prot_H-paniculata_contig5993.13654.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5993.13654.1
Unique Nameprot_H-paniculata_contig5993.13654.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length35
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.540e-15
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 32
            DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: E2BHJ3_HARSA (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=2 Tax=Formicidae TaxID=36668 RepID=E2BHJ3_HARSA)

HSP 1 Score: 62.4 bits (150), Expect = 2.540e-12
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 
Query:    1 LDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            L+C +DN I+ KDPI+CR+CGYRIMYKKRTKRC
Sbjct:    2 LECHNDNEIRQKDPIRCRECGYRIMYKKRTKRC 34
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A8C5SZC9_LATLA (RNA polymerase II, I and III subunit K n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SZC9_LATLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-11
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            DC  +N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 DCHKENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: R0L3R7_ANAPL (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0L3R7_ANAPL)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:    4 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 35
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7K9HX18_9AVES (RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K9HX18_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7L4JXA9_9AVES (RPAB4 protein (Fragment) n=11 Tax=Archelosauria TaxID=1329799 RepID=A0A7L4JXA9_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7L4G7R7_9COLU (RPAB4 protein (Fragment) n=16 Tax=Neognathae TaxID=8825 RepID=A0A7L4G7R7_9COLU)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7L2U2V8_BALRX (RPAB4 protein (Fragment) n=16 Tax=Aves TaxID=8782 RepID=A0A7L2U2V8_BALRX)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7K7KVE5_9AVES (RPAB4 protein (Fragment) n=11 Tax=Neognathae TaxID=8825 RepID=A0A7K7KVE5_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7K4LAU5_9AVES (RPAB4 protein (Fragment) n=6 Tax=Aves TaxID=8782 RepID=A0A7K4LAU5_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:    2 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 33
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI1.540e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
E2BHJ3_HARSA2.540e-1275.76DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A8C5SZC9_LATLA1.020e-1178.13RNA polymerase II, I and III subunit K n=1 Tax=Lat... [more]
R0L3R7_ANAPL1.060e-1175.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7K9HX18_9AVES1.550e-1175.00RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A7L4JXA9_9AVES1.590e-1175.00RPAB4 protein (Fragment) n=11 Tax=Archelosauria Ta... [more]
A0A7L4G7R7_9COLU1.590e-1175.00RPAB4 protein (Fragment) n=16 Tax=Neognathae TaxID... [more]
A0A7L2U2V8_BALRX1.590e-1175.00RPAB4 protein (Fragment) n=16 Tax=Aves TaxID=8782 ... [more]
A0A7K7KVE5_9AVES1.590e-1175.00RPAB4 protein (Fragment) n=11 Tax=Neognathae TaxID... [more]
A0A7K4LAU5_9AVES1.590e-1175.00RPAB4 protein (Fragment) n=6 Tax=Aves TaxID=8782 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 1..32
e-value: 2.7E-5
score: 33.6
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 2..29
e-value: 2.3E-14
score: 52.7
NoneNo IPR availableGENE3D2.20.28.30coord: 1..34
e-value: 2.4E-16
score: 60.8
NoneNo IPR availablePRODOMPD012151coord: 2..32
e-value: 1.0E-7
score: 128.0
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4PANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 2..33
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 2..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5993contigH-paniculata_contig5993:5133..5237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5993.13654.1mRNA_H-paniculata_contig5993.13654.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5993 5133..5237 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5993.13654.1 ID=prot_H-paniculata_contig5993.13654.1|Name=mRNA_H-paniculata_contig5993.13654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
LDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRCE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006591RNAP_P/RPABC4
IPR039747RPABC4
IPR029040RPABC4/Spt4