mRNA_H-paniculata_contig12155.1369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12155.1369.1
Unique NamemRNA_H-paniculata_contig12155.1369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: D8LF54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF54_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.380e-13
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 3 
Query:  117 SRIRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANMEAEIALLDQG 296
            S+IR EY HVP +T+C+KRAEILR+FL+ GSI+ATD+Y++  E KAR N+ AE+ +L+ G
Sbjct:  155 SQIREEYIHVPADTYCKKRAEILREFLSTGSIFATDEYQRTFEAKARENVAAEVEMLNAG 214
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: A0A1Z5KJ21_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJ21_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 1.470e-9
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  123 IRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANMEAEIALLDQG 296
            IR+EYSHVP ET+C+KRA+IL  FL   +IY T  +R+  E +AR+N+ AEI LL QG
Sbjct:  169 IRKEYSHVPQETYCQKRADILETFLQQQNIYKTSLFREMFEERARSNLAAEIRLLRQG 226
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: A0A1Z5KTL6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KTL6_FISSO)

HSP 1 Score: 63.2 bits (152), Expect = 6.030e-8
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:  123 IRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANMEAEIALLDQG 296
            I++EYSHVP ET+C+KRA+IL  FL   +IY T  +R+  E +AR+N+ AEI  L QG
Sbjct:  171 IQKEYSHVPHETYCQKRADILETFLQQQNIYKTALFREMFEERARSNLAAEIRCLRQG 228
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: A0A1H8FGI2_9ACTN (Predicted metal-dependent phosphohydrolase, HD superfamily n=2 Tax=Nonomuraea pusilla TaxID=46177 RepID=A0A1H8FGI2_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 7.800e-6
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:  123 IRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANMEAEIALLDQ 293
            +R EY+HVP E F R RAE+LR+ L   S+Y T + R+  E +ARAN+ AE+A+L++
Sbjct:  178 VREEYAHVPDEAFRRGRAEVLRRLLNTPSLYRTRRGRELWEERARANLAAELAVLER 234
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: UPI001F117BA6 (metal-dependent phosphohydrolase n=1 Tax=Nonomuraea basaltis TaxID=2495887 RepID=UPI001F117BA6)

HSP 1 Score: 55.8 bits (133), Expect = 2.000e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:  123 IRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANMEAEIALL 287
            IR+EY+HVP E F + RAE+LR+ LA   +Y T + R+  E  ARANM AE+A+L
Sbjct:  178 IRQEYAHVPGELFRKGRAEVLRRLLATPRLYRTARARELWEEPARANMTAELAIL 232
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: A0A843LKM9_9ARCH (N-methyl-D-aspartate receptor NMDAR2C subunit n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A843LKM9_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 2.850e-5
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:  108 DLLSRIRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANM 266
            D   +IR+EYS VP + +C KRA++LR FL    IY TD +R++ E KAR N+
Sbjct:  178 DYDKKIRQEYSWVPWDQYCAKRAQVLRSFLDRPQIYHTDYFRQKYEDKARMNL 230
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BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Match: UPI001FDA1041 (DUF4031 domain-containing protein n=1 Tax=Paeniglutamicibacter kerguelensis TaxID=254788 RepID=UPI001FDA1041)

HSP 1 Score: 54.7 bits (130), Expect = 7.130e-5
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 3 
Query:   90 EGGATGDLLSRIRREYSHVPTETFCRKRAEILRQFLAAGSIYATDQYRKEREPKARANMEAEIALLDQGDLA 305
            E GA       +RREY+HVP   F   RA ILR+ L A S+Y+    R   E +ARAN+ AE+ LL++ + A
Sbjct:  220 EAGAYRRYALAVRREYAHVPEPAFAAGRAAILRKLLEADSLYSRPLARSLWETRARANLAAELDLLERPEPA 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12155.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LF54_ECTSI3.380e-1358.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5KJ21_FISSO1.470e-956.90Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KTL6_FISSO6.030e-853.45Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1H8FGI2_9ACTN7.800e-649.12Predicted metal-dependent phosphohydrolase, HD sup... [more]
UPI001F117BA62.000e-552.73metal-dependent phosphohydrolase n=1 Tax=Nonomurae... [more]
A0A843LKM9_9ARCH2.850e-549.06N-methyl-D-aspartate receptor NMDAR2C subunit n=1 ... [more]
UPI001FDA10417.130e-543.06DUF4031 domain-containing protein n=1 Tax=Paeniglu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12155contigH-paniculata_contig12155:2800..7125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D8LF54
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein conserved in bacteria
EggNOG OGs2RZFA@2759,COG4339@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size973
Cds size345
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12155.1369.1prot_H-paniculata_contig12155.1369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12155 3428..7125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.9328837-UTR-H-paniculata_contig12155:2799..34271622928935.9328837-UTR-H-paniculata_contig12155:2799..3427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12155 2800..3427 -
1691480673.2801013-UTR-H-paniculata_contig12155:2799..34271691480673.2801013-UTR-H-paniculata_contig12155:2799..3427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12155 2800..3427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.9492826-CDS-H-paniculata_contig12155:3427..36501622928935.9492826-CDS-H-paniculata_contig12155:3427..3650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12155 3428..3650 -
1691480673.288878-CDS-H-paniculata_contig12155:3427..36501691480673.288878-CDS-H-paniculata_contig12155:3427..3650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12155 3428..3650 -
1622928935.9774117-CDS-H-paniculata_contig12155:7003..71251622928935.9774117-CDS-H-paniculata_contig12155:7003..7125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12155 7004..7125 -
1691480673.2965496-CDS-H-paniculata_contig12155:7003..71251691480673.2965496-CDS-H-paniculata_contig12155:7003..7125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12155 7004..7125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12155.1369.1

>prot_H-paniculata_contig12155.1369.1 ID=prot_H-paniculata_contig12155.1369.1|Name=mRNA_H-paniculata_contig12155.1369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
SEHGRHYHTLNHLADLLESAERDFDSFRNPRVVRLAIFFHESAENIVTYQ
PRPSAENERKFCVNFLPPAAFMLPTNTGKNENPRRALTWKPRLHYSTRET
WRHSNSWLVRAHDV*
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mRNA from alignment at H-paniculata_contig12155:2800..7125-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12155.1369.1 ID=mRNA_H-paniculata_contig12155.1369.1|Name=mRNA_H-paniculata_contig12155.1369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4326bp|location=Sequence derived from alignment at H-paniculata_contig12155:2800..7125- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGAGCATGGTCGACATTATCACACCCTCAACCATCTGGCGGACTTACT
GGAAAGCGCCGAACGAGACTTCGATAGCTTTCGGAATCCGAGGGTGGTGC
GACTGGCGATCTTCTTTCACGAGTAAGCTGCTATAATGTGCTAAATGCGT
GGCTGTAGTGAACTGCAGCCGTCTTATGTAACTTGAACTGCTTTCGAGTC
ATTGGTGGTATCCTTTAGAAAGGGACAGCACGTCACTTTTTATATGTTCT
TTTCAGCACGTGTACATATCCAAACGTAACTTGTCGATACATCATGTGAG
CAGGTTAGCAAGTGAAACTTTCAATTGGATTGTATCATTCCACTACTACC
GTAATACCCTTTGTTATCGCCCTTCCTCTCGCAATCGCACCGGATGCGAT
AACAAAGGGGAATATGAGCGAGAACACGGGTAGGAGTCTTCCATGAAAAT
CCGTTTCGAGATAGGTTTCTGGCCTGAGCGACGCTGGTCGGCAGTATCTT
GTGTTTTGTGCTGTACTGTCTGTAGTACTGCGGTGAGGTCTAAACGCAGT
GATTGAGGAACTTTTTGTCTAAGTCAGATCCATAGCCATTGAACCCTTGC
CGACCCCCTGCATCCAGCAGAAGTTGTATGCTTTTCCCACGGTGCGCCAT
CACCCCCCCCCCCCCTGCTGCGAAGGAGTTTAATTTCGCTTCGCACCCGG
GGCGATAGCAAAGGGTATTATCGTGTTTTCTTGGATAGTGGCAAAAAGCG
TTAAAACGCTGTGGCACCCAGATCACTTACTGAAATCCCTAGAAAGCGCC
GATCTTCCGATCAAGACCTGCAGTCTGTAGTTGTGCCGGACGGCCAACAT
AGATATAGAGAAACTACACAAAACACGCCGCTGCAGTCAAGGATGACGCC
ATCGTCGACTGCAATTGCTCCACTTTTACAATGTGACGAATGGTCTGAGC
GTAATGCCTCGTCCTATCAAAACACCTCAACATGTGACTAAAGCACCATC
AGTGTCATACAGTTAAAAGATGCCAATGCTGGGTCCGTCGGTATGGTTTA
CAGTTTTTGTATGTAGTTAGTCAGCAACAGACAATTTGTTGTCAAACCAT
TAAGTGTGGGTTTCGTCACGTGTGCGTTATGATCTAATCCATCAGAACAT
AAAGCAAGAGTCGACCTACACATATACAGTGGCCGAAGCACTGACACGAC
TCACACACATCTAAGCCCATCAATAGGCTACTCCCCGTGTAGGGAACTTC
GTTCAACGCACATGATTTCGGCGGTCAAACTTGACCCTAATACCGTACCA
TGAACCGCCGCGAACACGTACTTAGCTGATGTTGAAATCGCTCGCAGATG
CCCATCCATGTTCGAACTTGTTCCAGATTTAAATGAACTGTCCGGGTTAC
GCACAACGCAAGTAACCGGGTAGATGCAAAGCAGAGTTCGTGAAGCCAAC
ACTGAAACAATCACCAACGCGACTTGTAGCAGCACGATTCGTAGCACCAT
CTGTCCGATACACGTGTTGTTGAGGTCCGACTTTTTTTTATCCATTATTG
CGTTTGCATTATAGCTGTTGGGTTCGTAAACTGATTTTTTCAGTAAACCC
TCAAGGCCTGGGTTTTCACGCTGAATGAGTATGACAACTCTACAAATACC
GGAGCTGGTTAGCGCATATGCGCTCATAAATACAAACGTTCAAGGGGGAA
CTCACGCTGGCTGCTCAATTGATGGCCATCGTGTTCTGCGCCTCGTCTTT
GGTCGAGTTCACACCCGTTTTTTTTCGTTGCCCTCGCGCCTCGATGTGAA
AACTACCGCAACCTTTTCATAAATGCAGCATAATTTACGATCCCAAGAGT
GGTACCAACGAGGAAGATAGTGAGACGTTGTTCAAAACATTTGCAGAGGA
GGCAAGGGTAAATCACTCTGAAGCGCGCGCGGTGTCGGCCTACATCATTG
CCACGAAAAAACATGATGTTTCGGGATCGGACGACTCCGACTTGTGCGCG
TTTATCGACCTGGACATGGGGGTGATTGGACGAGAGCGACCTGACTACCT
AACATATGCCTCACAGGTGTGAAAAGGCAACAACATTGCGATGTAGGGTT
GTTATTCAACGCGTTTTTGTTTCTCTTTTTTCGTCCTTTTCTTTGTTCTC
GAAGATTTTCCCTCTTGTTTTCTTCTTGTTACTCATGGAAAGAAAAAAAA
CATGACATCTATTTTCGTTTTCGTGATCATATCTCCTTCCTTTGTTTTCT
CGAGAGTACCGCCGAAACCGGATAGACCAATGACCCGCTCGAGTGCGTTA
TCGAGCAAACTGGCTTCAAGGGACTCTCCAGTTACTGTGGAATGCTCCTA
TGACTGCACCGACTGTACTTCACTACTCAATCATCGTGTACACGCTAGAT
CGTCGCGTACCACGGTTAATACCGTGACTATTTGTACAGTCTATGAAAAA
AAATGGCAGAGCAGATCCCTCCACTGCCTGAGCTGACGCGTACGAGCTTC
GTCAGCAGGGTCCTGGCTTGTGATGCTCCCATTACGGTGCTAATTGCACT
TCGCTGGCTGCTCTTCGTGTCAACTGTCCCCCCAGACAAGTACAAATGAA
GCATTCGCAACTATCTCGAATTATCATTATTTGTCTTGAGTAAGCATGTA
TTAATTTCTTTACAGGTCTATTAATGGCTACACTACAGATAGTCACCAGG
TGACCGTATACCCGGCAAAACAGTCACACAGGTTCTGTTTACTTTCGGGA
TGGTACTGCCAGATAGAATACTCTCATCTGCCCGAGCTTTTCGATGCTCC
ATGATATATCGAGTTCACTGCATATTATTCGCGTCATATGGACATCTTCC
CCAACTCAAACAGATACAGTTATCATTCCAGATTCTCGTATTTATTCATA
CATTGTATTCGCATTTGTCCGGGGGTTGCAATTGTTACCGTTTGCCTATT
TGTATATCTGTACGTGCGGGTAGGAGCCAAATCACTGCACATGACGTTAG
ACATGAGACGGTCATTTTCCTCCTTCTCGACCGAAAAAAGACAAAATAGT
AATGCAACGTCAGCGGCGCTACCTACTTGCAGCACGGGGTGTTTGGCTCT
GCATTTGACTTCGTGGGCCCTCGTATTGTTGTTAACATGACCACATTATG
TCGATGATCATGATCGTTTAAGAGTCACGTATCTGTAAGGCGGAGGTGTA
TGCCGAGGACAGCTTCAGTGCGGCAGGTAGGTACAGAGCGGGTACATCAT
TTGGATCCATAACGATTTTTTCTCCCTGATGCGAACGTATGAATATCCCA
ATGCAACTTGAGATTCAGGCGCGTTTCCGTCTAACCATATGACCCTACAC
TCTTGCCATTACTTTGTCGAACGAAACACTGCAAACTATCAAACGTGTTT
TTTTTTTTTTTTTTTTTAACCCCCGGAAGGCTAAGACAAAACCCTTTCCG
CTCAAACGTGTTGTCACTGTTGCAGATCCGCCGAGAATATAGTCACGTAC
CAACCGAGACCTTCTGCCGAAAACGAGCGGAAATTTTGCGTCAATTTCTT
GCCGCCGGCAGCATTTATGCTACCGACCAATACCGGAAAGAACGAGAACC
CAAGGCGCGCGCTAACATGGAAGCCGAGATTGCATTACTCGACCAGGGAG
ACTTGGCGGCACTCGAACAGCTGGTTGGTGCGGGCCCATGATGTATAAAG
ACGTCGTGATAAATTACCTGACACTTTGGCCGTTCTTCATCAGAGATGGC
AATCTTACACTCATAAGATTTGTTGGGAAGGAGAAATTCGTTGCTCCTCG
CCCTCGTCGTTCTGCATCTTATTCGTGTATGGTCGACACGTGCCAAGGTA
TCCAGGCCTATGGCACTGGAATTGAGTGGCGATAGTAAGGGGGGTGCAGG
GCAGTTGTTGAGAGGGAACTGTGAGGTTGAATCGTCTCCAATATGGGGGA
GGTGGCTGCTGTCGGAGTTTGTGGTCGCCATAGAGTTTTTGGGTTGTTGA
CGCACAAGAAGTATTTCTTGACTTTTTCCCGCCACTGACATCACGTTCGA
GTCAGTATGTCACAAAATATTGGTTATCTTCGCGTGGCAAAACTCCAATA
CATGAAAAAATAGGCGCATGTGATGTCTGTACATTCACGTACCTGTGCTG
ATGAACGCTATTGAGAGCGCTCTGTGTTTTTGGCGGCAACACATGTAAAG
GAAAGATGCAGTAAACATGTTCGGGGCGCAGGGGATAAATCGTCACAGCA
TTTGGGGTGTATTTCCCTTATATTACATGCAACTGTCAAGTTTGTTTTTC
GTCGTCTGGCCTGAGGCGTGTGCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12155:2800..7125-

>mRNA_H-paniculata_contig12155.1369.1 ID=mRNA_H-paniculata_contig12155.1369.1|Name=mRNA_H-paniculata_contig12155.1369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig12155:2800..7125- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGAGCATGGTCGACATTATCACACCCTCAACCATCTGGCGGACTTACT
GGAAAGCGCCGAACGAGACTTCGATAGCTTTCGGAATCCGAGGGTGGTGC
GACTGGCGATCTTCTTTCACGAAGCGAGCATGGTCGACATTATCACACCC
TCAACCATCTGGCGGACTTACTGGAAAGCGCCGAACGAGACTTCGATAGC
TTTCGGAATCCGAGGGTGGTGCGACTGGCGATCTTCTTTCACGAATCCGC
CGAGAATATAGTCACGTACCAACCGAGACCTTCTGCCGAAAACGAGCGGA
AATTTTGCGTCAATTTCTTGCCGCCGGCAGCATTTATGCTACCGACCAAT
ACCGGAAAGAACGAGAACCCAAGGCGCGCGCTAACATGGAAGCCGAGATT
GCATTACTCGACCAGGGAGACTTGGCGGCACTCGAACAGCTGGTTGGTGC
GGGCCCATGATGTATAAATCCGCCGAGAATATAGTCACGTACCAACCGAG
ACCTTCTGCCGAAAACGAGCGGAAATTTTGCGTCAATTTCTTGCCGCCGG
CAGCATTTATGCTACCGACCAATACCGGAAAGAACGAGAACCCAAGGCGC
GCGCTAACATGGAAGCCGAGATTGCATTACTCGACCAGGGAGACTTGGCG
GCACTCGAACAGCTGGTTGGTGCGGGCCCATGATGTATAA
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