mRNA_H-paniculata_contig60835.13774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60835.13774.1
Unique NamemRNA_H-paniculata_contig60835.13774.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438EAR5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EAR5_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-9
Identity = 40/149 (26.85%), Postives = 77/149 (51.68%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECREKRRE-KPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
            I+C+NC K GH Q+EC  K  E K    +  G      + +   +SK  + W +DSGC+ +H+  +++LF    +   + +       + V+G+G++   +    G V++I  +VFY+P   D++LSV ++  +G+       + + Y+
Sbjct:  301 IECYNCHKIGHFQYECPNKETETKTQYAEASGEILLMAHADGKEASKDEL-WFLDSGCS-NHMCGKKELFSRLDESFSTSVKLGDNSSMAVKGKGNIRTFV---NGIVQLI-TEVFYVPGLQDNLLSVGQLQEKGLAILIQHGKCKIYH 443          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A5J5C6G7_9ASTE (CCHC-type domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C6G7_9ASTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.940e-9
Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEHA---GYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
            ++C+NC K GH QWEC  K +E         T E      YV+ + ++K  + W +D GC+ +H+  +++ F  F    R  +       + V G+G+V   +    G V+II  +VFY+PE  +++LS+ ++  + +   F + + + ++
Sbjct:   94 VECFNCHKLGHFQWECPSKEKEANYAE----TQEEMLLMAYVDMNKANKEDM-WFLDLGCS-NHMCGKKEYFSDFDGSFRDSVKLGNNSSMVVTGKGNVRLQV---NGIVQII-TEVFYMPELKNNLLSIGQLQEKRLTILFQNGKCKVFH 234          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438CMV7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CMV7_VITVI)

HSP 1 Score: 60.5 bits (145), Expect = 8.750e-8
Identity = 38/149 (25.50%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECREKRRE-KPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
            I+C++C K GH Q+EC  K  E K    +  G      + +   +SK  + W +DSGC+ +H+  +++LF    +   + +       + V G+G++   +    G V++I  +VFY+P   +++LSV ++  +G+       + + Y+
Sbjct:  247 IECYDCHKLGHFQYECPNKETETKAQYAEASGEILLMAHADGKEASKEEL-WFLDSGCS-NHMCGKKELFSRLDESFSTSVKLGDNSSMAVTGKGNIRMFV---NGIVQLI-TEVFYVPGLQNNLLSVGQLQEKGLAILIQHGKCKIYH 389          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 58.5 bits (140), Expect = 4.300e-7
Identity = 39/158 (24.68%), Postives = 71/158 (44.94%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECRE---KRREKPLGGKRHGTGEHA---GYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQG----DVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
            ++C+NC K GH QWEC++      E  +        EH     YVE     K+ + W +DS C+ +H+  +++ F    +     +       + V G+G    DV G+I    G         FY+PE  +++L + ++  +G+   F   + + Y+
Sbjct:  224 VECYNCHKLGHFQWECKQGVTNFAESQV----ESAEEHMLLMAYVETKEQQKTDV-WFLDSRCS-NHMCGKKEYFSELDETFSDSVKLGNNSNMVVNGKGNIRLDVNGVISIISGG--------FYVPELKNNLLGLGQLQEKGLSILFQQGKCKIYH 367          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A7J7D4S1_TRIWF (CCHC-type domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D4S1_TRIWF)

HSP 1 Score: 57.0 bits (136), Expect = 1.380e-6
Identity = 45/167 (26.95%), Postives = 76/167 (45.51%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEH--------AGYVEEHNSSKSRIHWIIDSGCNGDHLTPQR----DLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRI-------IFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
            ++C+NC K GH Q+EC       P  GK     E            VE H + +  I W +DSGC+ +H++  +    DL + FRQ V+                GD   L+   +G+VR+       +  +VFY+PE  +++LS+ ++  +G+       + R Y+
Sbjct:  253 VECYNCHKLGHFQYEC-------PSWGKEANFAELDEKEEVLLMAQVELHGAKREDI-WFLDSGCS-NHMSGDKAWFTDLNESFRQKVKL---------------GDNSRLLAMGKGSVRLQVNELVHVVTEVFYVPELKNNLLSIGQLQEKGLAILIQHGKCRIYH 395          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A6P4Q8C9_GOSAR (uncharacterized protein LOC108488177 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q8C9_GOSAR)

HSP 1 Score: 55.8 bits (133), Expect = 2.690e-6
Identity = 33/131 (25.19%), Postives = 59/131 (45.04%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECRE----KRREKPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSV 381
            +QC+NC K+GH  +ECR     + R      K     E + ++    S KSR +      C  +H+  Q+DLF    + +   +    +    V+G+G +     T +   +    DV+Y+P    +I+S+
Sbjct:  173 VQCYNCNKYGHYNYECRSNPKMEERNHVAATKEEENVESSVFLTYKESEKSRKNIWYLVNCASNHMCGQKDLFSKLDENIHGQVTFGDESHATVKGKGKIT---ITQKNGEKKFISDVYYVPALKSNIISL 300          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A2P6U5G8_CHLSO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform A n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5G8_CHLSO)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5
Identity = 41/156 (26.28%), Postives = 69/156 (44.23%), Query Frame = 1
Query:    7 CWNCGKHGHGQWECREKRREKPLGGK-----RHGTGEHAGYVEEHNS---SKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNG 450
            C+ CGK GH   ECR+K+ +    G       +  G  A   ++  +   S + + W++D+G +  HLT    +    R +      T G G     G+    G ++ A         +V YIPEA++S++SV      G++  F ++R     NG
Sbjct:  247 CFYCGKPGHFADECRQKQLDMARQGNSTQPLHNQFGTIALMAQDQAAAPKSATSMRWVLDTGASR-HLTGDASILSNMRPMDEDLTITFGNGGT---GKATATGDVYLATTDAVFQLTEVLYIPEATESLISVRHATKHGLDFTFSADRCDISRNG 398          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 1
Query:  115 VEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYF 417
            V  H +S     W+IDSGC  +H+TP+   F+   Q  +S +       ++V+G+G V     T    ++ I  DV ++PE S S+LSV +M+ +    +F
Sbjct:  279 VTSHATSSCTETWLIDSGCT-NHMTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVVSVETPTC---IKYIL-DVLFVPEISQSLLSVGQMLEKNYSLHF 374          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY)

HSP 1 Score: 52.0 bits (123), Expect = 7.130e-5
Identity = 43/158 (27.22%), Postives = 71/158 (44.94%), Query Frame = 1
Query:    1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGT-GEHAGYVEEHNSSKSRIH---WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVR-IIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNGVTI 459
            ++C+ C + GH +  C + +R K    K     G  A   E    + + +H   WI+DSG    H+T  R  F    +  +S I     G + V+G+G  + +   ++  VR  I  +V Y P    ++LSV R+V  G+   F  + R    +G  I
Sbjct:  221 MKCFFCKRSGHMKSSCEKYQRWKDKKKKEDTIKGNIANDREVMFITTNSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKKFREIKADGQQI 377          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A1S3E5A3_CICAR (uncharacterized protein LOC105851896 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S3E5A3_CICAR)

HSP 1 Score: 51.6 bits (122), Expect = 9.550e-5
Identity = 26/97 (26.80%), Postives = 51/97 (52.58%), Query Frame = 1
Query:  151 WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFY 441
            W +D+GC+ +H+T  +D F    + V+  I       +  EG G++  LI   +     I CDVFY+P   + +LS+E+++ +G      + +++ +
Sbjct:  294 WYLDTGCS-NHMTEHKDWFISIDEKVKREIKFVDNNTVTTEGVGNI--LIQRKDDKKSFI-CDVFYVPNMKNKLLSLEQLLDKGYSMSMENGQKKMF 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A438EAR5_VITVI1.730e-926.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A5J5C6G7_9ASTE1.940e-927.15CCHC-type domain-containing protein n=1 Tax=Nyssa ... [more]
A0A438CMV7_VITVI8.750e-825.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T9B6_CAJCA4.300e-724.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A7J7D4S1_TRIWF1.380e-626.95CCHC-type domain-containing protein n=1 Tax=Tripte... [more]
A0A6P4Q8C9_GOSAR2.690e-625.19uncharacterized protein LOC108488177 n=1 Tax=Gossy... [more]
A0A2P6U5G8_CHLSO3.220e-526.28Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438GVH9_VITVI3.220e-531.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N4AX79_PHOPY7.130e-527.22CCHC-type domain-containing protein n=1 Tax=Photin... [more]
A0A1S3E5A3_CICAR9.550e-526.80uncharacterized protein LOC105851896 n=1 Tax=Cicer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60835contigH-paniculata_contig60835:116..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue5.1e-09
Seed eggNOG ortholog67593.Physo136303
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.1527104-CDS-H-paniculata_contig60835:115..4451622930680.1527104-CDS-H-paniculata_contig60835:115..445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60835 116..445 -
1691481403.2801282-CDS-H-paniculata_contig60835:115..4451691481403.2801282-CDS-H-paniculata_contig60835:115..445Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60835 116..445 -
1622930680.1911197-CDS-H-paniculata_contig60835:529..6581622930680.1911197-CDS-H-paniculata_contig60835:529..658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60835 530..658 -
1691481403.291419-CDS-H-paniculata_contig60835:529..6581691481403.291419-CDS-H-paniculata_contig60835:529..658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60835 530..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60835.13774.1prot_H-paniculata_contig60835.13774.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60835 116..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60835.13774.1

