mRNA_H-paniculata_contig60835.13774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438EAR5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EAR5_VITVI) HSP 1 Score: 65.5 bits (158), Expect = 1.730e-9 Identity = 40/149 (26.85%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECREKRRE-KPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
I+C+NC K GH Q+EC K E K + G + + +SK + W +DSGC+ +H+ +++LF + + + + V+G+G++ + G V++I +VFY+P D++LSV ++ +G+ + + Y+
Sbjct: 301 IECYNCHKIGHFQYECPNKETETKTQYAEASGEILLMAHADGKEASKDEL-WFLDSGCS-NHMCGKKELFSRLDESFSTSVKLGDNSSMAVKGKGNIRTFV---NGIVQLI-TEVFYVPGLQDNLLSVGQLQEKGLAILIQHGKCKIYH 443
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A5J5C6G7_9ASTE (CCHC-type domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C6G7_9ASTE) HSP 1 Score: 64.7 bits (156), Expect = 1.940e-9 Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEHA---GYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
++C+NC K GH QWEC K +E T E YV+ + ++K + W +D GC+ +H+ +++ F F R + + V G+G+V + G V+II +VFY+PE +++LS+ ++ + + F + + + ++
Sbjct: 94 VECFNCHKLGHFQWECPSKEKEANYAE----TQEEMLLMAYVDMNKANKEDM-WFLDLGCS-NHMCGKKEYFSDFDGSFRDSVKLGNNSSMVVTGKGNVRLQV---NGIVQII-TEVFYMPELKNNLLSIGQLQEKRLTILFQNGKCKVFH 234
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438CMV7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CMV7_VITVI) HSP 1 Score: 60.5 bits (145), Expect = 8.750e-8 Identity = 38/149 (25.50%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECREKRRE-KPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
I+C++C K GH Q+EC K E K + G + + +SK + W +DSGC+ +H+ +++LF + + + + V G+G++ + G V++I +VFY+P +++LSV ++ +G+ + + Y+
Sbjct: 247 IECYDCHKLGHFQYECPNKETETKAQYAEASGEILLMAHADGKEASKEEL-WFLDSGCS-NHMCGKKELFSRLDESFSTSVKLGDNSSMAVTGKGNIRMFV---NGIVQLI-TEVFYVPGLQNNLLSVGQLQEKGLAILIQHGKCKIYH 389
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA) HSP 1 Score: 58.5 bits (140), Expect = 4.300e-7 Identity = 39/158 (24.68%), Postives = 71/158 (44.94%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECRE---KRREKPLGGKRHGTGEHA---GYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQG----DVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
++C+NC K GH QWEC++ E + EH YVE K+ + W +DS C+ +H+ +++ F + + + V G+G DV G+I G FY+PE +++L + ++ +G+ F + + Y+
Sbjct: 224 VECYNCHKLGHFQWECKQGVTNFAESQV----ESAEEHMLLMAYVETKEQQKTDV-WFLDSRCS-NHMCGKKEYFSELDETFSDSVKLGNNSNMVVNGKGNIRLDVNGVISIISGG--------FYVPELKNNLLGLGQLQEKGLSILFQQGKCKIYH 367
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A7J7D4S1_TRIWF (CCHC-type domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D4S1_TRIWF) HSP 1 Score: 57.0 bits (136), Expect = 1.380e-6 Identity = 45/167 (26.95%), Postives = 76/167 (45.51%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEH--------AGYVEEHNSSKSRIHWIIDSGCNGDHLTPQR----DLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRI-------IFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 444
++C+NC K GH Q+EC P GK E VE H + + I W +DSGC+ +H++ + DL + FRQ V+ GD L+ +G+VR+ + +VFY+PE +++LS+ ++ +G+ + R Y+
Sbjct: 253 VECYNCHKLGHFQYEC-------PSWGKEANFAELDEKEEVLLMAQVELHGAKREDI-WFLDSGCS-NHMSGDKAWFTDLNESFRQKVKL---------------GDNSRLLAMGKGSVRLQVNELVHVVTEVFYVPELKNNLLSIGQLQEKGLAILIQHGKCRIYH 395
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A6P4Q8C9_GOSAR (uncharacterized protein LOC108488177 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q8C9_GOSAR) HSP 1 Score: 55.8 bits (133), Expect = 2.690e-6 Identity = 33/131 (25.19%), Postives = 59/131 (45.04%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECRE----KRREKPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSV 381
