mRNA_H-paniculata_contig59802.13635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A1J3H344_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H344_NOCCA) HSP 1 Score: 55.1 bits (131), Expect = 2.000e-6 Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 94 NTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIE-VSYLPELNFNLFSLHKI 336
N W+ DSGA++HMT++L + +P TG D V++GDGS + + G L L HS P +++ V +P + NL S++++
Sbjct: 48 NAWLMDSGATHHMTSDLHHL-STNQPYTGNDAVLIGDGSGLSITHTGSLSLPSHSR---PLSLKSVLCVPNIKKNLISVYRL 125
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE) HSP 1 Score: 55.1 bits (131), Expect = 2.330e-6 Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1
Query: 49 LTNQNSVRNDAINNGNTWMADSGASNHMTNN---LAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLI-FHSTTEVPATI-EVSYLPELNFNLFSL 327
+ NSV D N+ TW+ADSGAS HM+N Y+ KP + +G+GS++ GK+ +I F +P + +V Y+P++ FNLFS+
Sbjct: 275 FSEMNSVLVD-FNDDETWIADSGASEHMSNQKEWFENYYEFDKPTE----IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSI 367
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 54.3 bits (129), Expect = 2.720e-6 Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 94 NTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSLHK 333
N W+ADSGASNH+T N++ + P TG + + +GDG+ + + G I H++ + V + P++ NL S+HK
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A8K0G3N9_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3N9_9COLE) HSP 1 Score: 53.9 bits (128), Expect = 5.690e-6 Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 49 LTNQNSVRNDAINNGNTWMADSGASNHMTNN---LAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLI-FHSTTEVPA-TIEVSYLPELNFNLFSL 327
L+ NSV D N+ TW+ADSGAS H +N Y+ KP + +G+GS+ GK+ LI F +P + +V Y+P++ FNLFS+
Sbjct: 197 LSEMNSVLVD-FNDDETWIADSGASEHTSNQKEWFENYYEFDKPTE----IKIGNGSVKNAHGKGKISLIAFEGQDYIPTESNDVLYVPDIKFNLFSI 289
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU) HSP 1 Score: 53.9 bits (128), Expect = 6.000e-6 Identity = 27/80 (33.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 94 NTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSLHK 333
N W+ADSGASNH+T+N++ + P TG + + +GDG+ + + I H++ + V ++P++ NL S+HK
Sbjct: 116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVHK 192
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 51.6 bits (122), Expect = 2.550e-5 Identity = 32/107 (29.91%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 37 LPVALTNQNSVRNDAINNGNTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSLHKI---QGIY 348
+ L +V +DA W ADSGA+NH+TN+L+ + +++P G + V + +GS + + +G LI +S T ++ ++P+++ NL S+ K G+Y
Sbjct: 49 MEALLATSETVTDDA------WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISKFAKDNGVY 146
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A834WCK0_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WCK0_9FABA) HSP 1 Score: 52.0 bits (123), Expect = 2.790e-5 Identity = 28/82 (34.15%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 82 INNGNTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSL 327
I N + W ADSG+SNH+TNNL+ + + + G + V + +GS + ++ +G L H ++ ++ Y+PEL+ NL S+
Sbjct: 365 ILNDDAWFADSGSSNHLTNNLSNIQ-VSQQYDGGEQVHIANGSGLPIQHIGSSEL--HHNSQTFKLNQILYVPELSKNLLSI 443
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A8K0CH72_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CH72_9COLE) HSP 1 Score: 51.6 bits (122), Expect = 3.780e-5 Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 49 LTNQNSVRNDAINNGNTWMADSGASNHMTNN---LAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLI-FHSTTEVPATI-EVSYLPELNFNLFSL 327
+ NSV D N+ TW+ADSGAS H++N Y+ KP + +G+GS++ GK+ LI F +P + +V Y+ ++ FNLFS+
Sbjct: 227 FSEMNSVLVD-FNDDETWIADSGASEHISNQKKWFENYYEFDKPTE----IKIGNGSVINAHGKGKISLIAFDGQDYIPTKLNDVVYVQDIKFNLFSI 319
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A1J3GHI3_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GHI3_NOCCA) HSP 1 Score: 48.5 bits (114), Expect = 4.650e-5 Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 82 INNGNTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGL 246
+++ +TW+ DSGAS+HMT++LA + + P +G D V+LGD S + + G +
Sbjct: 22 MSDSSTWLVDSGASHHMTSDLANL-SLHSPYSGGDDVLLGDNSALQISHTGSFSI 75
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A835JA97_9ROSI (NB-ARC domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JA97_9ROSI) HSP 1 Score: 51.2 bits (121), Expect = 5.060e-5 Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 100 WMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFS 324
W AD+GASNHMT L + +IR+ TG++ V++GDGS M + +G I T +P +V +P+L NL S
Sbjct: 413 WTADTGASNHMTGKLGMLTNIRQ-YTGDESVLIGDGSSMPILAIGDT-CIKQKATTLPLN-DVLLVPKLTKNLLS 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59802.13635.1 >prot_H-paniculata_contig59802.13635.1 ID=prot_H-paniculata_contig59802.13635.1|Name=mRNA_H-paniculata_contig59802.13635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp GKLDDTKVGECDLPVALTNQNSVRNDAINNGNTWMADSGASNHMTNNLAKback to top mRNA from alignment at H-paniculata_contig59802:198..551+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59802.13635.1 ID=mRNA_H-paniculata_contig59802.13635.1|Name=mRNA_H-paniculata_contig59802.13635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig59802:198..551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59802:198..551+ >mRNA_H-paniculata_contig59802.13635.1 ID=mRNA_H-paniculata_contig59802.13635.1|Name=mRNA_H-paniculata_contig59802.13635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig59802:198..551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |