mRNA_H-paniculata_contig60361.13714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60361.13714.1
Unique NamemRNA_H-paniculata_contig60361.13714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.930e-19
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            TW GP R+V+A   HVY V++IV G  ++VHV R+R YAD+ L    D++ VF  +  QGE ++ +ILNIG + D  G Y+V V W G   +E +W+
Sbjct:   38 TWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQ 133          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.680e-17
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            TW GP R+V+A   HVY V++IV G  ++VHV R+R YAD+ L    D++ VF  +  QGE ++ +ILNIG + D  G Y+V V W G   +E +W+
Sbjct:  293 TWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQ 388          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.600e-17
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            TW GP R+V+A   HVY V++IV G  ++VHV R+R YAD+ L    D++ VF  +  QGE ++ +ILNIG + D  G Y+V V W G   +E +W+
Sbjct: 1516 TWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQ 1611          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.950e-12
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   28 IVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            IV A   HVY V++IV G  ++VHV R+R YADA+L    +++ VF  A  QGE +++ I+++  + D  G + V VEWVG   EE++WE
Sbjct: 1602 IVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWE 1690          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.920e-7
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNIL 210
            TW GP RIV A   HV  V++IV G  ++VHV R+R YADASL      + VF  A  Q E +++ I+
Sbjct:    2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: W2KEB9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KEB9_PHYPR)

HSP 1 Score: 57.4 bits (137), Expect = 1.930e-7
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASL------VEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            TW GP RI+ A  AH + +E ++ GAK +VHV R++ YADASL      +E    Q++  + +     + ++++N         +Y VLV+W GL   E S+E
Sbjct:  613 TWVGPYRILRA-DAHSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLEHISAQVILLSVEKLKSHRWNDMIN---------DYEVLVQWKGLEQIEDSYE 705          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: V9EDH7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9EDH7_PHYPR)

HSP 1 Score: 57.4 bits (137), Expect = 1.950e-7
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASL------VEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            TW GP RI+ A  AH + +E ++ GAK +VHV R++ YADASL      +E    Q++  + +     + ++++N         +Y VLV+W GL   E S+E
Sbjct:  841 TWVGPYRILRA-DAHSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLEHISAQVILLSVEKLKSHRWNDMIN---------DYEVLVQWKGLEQIEDSYE 933          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.410e-6
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   79 GAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            G  ++VHV R+R YADA+L    ++   F  A  QG  +++ I+++ ES D  G + V VEWVG   +E+ WE
Sbjct:    4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPG-FDVEVEWVGFDKDENIWE 75          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: UPI001E1D2F17 (uncharacterized protein LOC123543780 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2F17)

HSP 1 Score: 53.9 bits (128), Expect = 1.460e-6
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   10 WKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE 297
            W+GP R+V+  S H+Y VED++  A   +H  R+R Y DASL    ++     + Q+QG  ++  +  +  + + K  ++VLV W G    + +WE
Sbjct:   72 WRGPYRVVSTLSEHIYDVEDLLTKAVSSIHSSRLRFYHDASLEVSAELH-EHLSHQNQG-YEVRALQQLAFNAEDKI-FLVLVSWKGFEEADDTWE 164          
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Match: A0A225UQG0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.070e-5
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1
Query:    7 TWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKDVQIVFAAAQHQGELQISNILNIGESPDKK-----GEYVVLVEWVGLGAEEHSWE 297
            TW GP +I T    H + V  +V GA  +VH+ R++ YAD SL   ++++   AA   QG      +L++GE  D +      +Y VL+ W GL   E SWE
Sbjct:  447 TWVGPYQI-TRADPHSFQVRHLVTGALTDVHLSRLKFYADISLSITEELRDHVAA---QGI-----VLSVGELKDSRWNEDTDDYEVLIGWKGLEPIEDSWE 539          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60361.13714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE9.930e-1944.33Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE2.680e-1744.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE3.600e-1744.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE4.950e-1243.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBX7_9PHAE1.920e-745.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2KEB9_PHYPR1.930e-734.95Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9EDH7_PHYPR1.950e-734.95Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6H5L994_9PHAE1.410e-639.73Chromo domain-containing protein n=2 Tax=Ectocarpu... [more]
UPI001E1D2F171.460e-632.29uncharacterized protein LOC123543780 n=1 Tax=Merce... [more]
A0A225UQG0_9STRA1.070e-536.27Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60361contigH-paniculata_contig60361:649..945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930672.0332925-CDS-H-paniculata_contig60361:648..9451622930672.0332925-CDS-H-paniculata_contig60361:648..945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60361 649..945 -
1691481399.9079616-CDS-H-paniculata_contig60361:648..9451691481399.9079616-CDS-H-paniculata_contig60361:648..945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60361 649..945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60361.13714.1prot_H-paniculata_contig60361.13714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60361 649..945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60361.13714.1

>prot_H-paniculata_contig60361.13714.1 ID=prot_H-paniculata_contig60361.13714.1|Name=mRNA_H-paniculata_contig60361.13714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
VGTWKGPRRIVTAGSAHVYTVEDIVMGAKKEVHVVRMRPYADASLVEGKD
VQIVFAAAQHQGELQISNILNIGESPDKKGEYVVLVEWVGLGAEEHSWE
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mRNA from alignment at H-paniculata_contig60361:649..945-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60361.13714.1 ID=mRNA_H-paniculata_contig60361.13714.1|Name=mRNA_H-paniculata_contig60361.13714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig60361:649..945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGGACGTGGAAGGGCCCGCGGCGGATCGTTACGGCCGGTTCTGCGCA CGTCTACACTGTGGAAGACATCGTGATGGGGGCCAAGAAGGAGGTTCACG TCGTCCGGATGCGGCCGTACGCTGACGCTTCCCTGGTCGAGGGGAAGGAC GTGCAGATCGTGTTCGCTGCGGCGCAACACCAAGGAGAGCTCCAGATCTC CAACATCCTCAACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGTGG TGCTGGTGGAATGGGTGGGACTGGGTGCTGAGGAGCACAGCTGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig60361:649..945-

>mRNA_H-paniculata_contig60361.13714.1 ID=mRNA_H-paniculata_contig60361.13714.1|Name=mRNA_H-paniculata_contig60361.13714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig60361:649..945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGGACGTGGAAGGGCCCGCGGCGGATCGTTACGGCCGGTTCTGCGCA
CGTCTACACTGTGGAAGACATCGTGATGGGGGCCAAGAAGGAGGTTCACG
TCGTCCGGATGCGGCCGTACGCTGACGCTTCCCTGGTCGAGGGGAAGGAC
GTGCAGATCGTGTTCGCTGCGGCGCAACACCAAGGAGAGCTCCAGATCTC
CAACATCCTCAACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGTGG
TGCTGGTGGAATGGGTGGGACTGGGTGCTGAGGAGCACAGCTGGGAGGTC
GGGACGTGGAAGGGCCCGCGGCGGATCGTTACGGCCGGTTCTGCGCACGT
CTACACTGTGGAAGACATCGTGATGGGGGCCAAGAAGGAGGTTCACGTCG
TCCGGATGCGGCCGTACGCTGACGCTTCCCTGGTCGAGGGGAAGGACGTG
CAGATCGTGTTCGCTGCGGCGCAACACCAAGGAGAGCTCCAGATCTCCAA
CATCCTCAACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGTGGTGC
TGGTGGAATGGGTGGGACTGGGTGCTGAGGAGCACAGCTGGGAG
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