mRNA_H-paniculata_contig60661.13747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60661.13747.1
Unique NamemRNA_H-paniculata_contig60661.13747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE)

HSP 1 Score: 53.9 bits (128), Expect = 3.010e-6
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 INNGNTWVADSGASNHMTNN---LAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTD-VPATL-EVSYLPELNFNLFSLHKIQGK-YSVISD 282
             N+  TW+ADSGAS HM+N        Y   KP      + +G+GS++     GK+ +I     D +P  L +V Y+P++ FNLFS+     K Y++++D
Sbjct:  285 FNDDETWIADSGASEHMSNQKEWFENYYEFDKPTE----IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSIGAALDKCYTMMTD 380          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 5.270e-6
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 1
Query:   13 NTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI--QGKYSVISDAAG 291
            N W+ADSGASNH+T N++   +   P  G + + +GDG+ + +   G    I H++      L V + P++  NL S+HK       S+I D  G
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHKFVSDNHCSLIFDEIG 114          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU)

HSP 1 Score: 52.4 bits (124), Expect = 1.060e-5
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 1
Query:   13 NTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI--QGKYSVISDAAG 291
            N W+ADSGASNH+T+N++   +   P  G + + +GDG+ + +        I H++      L V ++P++  NL S+HK       S+I D  G
Sbjct:  116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVHKFVSDNHCSLIFDEIG 207          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5K0Y1U5_9MAGN (Integrase catalytic domain-containing protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0Y1U5_9MAGN)

HSP 1 Score: 51.6 bits (122), Expect = 2.020e-5
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   19 WVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
            W+ADSGAS+HMT +  K  N +    G D V++G+G  + +   G+ +L+ H +  +P + +V Y+P+L  NL S+ +I
Sbjct:  350 WLADSGASSHMTGDAGKISN-KSIYHGSDRVIIGNGKSLPITHTGQGNLVVHGSY-IPLS-KVLYVPQLKKNLLSVSQI 425          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.650e-5
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   13 NTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPAT--LEVSYLPELNFNLFSLHKI 255
            N WV DSGAS+H  NN +   NL +P  G  VV   +G  M ++  G + L  ++ + +       VSY+P L +NLFSL ++
Sbjct:  295 NEWVIDSGASDHFCNNSSWFTNL-EPSTG--VVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRV 374          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A2N9F6H8_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F6H8_FAGSY)

HSP 1 Score: 50.8 bits (120), Expect = 3.790e-5
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    7 NGNTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
            N  TW+ D+GAS+H+T N A   N   P  G D V +G+G  + +  +G   L  H+         V ++P +  NL S+HK+
Sbjct:  345 NSETWLTDTGASDHITAN-ASNLNTPTPYQGSDQVTIGNGQSLPIQSIGNAQL--HTPYHQFQLRNVLHIPRIASNLLSMHKL 424          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A8K0G3N9_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3N9_9COLE)

HSP 1 Score: 50.4 bits (119), Expect = 4.850e-5
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:    1 INNGNTWVADSGASNHMTNN---LAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLI-FHSTTDVPA-TLEVSYLPELNFNLFSLHKIQGK-YSVISD 282
             N+  TW+ADSGAS H +N        Y   KP      + +G+GS+      GK+ LI F     +P  + +V Y+P++ FNLFS+     K Y++++D
Sbjct:  207 FNDDETWIADSGASEHTSNQKEWFENYYEFDKPTE----IKIGNGSVKNAHGKGKISLIAFEGQDYIPTESNDVLYVPDIKFNLFSIGAALDKGYTMMTD 302          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A8K0CH72_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CH72_9COLE)

HSP 1 Score: 50.4 bits (119), Expect = 4.960e-5
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 INNGNTWVADSGASNHMTNN---LAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTD-VPATL-EVSYLPELNFNLFSLHKIQGK-YSVISD 282
             N+  TW+ADSGAS H++N        Y   KP      + +G+GS++     GK+ LI     D +P  L +V Y+ ++ FNLFS+     K Y++++D
Sbjct:  237 FNDDETWIADSGASEHISNQKKWFENYYEFDKPTE----IKIGNGSVINAHGKGKISLIAFDGQDYIPTKLNDVVYVQDIKFNLFSIGAALDKGYTMMTD 332          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 50.1 bits (118), Expect = 4.980e-5
Identity = 26/78 (33.33%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   19 WVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHK 252
            W ADSGA+NH+TN+L+    +++P  G + V + +GS + +  +G  +LI +S T      ++ ++P+++ NL S+ K
Sbjct:   64 WFADSGATNHLTNDLSN-LQVKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138          
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Match: A0A5N5F2G3_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F2G3_9ROSA)

HSP 1 Score: 50.4 bits (119), Expect = 5.140e-5
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   19 WVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKI 255
            W+ADSGASNHMT +L +  +L  P    ++V   +G  + V  +G   +I  ST  +     V Y+P+L  NL S+HK+
Sbjct:  316 WLADSGASNHMTADL-QNLSLASPYPTTELVQTANGEGLTVSHIGS-SVIKPSTYPIKLN-SVLYVPQLTHNLLSVHKL 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60661.13747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A8K0DN47_9COLE3.010e-635.00Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A5E4GCQ9_PRUDU5.270e-633.68PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]
A0A5E4G702_PRUDU1.060e-532.63PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A5K0Y1U5_9MAGN2.020e-536.71Integrase catalytic domain-containing protein (Fra... [more]
A0A6G0X3B5_9STRA2.650e-537.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F6H8_FAGSY3.790e-533.73Integrase catalytic domain-containing protein n=4 ... [more]
A0A8K0G3N9_9COLE4.850e-534.00Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A8K0CH72_9COLE4.960e-534.00Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A834W4R7_9FABA4.980e-533.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5F2G3_9ROSA5.140e-537.97Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60661contigH-paniculata_contig60661:11..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930676.5902495-CDS-H-paniculata_contig60661:10..3041622930676.5902495-CDS-H-paniculata_contig60661:10..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60661 11..304 -
1691481401.7919872-CDS-H-paniculata_contig60661:10..3041691481401.7919872-CDS-H-paniculata_contig60661:10..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60661 11..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60661.13747.1prot_H-paniculata_contig60661.13747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60661 11..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60661.13747.1

>prot_H-paniculata_contig60661.13747.1 ID=prot_H-paniculata_contig60661.13747.1|Name=mRNA_H-paniculata_contig60661.13747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
INNGNTWVADSGASNHMTNNLAKTYNLRKPMAGEDVVMLGDGSIMVVDFV
GKLDLIFHSTTDVPATLEVSYLPELNFNLFSLHKIQGKYSVISDAAGS
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mRNA from alignment at H-paniculata_contig60661:11..304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60661.13747.1 ID=mRNA_H-paniculata_contig60661.13747.1|Name=mRNA_H-paniculata_contig60661.13747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig60661:11..304- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAACAATGGCAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACAT GACGAACAATCTTGCAAAAACGTATAACCTTCGCAAGCCGATGGCAGGGG AAGATGTGGTAATGTTGGGGGATGGATCGATTATGGTGGTAGATTTTGTG GGAAAGTTGGATTTGATTTTTCACTCCACTACTGACGTGCCTGCCACACT TGAAGTATCGTACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACA AAATCCAAGGGAAATATTCAGTAATTTCGGATGCAGCAGGCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig60661:11..304-

>mRNA_H-paniculata_contig60661.13747.1 ID=mRNA_H-paniculata_contig60661.13747.1|Name=mRNA_H-paniculata_contig60661.13747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig60661:11..304- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAACAATGGCAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACAT
GACGAACAATCTTGCAAAAACGTATAACCTTCGCAAGCCGATGGCAGGGG
AAGATGTGGTAATGTTGGGGGATGGATCGATTATGGTGGTAGATTTTGTG
GGAAAGTTGGATTTGATTTTTCACTCCACTACTGACGTGCCTGCCACACT
TGAAGTATCGTACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACA
AAATCCAAGGGAAATATTCAGTAATTTCGGATGCAGCAGGCTCGATTAAC
AATGGCAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACATGACGAA
CAATCTTGCAAAAACGTATAACCTTCGCAAGCCGATGGCAGGGGAAGATG
TGGTAATGTTGGGGGATGGATCGATTATGGTGGTAGATTTTGTGGGAAAG
TTGGATTTGATTTTTCACTCCACTACTGACGTGCCTGCCACACTTGAAGT
ATCGTACTTACCGGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATCC
AAGGGAAATATTCAGTAATTTCGGATGCAGCAGGCTCG
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