mRNA_H-paniculata_contig1215.1364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1215.1364.1
Unique NamemRNA_H-paniculata_contig1215.1364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 6.060e-22
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  201 ARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            AR M +P+ + ++  K + RYL+  PD+GITFG  S G  L+ F DAD AGD++ R+STT Y F  NGGAISW SR Q  V  S+TEAEY+AA    KEG +L
Sbjct:  210 ARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWL 310
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 102 bits (255), Expect = 6.880e-22
Identity = 55/110 (50.00%), Postives = 68/110 (61.82%), Query Frame = 3 
Query:  195 TSARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNG---HGLE--GFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            T ++    P  E ++    +FRYL     L +T+G        HGL   G+ DADWAGD  DR+ST+ YVFKL GGAISWCSRKQ+ +  SSTEAEYVA   A KEG +L
Sbjct:   78 TLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWL 187
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 102 bits (255), Expect = 6.880e-22
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 3 
Query:  177 IQHTQYTSARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            + H   T +R M +P RE ++  K IFRYL    + GI F  +   + + G++DAD+AG+V+DR+STT YVF L+GG I W S  Q +V  S+TEAEY+A  EA KE  +L
Sbjct:   83 LAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 193
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2N9HGZ8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGZ8_FAGSY)

HSP 1 Score: 104 bits (260), Expect = 1.050e-21
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 3 
Query:  177 IQHTQYTSARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            + H   T +R M +P RE ++  K IFRYL    + GI F  +   + + G++DAD+AG+V+DR+STT YVF L+GG I W S  Q +VT S+TEAEY+AA E  KE  +L
Sbjct:  260 LAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVTMSTTEAEYMAAAETAKEALWL 370
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: UPI001262FCA1 (secreted RxLR effector protein 161-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262FCA1)

HSP 1 Score: 99.0 bits (245), Expect = 1.350e-21
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 3 
Query:  201 ARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLE--GFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            +R M +P +E +S  K + RYL    DL + +G  + G  L+  GF+DADW GD++ R+ST+ YVF L G A+ W S++Q  V  SSTEAEY+A   AGKE  +L
Sbjct:   32 SRFMSNPGKEHWSAVKRVLRYLRGTSDLSLCYGGMATGDELDVIGFVDADWGGDLDSRRSTSGYVFSLFGAAVCWMSKRQSTVALSSTEAEYMALTHAGKEAMWL 136
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2P6UYV9_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=3 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV9_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 1.660e-21
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  201 ARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            AR M +P+ + ++  K + RYL+  PD+GITFG  S G  L+ F DAD AGD++ R+STT Y F  NGGAISW SR Q  V  S+TEAEY+AA    KEG +L
Sbjct:  762 ARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWL 862
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BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2P6UYV5_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYV5_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 1.860e-21
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  201 ARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            AR M +P+ + ++  K + RYL+  PD+GITFG  S G  L+ F DAD AGD++ R+STT Y F  NGGAISW SR Q  V  S+TEAEY+AA    KEG +L
Sbjct:  866 ARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWL 966
[Close]
BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2P6UZ08_9CHLO (Gag-Pol poly (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ08_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 1.940e-21
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  201 ARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            AR M +P+ + ++  K + RYL+  PD+GITFG  S G  L+ F DAD AGD++ R+STT Y F  NGGAISW SR Q  V  S+TEAEY+AA    KEG +L
Sbjct: 1028 ARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWL 1128
[Close]
BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2P6V0U2_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0U2_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 2.570e-21
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  201 ARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            AR M +P+ + ++  K + RYL+  PD+GITFG  +   GL+ F DAD AGD++ R+STT Y F  NGGAISW SR Q  V  S+TEAEY++A    KEG +L
Sbjct:  208 ARHMANPTTDHWTAAKTVLRYLTGTPDIGITFG--AGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYISAATTIKEGLWL 308
[Close]
BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 104 bits (260), Expect = 3.020e-21
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 3 
Query:  177 IQHTQYTSARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGDKSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWSSTEAEYVAAGEAGKEGGYL 509
            + H   T +R M +P RE ++  K IFRYL    + GI F  +S  + + G++DAD+AG+V+DR+STT YVF L+GG I W S  Q +V  S+TEAEY+A  EA KE  +L
Sbjct:  778 LAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWL 888
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1215.1364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6UYX8_9CHLO6.060e-2252.43Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A060SU91_PYCCI6.880e-2250.00Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A2N9GS71_FAGSY6.880e-2245.95Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9HGZ8_FAGSY1.050e-2146.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001262FCA11.350e-2145.71secreted RxLR effector protein 161-like n=1 Tax=Pi... [more]
A0A2P6UYV9_9CHLO1.660e-2152.43Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYV5_9CHLO1.860e-2152.43Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6UZ08_9CHLO1.940e-2152.43Gag-Pol poly (Fragment) n=1 Tax=Micractinium condu... [more]
A0A2P6V0U2_9CHLO2.570e-2150.49Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2N9HJ76_FAGSY3.020e-2146.85Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1215contigH-paniculata_contig1215:10162..11098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue8.2e-18
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size937
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1215.1364.1prot_H-paniculata_contig1215.1364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1215 10314..10682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.7177706-UTR-H-paniculata_contig1215:10161..103131622928935.7177706-UTR-H-paniculata_contig1215:10161..10313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1215 10162..10313 +
1691480673.1971247-UTR-H-paniculata_contig1215:10161..103131691480673.1971247-UTR-H-paniculata_contig1215:10161..10313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1215 10162..10313 +
1622928935.8076658-UTR-H-paniculata_contig1215:10682..110981622928935.8076658-UTR-H-paniculata_contig1215:10682..11098Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1215 10683..11098 +
1691480673.2202675-UTR-H-paniculata_contig1215:10682..110981691480673.2202675-UTR-H-paniculata_contig1215:10682..11098Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1215 10683..11098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928935.7364576-CDS-H-paniculata_contig1215:10313..106821622928935.7364576-CDS-H-paniculata_contig1215:10313..10682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1215 10314..10682 +
1691480673.2075772-CDS-H-paniculata_contig1215:10313..106821691480673.2075772-CDS-H-paniculata_contig1215:10313..10682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1215 10314..10682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1215.1364.1

>prot_H-paniculata_contig1215.1364.1 ID=prot_H-paniculata_contig1215.1364.1|Name=mRNA_H-paniculata_contig1215.1364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MPQQELDLIQHTQYTSARRMEDPSREDFSTCKCIFRYLSTVPDLGITFGD
KSNGHGLEGFLDADWAGDVEDRKSTTKYVFKLNGGAISWCSRKQEVVTWS
STEAEYVAAGEAGKEGGYLGSY*
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mRNA from alignment at H-paniculata_contig1215:10162..11098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1215.1364.1 ID=mRNA_H-paniculata_contig1215.1364.1|Name=mRNA_H-paniculata_contig1215.1364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig1215:10162..11098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATTTCGGCACCCAAGTCGGCCAACAAGCCCCCCGAACCGAAACCAC
TTGGGGCTGTACTGTCGGACATAGTCGCGGGAGTACAAGAAAATAGTAGT
AGAAGAAGTGCCAATTCAACTGAATACAGATGCATGGTAGGATCACTCAT
GTATGCCTCAACAGGAACTAGACCTGATACAGCATACGCAGTACACATCA
GCACGTCGTATGGAGGATCCATCTCGAGAAGACTTCAGTACATGCAAGTG
CATTTTTCGTTACCTCAGTACCGTACCTGACCTCGGCATTACGTTCGGCG
ATAAGAGCAATGGTCACGGTCTTGAAGGGTTTCTTGATGCCGACTGGGCG
GGAGATGTCGAGGACCGAAAGTCCACAACAAAATACGTATTCAAGCTAAA
CGGTGGTGCGATAAGTTGGTGCTCCAGGAAGCAAGAGGTAGTTACGTGGT
CCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGTAAGGAGGGG
GGATATCTTGGGAGTTACTAGGATCGATAGGTTTCGGGTGCAGGGGAAGC
ACGAGATTGTTTGAGGACAATAAATCAGCAATCAATCTCAGTAAGGGGTC
TGGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGTACTGAATTC
GAGAGTGGATTCGGGAAGGAATATTGGCGTTGAAATACGTGCAAACTGGC
GACCAACTCGCTGACATTTTAACGAAAGGACTGAGCAGAGTAAAGTTTCA
GAGACTTAGAATTTTACTCCTGTCATGTGTTTTTTCAGTATTATGAAAAC
AAGTGTCGTCGTTGATAGTTTTGGGCCGAGCAACGAAGTTATGCTGAACA
ATTTCCGTGATCCCATTGGATGTGGACGTTGTAATATTGAGAGGAAGTGT
CATTTTTTTATGGGAAAGGCTTGGCATCTTGTGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1215:10162..11098+

>mRNA_H-paniculata_contig1215.1364.1 ID=mRNA_H-paniculata_contig1215.1364.1|Name=mRNA_H-paniculata_contig1215.1364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig1215:10162..11098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCAACAGGAACTAGACCTGATACAGCATACGCAGTACACATCAGC
ACGTCGTATGGAGGATCCATCTCGAGAAGACTTCAGTACATGCAAGTGCA
TTTTTCGTTACCTCAGTACCGTACCTGACCTCGGCATTACGTTCGGCGAT
AAGAGCAATGGTCACGGTCTTGAAGGGTTTCTTGATGCCGACTGGGCGGG
AGATGTCGAGGACCGAAAGTCCACAACAAAATACGTATTCAAGCTAAACG
GTGGTGCGATAAGTTGGTGCTCCAGGAAGCAAGAGGTAGTTACGTGGTCC
AGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGTAAGGAGGGGGG
ATATCTTGGGAGTTACTAGATGCCTCAACAGGAACTAGACCTGATACAGC
ATACGCAGTACACATCAGCACGTCGTATGGAGGATCCATCTCGAGAAGAC
TTCAGTACATGCAAGTGCATTTTTCGTTACCTCAGTACCGTACCTGACCT
CGGCATTACGTTCGGCGATAAGAGCAATGGTCACGGTCTTGAAGGGTTTC
TTGATGCCGACTGGGCGGGAGATGTCGAGGACCGAAAGTCCACAACAAAA
TACGTATTCAAGCTAAACGGTGGTGCGATAAGTTGGTGCTCCAGGAAGCA
AGAGGTAGTTACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAG
AAGCGGGTAAGGAGGGGGGATATCTTGGGAGTTACTAG
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