+QC+NC K+GH +ECR + R K E + ++ S KSR + C +H+ Q+DLF + + + + V+G+G + T + + DV+Y+P +I+S+
Sbjct: 173 VQCYNCNKYGHYNYECRSNPKMEERNHVAATKEEENVESSVFLTYKESEKSRKNIWYLVNCASNHMCGQKDLFSKLDENIHGQVTFGDESHATVKGKGKIT---ITQKNGEKKFISDVYYVPALKSNIISL 300
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A2P6U5G8_CHLSO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform A n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5G8_CHLSO) HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5 Identity = 41/156 (26.28%), Postives = 69/156 (44.23%), Query Frame = 1
Query: 7 CWNCGKHGHGQWECREKRREKPLGGK-----RHGTGEHAGYVEEHNS---SKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNG 450
C+ CGK GH ECR+K+ + G + G A ++ + S + + W++D+G + HLT + R + T G G G+ G ++ A +V YIPEA++S++SV G++ F ++R NG
Sbjct: 247 CFYCGKPGHFADECRQKQLDMARQGNSTQPLHNQFGTIALMAQDQAAAPKSATSMRWVLDTGASR-HLTGDASILSNMRPMDEDLTITFGNGGT---GKATATGDVYLATTDAVFQLTEVLYIPEATESLISVRHATKHGLDFTFSADRCDISRNG 398
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI) HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5 Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 1
Query: 115 VEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYF 417
V H +S W+IDSGC +H+TP+ F+ Q +S + ++V+G+G V T ++ I DV ++PE S S+LSV +M+ + +F
Sbjct: 279 VTSHATSSCTETWLIDSGCT-NHMTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVVSVETPTC---IKYIL-DVLFVPEISQSLLSVGQMLEKNYSLHF 374
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY) HSP 1 Score: 52.0 bits (123), Expect = 7.130e-5 Identity = 43/158 (27.22%), Postives = 71/158 (44.94%), Query Frame = 1
Query: 1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGT-GEHAGYVEEHNSSKSRIH---WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVR-IIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNGVTI 459
++C+ C + GH + C + +R K K G A E + + +H WI+DSG H+T R F + +S I G + V+G+G + + ++ VR I +V Y P ++LSV R+V G+ F + R +G I
Sbjct: 221 MKCFFCKRSGHMKSSCEKYQRWKDKKKKEDTIKGNIANDREVMFITTNSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKKFREIKADGQQI 377
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A1S3E5A3_CICAR (uncharacterized protein LOC105851896 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S3E5A3_CICAR) HSP 1 Score: 51.6 bits (122), Expect = 9.550e-5 Identity = 26/97 (26.80%), Postives = 51/97 (52.58%), Query Frame = 1
Query: 151 WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFY 441
W +D+GC+ +H+T +D F + V+ I + EG G++ LI + I CDVFY+P + +LS+E+++ +G + +++ +
Sbjct: 294 WYLDTGCS-NHMTEHKDWFISIDEKVKREIKFVDNNTVTTEGVGNI--LIQRKDDKKSFI-CDVFYVPNMKNKLLSLEQLLDKGYSMSMENGQKKMF 386 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60835.13774.1 >prot_H-paniculata_contig60835.13774.1 ID=prot_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEHAGYVEEHNSSKSRIHback to top mRNA from alignment at H-paniculata_contig60835:116..658- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60835.13774.1 ID=mRNA_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig60835:116..658- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60835:116..658- >mRNA_H-paniculata_contig60835.13774.1 ID=mRNA_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig60835:116..658- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |