mRNA_H-paniculata_contig60361.13714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 9.930e-19 Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
TW GP R+V+A HVY V++IV G ++VHV R+R YAD+ L D++ VF + QGE ++ +ILNIG + D G Y+V V W G +E +W+
Sbjct: 38 TWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQ 133
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.680e-17 Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
TW GP R+V+A HVY V++IV G ++VHV R+R YAD+ L D++ VF + QGE ++ +ILNIG + D G Y+V V W G +E +W+
Sbjct: 293 TWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQ 388
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.600e-17 Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
TW GP R+V+A HVY V++IV G ++VHV R+R YAD+ L D++ VF + QGE ++ +ILNIG + D G Y+V V W G +E +W+
Sbjct: 1516 TWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQ 1611
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 4.950e-12 Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1
Query: 28 IVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
IV A HVY V++IV G ++VHV R+R YADA+L +++ VF A QGE +++ I+++ + D G + V VEWVG EE++WE
Sbjct: 1602 IVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWE 1690
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 1.920e-7 Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNIL 210
TW GP RIV A HV V++IV G ++VHV R+R YADASL + VF A Q E +++ I+
Sbjct: 2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: W2KEB9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KEB9_PHYPR) HSP 1 Score: 57.4 bits (137), Expect = 1.930e-7 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASL------VEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
TW GP RI+ A AH + +E ++ GAK +VHV R++ YADASL +E Q++ + + + ++++N +Y VLV+W GL E S+E
Sbjct: 613 TWVGPYRILRA-DAHSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLEHISAQVILLSVEKLKSHRWNDMIN---------DYEVLVQWKGLEQIEDSYE 705
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: V9EDH7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9EDH7_PHYPR) HSP 1 Score: 57.4 bits (137), Expect = 1.950e-7 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASL------VEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
TW GP RI+ A AH + +E ++ GAK +VHV R++ YADASL +E Q++ + + + ++++N +Y VLV+W GL E S+E
Sbjct: 841 TWVGPYRILRA-DAHSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLEHISAQVILLSVEKLKSHRWNDMIN---------DYEVLVQWKGLEQIEDSYE 933
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 1.410e-6 Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 79 GAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
G ++VHV R+R YADA+L ++ F A QG +++ I+++ ES D G + V VEWVG +E+ WE
Sbjct: 4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPG-FDVEVEWVGFDKDENIWE 75
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: UPI001E1D2F17 (uncharacterized protein LOC123543780 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2F17) HSP 1 Score: 53.9 bits (128), Expect = 1.460e-6 Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 10 WKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
W+GP R+V+ S H+Y VED++ A +H R+R Y DASL ++ + Q+QG ++ + + + + K ++VLV W G + +WE
Sbjct: 72 WRGPYRVVSTLSEHIYDVEDLLTKAVSSIHSSRLRFYHDASLEVSAELH-EHLSHQNQG-YEVRALQQLAFNAEDKI-FLVLVSWKGFEEADDTWE 164
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A225UQG0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG0_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 1.070e-5 Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1
Query: 7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKK-----GEYVVLVEWVGLGAEEHSWE 297
TW GP +I T H + V +V GA +VH+ R++ YAD SL ++++ AA QG +L++GE D + +Y VL+ W GL E SWE
Sbjct: 447 TWVGPYQI-TRADPHSFQVRHLVTGALTDVHLSRLKFYADISLSITEELRDHVAA---QGI-----VLSVGELKDSRWNEDTDDYEVLIGWKGLEPIEDSWE 539 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60361.13714.1 >prot_H-paniculata_contig60361.13714.1 ID=prot_H-paniculata_contig60361.13714.1|Name=mRNA_H-paniculata_contig60361.13714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp VGTWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDback to top mRNA from alignment at H-paniculata_contig60361:649..945- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60361.13714.1 ID=mRNA_H-paniculata_contig60361.13714.1|Name=mRNA_H-paniculata_contig60361.13714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig60361:649..945- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60361:649..945- >mRNA_H-paniculata_contig60361.13714.1 ID=mRNA_H-paniculata_contig60361.13714.1|Name=mRNA_H-paniculata_contig60361.13714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig60361:649..945- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |