mRNA_H-paniculata_contig5993.13654.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5993.13654.1
Unique NamemRNA_H-paniculata_contig5993.13654.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.540e-15
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 96
            DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61
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BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: E2BHJ3_HARSA (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=2 Tax=Formicidae TaxID=36668 RepID=E2BHJ3_HARSA)

HSP 1 Score: 62.4 bits (150), Expect = 2.540e-12
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 LDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            L+C +DN I+ KDPI+CR+CGYRIMYKKRTKRC
Sbjct:    2 LECHNDNEIRQKDPIRCRECGYRIMYKKRTKRC 34
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BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A8C5SZC9_LATLA (RNA polymerase II, I and III subunit K n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SZC9_LATLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-11
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            DC  +N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 DCHKENEIKARDPIRCRECGYRIMYKKRTKRC 52
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BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: R0L3R7_ANAPL (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0L3R7_ANAPL)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:    4 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 35
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BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7K9HX18_9AVES (RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K9HX18_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7L4JXA9_9AVES (RPAB4 protein (Fragment) n=11 Tax=Archelosauria TaxID=1329799 RepID=A0A7L4JXA9_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7L4G7R7_9COLU (RPAB4 protein (Fragment) n=16 Tax=Neognathae TaxID=8825 RepID=A0A7L4G7R7_9COLU)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7L2U2V8_BALRX (RPAB4 protein (Fragment) n=16 Tax=Aves TaxID=8782 RepID=A0A7L2U2V8_BALRX)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7K7KVE5_9AVES (RPAB4 protein (Fragment) n=11 Tax=Neognathae TaxID=8825 RepID=A0A7K7KVE5_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
[Close]
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Match: A0A7K4LAU5_9AVES (RPAB4 protein (Fragment) n=6 Tax=Aves TaxID=8782 RepID=A0A7K4LAU5_9AVES)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 99
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5993.13654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI1.540e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
E2BHJ3_HARSA2.540e-1275.76DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A8C5SZC9_LATLA1.020e-1178.13RNA polymerase II, I and III subunit K n=1 Tax=Lat... [more]
R0L3R7_ANAPL1.060e-1175.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7K9HX18_9AVES1.550e-1175.00RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
A0A7L4JXA9_9AVES1.590e-1175.00RPAB4 protein (Fragment) n=11 Tax=Archelosauria Ta... [more]
A0A7L4G7R7_9COLU1.590e-1175.00RPAB4 protein (Fragment) n=16 Tax=Neognathae TaxID... [more]
A0A7L2U2V8_BALRX1.590e-1175.00RPAB4 protein (Fragment) n=16 Tax=Aves TaxID=8782 ... [more]
A0A7K7KVE5_9AVES1.590e-1175.00RPAB4 protein (Fragment) n=11 Tax=Neognathae TaxID... [more]
A0A7K4LAU5_9AVES1.590e-1175.00RPAB4 protein (Fragment) n=6 Tax=Aves TaxID=8782 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5993contigH-paniculata_contig5993:5133..5237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D8LHK5
Preferred namePOLR2K
KEGG rclassRC02795
KEGG koko:K03009,ko:K09122
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009653,GO:0009719,GO:0009826,GO:0009856,GO:0009860,GO:0009889,GO:0009893,GO:0009932,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0023052,GO:0030154,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040007,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044706,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051704,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060560,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Psort location Cytoplasmic, score
EggNOG OGsCOG1996@1,KOG3507@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.4403577-CDS-H-paniculata_contig5993:5132..52371622930662.4403577-CDS-H-paniculata_contig5993:5132..5237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5993 5133..5237 -
1691481394.861412-CDS-H-paniculata_contig5993:5132..52371691481394.861412-CDS-H-paniculata_contig5993:5132..5237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5993 5133..5237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5993.13654.1prot_H-paniculata_contig5993.13654.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5993 5133..5237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5993.13654.1

>prot_H-paniculata_contig5993.13654.1 ID=prot_H-paniculata_contig5993.13654.1|Name=mRNA_H-paniculata_contig5993.13654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
LDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRCE*
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mRNA from alignment at H-paniculata_contig5993:5133..5237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5993.13654.1 ID=mRNA_H-paniculata_contig5993.13654.1|Name=mRNA_H-paniculata_contig5993.13654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at H-paniculata_contig5993:5133..5237- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGACTGTGGGTCCGACAACCTGATCAAGGCGAAGGATCCCATCCAATG
TCGTCAGTGTGGATACCGCATCATGTACAAGAAGCGCACGAAGCGATGTG
AGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5993:5133..5237-

>mRNA_H-paniculata_contig5993.13654.1 ID=mRNA_H-paniculata_contig5993.13654.1|Name=mRNA_H-paniculata_contig5993.13654.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig5993:5133..5237- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAGACTGTGGGTCCGACAACCTGATCAAGGCGAAGGATCCCATCCAATG
TCGTCAGTGTGGATACCGCATCATGTACAAGAAGCGCACGAAGCGATGTG
AGTAATTAGACTGTGGGTCCGACAACCTGATCAAGGCGAAGGATCCCATC
CAATGTCGTCAGTGTGGATACCGCATCATGTACAAGAAGCGCACGAAGCG
ATGTGAGTAA
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