>prot_H-paniculata_contig60835.13774.1 ID=prot_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEHAGYVEEHNSSKSRIH
WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLI
WTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNG
VTI
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mRNA from alignment at H-paniculata_contig60835:116..658-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60835.13774.1 ID=mRNA_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig60835:116..658- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCAATGCTGGAATTGCGGCAAGCATGGACATGGGCAGTGGGAGTGCCG TGAGAAGCGCAGGGAGAAACCACTCGGCGGCAAACGACACGGCACAGGTG AACACGCGGGCTACGTAGAAGAGCATAATGTAGCGTTGCACCCAGTACTA CAACCTCACTTTATACCCCGATGGTTGCTTGATCCGGTTGCCTGTGCGCC GCGATGGATGGAGTCATCTAAATCACGCATACACTGGATAATTGATTCGG GCTGCAACGGTGATCACCTGACCCCGCAACGCGACCTCTTCCAAATTTTT CGCCAGGTCGTACGTAGTCCCATTGCCACAGCGGGCAAGGGGGAATTGAA TGTAGAGGGGCAAGGAGACGTGGAGGGTTTGATTTGGACTGCGGAGGGAG CCGTGCGCATCATCTTCTGCGATGTATTTTATATACCTGAAGCATCAGAC AGTATTTTATCAGTGGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTT TGGTTCGGAACGGAGACGGTTTTATTACAATGGGGTAACGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig60835:116..658-

>mRNA_H-paniculata_contig60835.13774.1 ID=mRNA_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig60835:116..658- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCAATGCTGGAATTGCGGCAAGCATGGACATGGGCAGTGGGAGTGCCG
TGAGAAGCGCAGGGAGAAACCACTCGGCGGCAAACGACACGGCACAGGTG
AACACGCGGGCTACGTAGAAGAGCATAATATCCAATGCTGGAATTGCGGC
AAGCATGGACATGGGCAGTGGGAGTGCCGTGAGAAGCGCAGGGAGAAACC
ACTCGGCGGCAAACGACACGGCACAGGTGAACACGCGGGCTACGTAGAAG
AGCATAATTCATCTAAATCACGCATACACTGGATAATTGATTCGGGCTGC
AACGGTGATCACCTGACCCCGCAACGCGACCTCTTCCAAATTTTTCGCCA
GGTCGTACGTAGTCCCATTGCCACAGCGGGCAAGGGGGAATTGAATGTAG
AGGGGCAAGGAGACGTGGAGGGTTTGATTTGGACTGCGGAGGGAGCCGTG
CGCATCATCTTCTGCGATGTATTTTATATACCTGAAGCATCAGACAGTAT
TTTATCAGTGGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTT
CGGAACGGAGACGGTTTTATTACAATGGGGTAACGATTTCATCTAAATCA
CGCATACACTGGATAATTGATTCGGGCTGCAACGGTGATCACCTGACCCC
GCAACGCGACCTCTTCCAAATTTTTCGCCAGGTCGTACGTAGTCCCATTG
CCACAGCGGGCAAGGGGGAATTGAATGTAGAGGGGCAAGGAGACGTGGAG
GGTTTGATTTGGACTGCGGAGGGAGCCGTGCGCATCATCTTCTGCGATGT
ATTTTATATACCTGAAGCATCAGACAGTATTTTATCAGTGGAGCGGATGG
TGAGCCAAGGGATGGAGGCGTATTTTGGTTCGGAACGGAGACGGTTTTAT
TACAATGGGGTAACGATT
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