mRNA_H-paniculata_contig60462.13725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 3.590e-21 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVSG 357
+++YGLKQ+GR W + V N G Q ++DPCVFR V+ MI+ + VDD +VA C+ L A+L+ +F T GE +W+ CAI RD+ G ++I+Q T++D ++ RFDV
Sbjct: 308 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQS 426
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JEP3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP3_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 6.570e-18 Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G + +CD L + GEL+WY GC RD V G V I+Q+ + V+ +FDV+
Sbjct: 654 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLNSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVNISQQAVAEKVVAKFDVT 771
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 8.720e-18 Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFD----------------------------VSGHIDVRYHFSRELIARKVLRVDYKKGEDQPADILTKPL 468
+++YGLKQ+GR W + + N G Q +DPCVFR + ++ + VDD ++ + + A+L+ +F GE WY G I D+ G+ +++Q ++ ++I F+ S HIDVRYHF REL + +Y E+Q AD+LTK L
Sbjct: 544 RALYGLKQSGREWGFEAADALIAN-GYEQCRADPCVFRRMVGAEVVGLIVIYVDDILLVASEQERQEVLASLQKKFPVKDLGECTWYDGIGIEMDLENGIAKLSQTAYIGSIIKWFNRLTSGAKIKVLEDNKGALALVQNPFSSATSKHIDVRYHFIRELFKSGKITAEYVPTEEQYADMLTKVL 727
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.520e-17 Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G +CD L + GEL+WY GC RD V G V I+Q+ + ++ +FDV+
Sbjct: 198 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFDVT 315
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5J769_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J769_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 2.650e-17 Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G +CD L + GEL+WY GC RD V G V I+Q+ + ++ +F V+
Sbjct: 33 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEEIVAKFGVT 150
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 4.290e-17 Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G +CD L + GEL+WY GC +RD V G V I+Q+ + ++ +F V+
Sbjct: 716 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFFRDTVLGTVTISQQAVAEKIVAKFGVT 833
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.060e-16 Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAAL-RAEFQTTRGELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++ +D CV RL + GV+ M++ ++VDD G +CD L R E + GEL+WY GC RD V G+V I+Q + ++ +F V+
Sbjct: 648 RSLYGLKQASRTWHHHLMR-GMKSLRFESCAADACVMRLIESGVVTMVVVIHVDDIFAIGLKSRCDQFGVDLNRYEPISNLGELRWYAGCRFSRDTVLGMVTISQHAVAENIVAKFGVT 765
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.340e-16 Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G +CD L + GEL+WY GC RD V G V I+Q+ + ++ +F V+
Sbjct: 211 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVT 328
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.410e-16 Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G +CD L + GEL+WY GC RD V G V I+Q+ + ++ +F V+
Sbjct: 448 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVELNRYMPISNLGELRWYAGCHFPRDTVLGTVTISQQAVAEKIVAKFGVT 565
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.420e-16 Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 KSMYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNVDDAIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAIWRDIVRGVVRITQRTFVDTVIIRFDVS 354
+S+YGLKQA RTW L+ + ++G +D CV RL + GV+ M++ ++VDD G +CD L + GEL+WY GC RD V G V I+Q+ + ++ +F V+
Sbjct: 435 RSLYGLKQASRTWHHHLMR-GMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTVLGTVTISQQAVAEKIVAKFGVT 552 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60462.13725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60462.13725.1 >prot_H-paniculata_contig60462.13725.1 ID=prot_H-paniculata_contig60462.13725.1|Name=mRNA_H-paniculata_contig60462.13725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp MYGLKQAGRTWSERLVEIPVNNVGMTQSESDPCVFRLEKRGVLDMILCVNback to top mRNA from alignment at H-paniculata_contig60462:12..539+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60462.13725.1 ID=mRNA_H-paniculata_contig60462.13725.1|Name=mRNA_H-paniculata_contig60462.13725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig60462:12..539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60462:12..539+ >mRNA_H-paniculata_contig60462.13725.1 ID=mRNA_H-paniculata_contig60462.13725.1|Name=mRNA_H-paniculata_contig60462.13725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig60462:12..539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |