mRNA_H-paniculata_contig60462.13725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60462.13725.1
Unique NamemRNA_H-paniculata_contig60462.13725.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.590e-21
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVSG 357
            +++YGLKQ+GR W     +  V N G  Q ++DPCVFR     V+ MI+ + VDD +VA     C+ L A+L+ +F T   GE +W+  CAI RD+  G ++I+Q T++D ++ RFDV  
Sbjct:  308 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQS 426          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JEP3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.570e-18
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G + +CD     L      +  GEL+WY GC   RD V G V I+Q+   + V+ +FDV+
Sbjct:  654 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLNSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVNISQQAVAEKVVAKFDVT 771          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.720e-18
Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFD----------------------------VSGHIDVRYHFSRELIARKVLRVDYKKGEDQPADILTKPL 468
            +++YGLKQ+GR W     +  + N G  Q  +DPCVFR      +  ++ + VDD ++     +   + A+L+ +F     GE  WY G  I  D+  G+ +++Q  ++ ++I  F+                             S HIDVRYHF REL     +  +Y   E+Q AD+LTK L
Sbjct:  544 RALYGLKQSGREWGFEAADALIAN-GYEQCRADPCVFRRMVGAEVVGLIVIYVDDILLVASEQERQEVLASLQKKFPVKDLGECTWYDGIGIEMDLENGIAKLSQTAYIGSIIKWFNRLTSGAKIKVLEDNKGALALVQNPFSSATSKHIDVRYHFIRELFKSGKITAEYVPTEEQYADMLTKVL 727          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.520e-17
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G   +CD     L      +  GEL+WY GC   RD V G V I+Q+   + ++ +FDV+
Sbjct:  198 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFDVT 315          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5J769_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J769_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.650e-17
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G   +CD     L      +  GEL+WY GC   RD V G V I+Q+   + ++ +F V+
Sbjct:   33 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEEIVAKFGVT 150          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.290e-17
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G   +CD     L      +  GEL+WY GC  +RD V G V I+Q+   + ++ +F V+
Sbjct:  716 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFFRDTVLGTVTISQQAVAEKIVAKFGVT 833          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.060e-16
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAAL-RAEFQTTRGELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++      +D CV RL + GV+ M++ ++VDD    G   +CD     L R E  +  GEL+WY GC   RD V G+V I+Q    + ++ +F V+
Sbjct:  648 RSLYGLKQASRTWHHHLMR-GMKSLRFESCAADACVMRLIESGVVTMVVVIHVDDIFAIGLKSRCDQFGVDLNRYEPISNLGELRWYAGCRFSRDTVLGMVTISQHAVAENIVAKFGVT 765          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-16
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G   +CD     L      +  GEL+WY GC   RD V G V I+Q+   + ++ +F V+
Sbjct:  211 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVT 328          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.410e-16
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G   +CD     L      +  GEL+WY GC   RD V G V I+Q+   + ++ +F V+
Sbjct:  448 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVELNRYMPISNLGELRWYAGCHFPRDTVLGTVTISQQAVAEKIVAKFGVT 565          
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.420e-16
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
            +S+YGLKQA RTW   L+   + ++G     +D CV RL + GV+ M++ ++VDD    G   +CD     L      +  GEL+WY GC   RD V G V I+Q+   + ++ +F V+
Sbjct:  435 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVT 552          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLS1_9PHAE3.590e-2140.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEP3_9PHAE6.570e-1837.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LQZ7_9PHAE8.720e-1829.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5L3_9PHAE1.520e-1736.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J769_9PHAE2.650e-1736.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP2_9PHAE4.290e-1736.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K793_9PHAE1.060e-1636.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE1.340e-1636.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0K7_9PHAE1.410e-1636.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE1.420e-1636.13Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60462contigH-paniculata_contig60462:12..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.7
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog37682.EMT19664
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein kinase domain
EggNOG OGs37Y8N@33090,3GZJX@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size468
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60462.13725.1prot_H-paniculata_contig60462.13725.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60462 18..539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.6983626-UTR-H-paniculata_contig60462:11..171622930673.6983626-UTR-H-paniculata_contig60462:11..17Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60462 12..17 +
1691481400.5054133-UTR-H-paniculata_contig60462:11..171691481400.5054133-UTR-H-paniculata_contig60462:11..17Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60462 12..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.722128-CDS-H-paniculata_contig60462:17..3681622930673.722128-CDS-H-paniculata_contig60462:17..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60462 18..368 +
1691481400.5172043-CDS-H-paniculata_contig60462:17..3681691481400.5172043-CDS-H-paniculata_contig60462:17..368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60462 18..368 +
1622930673.7442946-CDS-H-paniculata_contig60462:428..5391622930673.7442946-CDS-H-paniculata_contig60462:428..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60462 429..539 +
1691481400.5272563-CDS-H-paniculata_contig60462:428..5391691481400.5272563-CDS-H-paniculata_contig60462:428..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60462 429..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60462.13725.1

>prot_H-paniculata_contig60462.13725.1 ID=prot_H-paniculata_contig60462.13725.1|Name=mRNA_H-paniculata_contig60462.13725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVN
VDDAIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAIWRDIVRGVVRI
TQRTFVDTVIIRFDVSGHIDVRYHFSRELIARKVLRVDYKKGEDQPADIL
TKPL
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mRNA from alignment at H-paniculata_contig60462:12..539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60462.13725.1 ID=mRNA_H-paniculata_contig60462.13725.1|Name=mRNA_H-paniculata_contig60462.13725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig60462:12..539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTCTATGTATGGGCTCAAGCAGGCAGGACGGACATGGTCAGAGCGCCT TGTAGAAATACCCGTAAACAACGTCGGCATGACGCAATCCGAGTCTGATC CTTGTGTGTTTAGGCTGGAGAAACGTGGGGTGTTAGATATGATTCTGTGT GTTAATGTAGATGATGCAATTGTTGCTGGTAAAAGTGTGAAGTGTGATTC CCTGTTTGCGGCGTTGAGGGCAGAGTTCCAAACCACGAGAGGCGAGCTCA AGTGGTACCTGGGTTGTGCAATTTGGCGTGACATAGTGAGGGGAGTTGTC CGCATCACGCAACGGACATTCGTTGATACTGTCATTATACGTTTTGACGT GTCAGGCGTGGCAGTAAGGGAGGGAGTGTAGTGAGCGCTACCAGCACGAC ACAACACTGTGTGAAAGCACATAGACGTAAGGTATCATTTCAGTCGAGAG TTGATTGCTAGGAAAGTTTTAAGGGTAGACTACAAGAAGGGTGAGGACCA ACCGGCTGACATCCTGACTAAACCGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig60462:12..539+

>mRNA_H-paniculata_contig60462.13725.1 ID=mRNA_H-paniculata_contig60462.13725.1|Name=mRNA_H-paniculata_contig60462.13725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig60462:12..539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGACATGGTCAGAGCGCCTTGTAGA
AATACCCGTAAACAACGTCGGCATGACGCAATCCGAGTCTGATCCTTGTG
TGTTTAGGCTGGAGAAACGTGGGGTGTTAGATATGATTCTGTGTGTTAAT
GTAGATGATGCAATTGTTGCTGGTAAAAGTGTGAAGTGTGATTCCCTGTT
TGCGGCGTTGAGGGCAGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGGT
ACCTGGGTTGTGCAATTTGGCGTGACATAGTGAGGGGAGTTGTCCGCATC
ACGCAACGGACATTCGTTGATACTGTCATTATACGTTTTGACGTGTCAGG
CATGTATGGGCTCAAGCAGGCAGGACGGACATGGTCAGAGCGCCTTGTAG
AAATACCCGTAAACAACGTCGGCATGACGCAATCCGAGTCTGATCCTTGT
GTGTTTAGGCTGGAGAAACGTGGGGTGTTAGATATGATTCTGTGTGTTAA
TGTAGATGATGCAATTGTTGCTGGTAAAAGTGTGAAGTGTGATTCCCTGT
TTGCGGCGTTGAGGGCAGAGTTCCAAACCACGAGAGGCGAGCTCAAGTGG
TACCTGGGTTGTGCAATTTGGCGTGACATAGTGAGGGGAGTTGTCCGCAT
CACGCAACGGACATTCGTTGATACTGTCATTATACGTTTTGACGTGTCAG
GCCACATAGACGTAAGGTATCATTTCAGTCGAGAGTTGATTGCTAGGAAA
GTTTTAAGGGTAGACTACAAGAAGGGTGAGGACCAACCGGCTGACATCCT
GACTAAACCGCTCCACATAGACGTAAGGTATCATTTCAGTCGAGAGTTGA
TTGCTAGGAAAGTTTTAAGGGTAGACTACAAGAAGGGTGAGGACCAACCG
GCTGACATCCTGACTAAACCGCTC
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