mRNA_H-paniculata_contig60661.13747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE) HSP 1 Score: 53.9 bits (128), Expect = 3.010e-6 Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 1 INNGNTWVADSGASNHMTNN---LAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTD-VPATL-EVSYLPELNFNLFSLHKIQGK-YSVISD 282
N+ TW+ADSGAS HM+N Y KP + +G+GS++ GK+ +I D +P L +V Y+P++ FNLFS+ K Y++++D
Sbjct: 285 FNDDETWIADSGASEHMSNQKEWFENYYEFDKPTE----IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSIGAALDKCYTMMTD 380
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 52.8 bits (125), Expect = 5.270e-6 Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 13 NTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI--QGKYSVISDAAG 291
N W+ADSGASNH+T N++ + P G + + +GDG+ + + G I H++ L V + P++ NL S+HK S+I D G
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHKFVSDNHCSLIFDEIG 114
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU) HSP 1 Score: 52.4 bits (124), Expect = 1.060e-5 Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 1
Query: 13 NTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI--QGKYSVISDAAG 291
N W+ADSGASNH+T+N++ + P G + + +GDG+ + + I H++ L V ++P++ NL S+HK S+I D G
Sbjct: 116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVHKFVSDNHCSLIFDEIG 207
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5K0Y1U5_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y1U5_9MAGN) HSP 1 Score: 51.6 bits (122), Expect = 2.020e-5 Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 19 WVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
W+ADSGAS+HMT + K N + G D V++G+G + + G+ +L+ H + +P + +V Y+P+L NL S+ +I
Sbjct: 350 WLADSGASSHMTGDAGKISN-KSIYHGSDRVIIGNGKSLPITHTGQGNLVVHGSY-IPLS-KVLYVPQLKKNLLSVSQI 425
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 2.650e-5 Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 13 NTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPAT--LEVSYLPELNFNLFSLHKI 255
N WV DSGAS+H NN + NL +P G VV +G M ++ G + L ++ + + VSY+P L +NLFSL ++
Sbjct: 295 NEWVIDSGASDHFCNNSSWFTNL-EPSTG--VVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRV 374
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A2N9F6H8_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F6H8_FAGSY) HSP 1 Score: 50.8 bits (120), Expect = 3.790e-5 Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 1
Query: 7 NGNTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
N TW+ D+GAS+H+T N A N P G D V +G+G + + +G L H+ V ++P + NL S+HK+
Sbjct: 345 NSETWLTDTGASDHITAN-ASNLNTPTPYQGSDQVTIGNGQSLPIQSIGNAQL--HTPYHQFQLRNVLHIPRIASNLLSMHKL 424
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A8K0G3N9_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3N9_9COLE) HSP 1 Score: 50.4 bits (119), Expect = 4.850e-5 Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 1 INNGNTWVADSGASNHMTNN---LAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLI-FHSTTDVPA-TLEVSYLPELNFNLFSLHKIQGK-YSVISD 282
N+ TW+ADSGAS H +N Y KP + +G+GS+ GK+ LI F +P + +V Y+P++ FNLFS+ K Y++++D
Sbjct: 207 FNDDETWIADSGASEHTSNQKEWFENYYEFDKPTE----IKIGNGSVKNAHGKGKISLIAFEGQDYIPTESNDVLYVPDIKFNLFSIGAALDKGYTMMTD 302
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A8K0CH72_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CH72_9COLE) HSP 1 Score: 50.4 bits (119), Expect = 4.960e-5 Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 1 INNGNTWVADSGASNHMTNN---LAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTD-VPATL-EVSYLPELNFNLFSLHKIQGK-YSVISD 282
N+ TW+ADSGAS H++N Y KP + +G+GS++ GK+ LI D +P L +V Y+ ++ FNLFS+ K Y++++D
Sbjct: 237 FNDDETWIADSGASEHISNQKKWFENYYEFDKPTE----IKIGNGSVINAHGKGKISLIAFDGQDYIPTKLNDVVYVQDIKFNLFSIGAALDKGYTMMTD 332
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 50.1 bits (118), Expect = 4.980e-5 Identity = 26/78 (33.33%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 19 WVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
W ADSGA+NH+TN+L+ +++P G + V + +GS + + +G +LI +S T ++ ++P+++ NL S+ K
Sbjct: 64 WFADSGATNHLTNDLSN-LQVKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5N5F2G3_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F2G3_9ROSA) HSP 1 Score: 50.4 bits (119), Expect = 5.140e-5 Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 19 WVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
W+ADSGASNHMT +L + +L P ++V +G + V +G +I ST + V Y+P+L NL S+HK+
Sbjct: 316 WLADSGASNHMTADL-QNLSLASPYPTTELVQTANGEGLTVSHIGS-SVIKPSTYPIKLN-SVLYVPQLTHNLLSVHKL 391 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60661.13747.1 >prot_H-paniculata_contig60661.13747.1 ID=prot_H-paniculata_contig60661.13747.1|Name=mRNA_H-paniculata_contig60661.13747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp INNGNTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVback to top mRNA from alignment at H-paniculata_contig60661:11..304- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60661.13747.1 ID=mRNA_H-paniculata_contig60661.13747.1|Name=mRNA_H-paniculata_contig60661.13747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig60661:11..304- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60661:11..304- >mRNA_H-paniculata_contig60661.13747.1 ID=mRNA_H-paniculata_contig60661.13747.1|Name=mRNA_H-paniculata_contig60661.13747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig60661:11..304- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |