A+G+ + + G G + +   D   I+   +  V H+P LD  L S+  +  + ++V  ++    I   +  +   +K+G
Sbjct:  219 KNNAFKGKCYNCDQIGHMKRDCPS-----------SNVSNDEEAVFA-------VGKGRSAG--WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRIK---MVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVG 369          
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.390e-11
Identity = 45/172 (26.16%), Postives = 83/172 (48.26%), Query Frame = 1
Query:    7 VAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDGFRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICS-NLFVTVANGETLPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTVCLKKEGAAIALPNGNVLLCRKLG 519
            V     CF C + GH+K +CP ++     G  + +S   +    S++               W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I+   +  V ++P LD  L S+  +  + ++V  ++    I   +  V   +K+G
Sbjct:  202 VGSKGKCFNCGQAGHMKRDCPVKV----NGDSNDDSVFAIGEDRSAE---------------WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIG 351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60878.13783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D8KT35_CULPI1.560e-1332.54Copia protein n=6 Tax=Culex pipiens TaxID=7175 Rep... [more]
H3H5K9_PHYRM1.680e-1230.68Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3I090_9STRA3.120e-1230.11CCHC-type domain-containing protein n=8 Tax=Phytop... [more]
A0A6G0QKW0_9STRA3.120e-1230.11CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A3M6VPY8_9STRA7.920e-1231.10CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A1W7R602_AEDAL9.340e-1231.79Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes alb... [more]
A0A6A3GEB1_9STRA2.420e-1133.58CCHC-type domain-containing protein n=2 Tax=Phytop... [more]
A0A4Y2NNV2_ARAVE2.890e-1135.56CCHC-type domain-containing protein n=2 Tax=Araneu... [more]
A0A329SN38_9STRA4.910e-1128.74Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A225UGS0_9STRA5.390e-1126.16Integrase, catalytic core protein (Fragment) n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60878contigH-paniculata_contig60878:127..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.9526527-CDS-H-paniculata_contig60878:126..4591622930680.9526527-CDS-H-paniculata_contig60878:126..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60878 127..459 -
1691481403.6403348-CDS-H-paniculata_contig60878:126..4591691481403.6403348-CDS-H-paniculata_contig60878:126..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60878 127..459 -
1622930680.9665167-CDS-H-paniculata_contig60878:537..7231622930680.9665167-CDS-H-paniculata_contig60878:537..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60878 538..723 -
1691481403.6516335-CDS-H-paniculata_contig60878:537..7231691481403.6516335-CDS-H-paniculata_contig60878:537..723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60878 538..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60878.13783.1prot_H-paniculata_contig60878.13783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60878 127..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60878.13783.1

>prot_H-paniculata_contig60878.13783.1 ID=prot_H-paniculata_contig60878.13783.1|Name=mRNA_H-paniculata_contig60878.13783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
KNVAETRVCFQCNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFSSDG
FRDIVEHGFTAREFWVADSGATAHMTPSNELMFDYEICSNLFVTVANGET
LPIDGYGKMLVWMKDRGEIQKFSLSRVAHVPDLDTNLFSLQIVVNQRLTV
CLKKEGAAIALPNGNVLLCRKLG
back to top

mRNA from alignment at H-paniculata_contig60878:127..723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60878.13783.1 ID=mRNA_H-paniculata_contig60878.13783.1|Name=mRNA_H-paniculata_contig60878.13783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig60878:127..723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATGTCGCTGAAACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCA TCTGAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAAGGGATCG GTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGG TTCAGGGACATTGTTGAACACGGTTTTACTGCCAGAGTGGCAGGGCAGGG CGAGTTTGCTTCGATAATTGAACTTATTGAAGAGGACAAGCCAGTACCAG AAAATGATTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCAT ATGACTCCGTCTAACGAATTAATGTTTGATTACGAAATCTGCAGTAATTT GTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGATGGATATGGTA AGATGTTGGTATGGATGAAGGATCGGGGCGAGATACAGAAATTCAGCTTG AGTCGTGTAGCGCATGTTCCGGACCTGGACACAAATTTGTTTTCCCTACA GATTGTAGTGAACCAGAGACTTACTGTGTGTTTGAAGAAGGAGGGTGCAG CAATTGCACTACCTAATGGGAACGTTCTTTTGTGCAGAAAACTCGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig60878:127..723-

>mRNA_H-paniculata_contig60878.13783.1 ID=mRNA_H-paniculata_contig60878.13783.1|Name=mRNA_H-paniculata_contig60878.13783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig60878:127..723- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATGTCGCTGAAACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCA
TCTGAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAAGGGATCG
GTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGG
TTCAGGGACATTGTTGAACACGGTTTTACTGCCAGAAAAAATGTCGCTGA
AACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAATT
GTCCTCAGCGCATATGTCCGATCTGCAAAGGGATCGGTCATGGCGAGAGC
AGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGGACATTGT
TGAACACGGTTTTACTGCCAGAGAGTTTTGGGTGGCCGACAGTGGGGCTA
CGGCCCATATGACTCCGTCTAACGAATTAATGTTTGATTACGAAATCTGC
AGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGATGG
ATATGGTAAGATGTTGGTATGGATGAAGGATCGGGGCGAGATACAGAAAT
TCAGCTTGAGTCGTGTAGCGCATGTTCCGGACCTGGACACAAATTTGTTT
TCCCTACAGATTGTAGTGAACCAGAGACTTACTGTGTGTTTGAAGAAGGA
GGGTGCAGCAATTGCACTACCTAATGGGAACGTTCTTTTGTGCAGAAAAC
TCGGAGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCATATGACTCCG
TCTAACGAATTAATGTTTGATTACGAAATCTGCAGTAATTTGTTTGTGAC
GGTGGCTAACGGCGAAACACTTCCGATTGATGGATATGGTAAGATGTTGG
TATGGATGAAGGATCGGGGCGAGATACAGAAATTCAGCTTGAGTCGTGTA
GCGCATGTTCCGGACCTGGACACAAATTTGTTTTCCCTACAGATTGTAGT
GAACCAGAGACTTACTGTGTGTTTGAAGAAGGAGGGTGCAGCAATTGCAC
TACCTAATGGGAACGTTCTTTTGTGCAGAAAACTCGGA
back to top