mRNA_H-paniculata_contig59802.13635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59802.13635.1
Unique NamemRNA_H-paniculata_contig59802.13635.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A1J3H344_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H344_NOCCA)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-6
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   94 NTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIE-VSYLPELNFNLFSLHKI 336
            N W+ DSGA++HMT++L  +    +P TG D V++GDGS + +   G L L  HS    P +++ V  +P +  NL S++++
Sbjct:   48 NAWLMDSGATHHMTSDLHHL-STNQPYTGNDAVLIGDGSGLSITHTGSLSLPSHSR---PLSLKSVLCVPNIKKNLISVYRL 125          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A8K0DN47_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DN47_9COLE)

HSP 1 Score: 55.1 bits (131), Expect = 2.330e-6
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   49 LTNQNSVRNDAINNGNTWMADSGASNHMTNN---LAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLI-FHSTTEVPATI-EVSYLPELNFNLFSL 327
             +  NSV  D  N+  TW+ADSGAS HM+N        Y+  KP      + +G+GS++     GK+ +I F     +P  + +V Y+P++ FNLFS+
Sbjct:  275 FSEMNSVLVD-FNDDETWIADSGASEHMSNQKEWFENYYEFDKPTE----IKIGNGSVINAHGKGKISVIAFDGQDYIPTELNDVLYVPDIKFNLFSI 367          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-6
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   94 NTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSLHK 333
            N W+ADSGASNH+T N++ +     P TG + + +GDG+ + +   G    I H++      + V + P++  NL S+HK
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A8K0G3N9_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G3N9_9COLE)

HSP 1 Score: 53.9 bits (128), Expect = 5.690e-6
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   49 LTNQNSVRNDAINNGNTWMADSGASNHMTNN---LAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLI-FHSTTEVPA-TIEVSYLPELNFNLFSL 327
            L+  NSV  D  N+  TW+ADSGAS H +N        Y+  KP      + +G+GS+      GK+ LI F     +P  + +V Y+P++ FNLFS+
Sbjct:  197 LSEMNSVLVD-FNDDETWIADSGASEHTSNQKEWFENYYEFDKPTE----IKIGNGSVKNAHGKGKISLIAFEGQDYIPTESNDVLYVPDIKFNLFSI 289          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A5E4G702_PRUDU (PREDICTED: Retrovirus-related Pol poly from (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G702_PRUDU)

HSP 1 Score: 53.9 bits (128), Expect = 6.000e-6
Identity = 27/80 (33.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   94 NTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSLHK 333
            N W+ADSGASNH+T+N++ +     P TG + + +GDG+ + +        I H++      + V ++P++  NL S+HK
Sbjct:  116 NLWLADSGASNHVTSNMSNLGH-SSPYTGSETLRVGDGNSLPISHTRST--ILHTSNAKFHLLNVLHVPQVAHNLLSVHK 192          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 2.550e-5
Identity = 32/107 (29.91%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   37 LPVALTNQNSVRNDAINNGNTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSLHKI---QGIY 348
            +   L    +V +DA      W ADSGA+NH+TN+L+ +  +++P  G + V + +GS + +  +G   LI +S T      ++ ++P+++ NL S+ K     G+Y
Sbjct:   49 MEALLATSETVTDDA------WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISKFAKDNGVY 146          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A834WCK0_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WCK0_9FABA)

HSP 1 Score: 52.0 bits (123), Expect = 2.790e-5
Identity = 28/82 (34.15%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   82 INNGNTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFSL 327
            I N + W ADSG+SNH+TNNL+ +  + +   G + V + +GS + ++ +G   L  H  ++     ++ Y+PEL+ NL S+
Sbjct:  365 ILNDDAWFADSGSSNHLTNNLSNIQ-VSQQYDGGEQVHIANGSGLPIQHIGSSEL--HHNSQTFKLNQILYVPELSKNLLSI 443          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A8K0CH72_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0CH72_9COLE)

HSP 1 Score: 51.6 bits (122), Expect = 3.780e-5
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   49 LTNQNSVRNDAINNGNTWMADSGASNHMTNN---LAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLI-FHSTTEVPATI-EVSYLPELNFNLFSL 327
             +  NSV  D  N+  TW+ADSGAS H++N        Y+  KP      + +G+GS++     GK+ LI F     +P  + +V Y+ ++ FNLFS+
Sbjct:  227 FSEMNSVLVD-FNDDETWIADSGASEHISNQKKWFENYYEFDKPTE----IKIGNGSVINAHGKGKISLIAFDGQDYIPTKLNDVVYVQDIKFNLFSI 319          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A1J3GHI3_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GHI3_NOCCA)

HSP 1 Score: 48.5 bits (114), Expect = 4.650e-5
Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   82 INNGNTWMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGL 246
            +++ +TW+ DSGAS+HMT++LA +  +  P +G D V+LGD S + +   G   +
Sbjct:   22 MSDSSTWLVDSGASHHMTSDLANL-SLHSPYSGGDDVLLGDNSALQISHTGSFSI 75          
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Match: A0A835JA97_9ROSI (NB-ARC domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835JA97_9ROSI)

HSP 1 Score: 51.2 bits (121), Expect = 5.060e-5
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  100 WMADSGASNHMTNNLAKMYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLPELNFNLFS 324
            W AD+GASNHMT  L  + +IR+  TG++ V++GDGS M +  +G    I    T +P   +V  +P+L  NL S
Sbjct:  413 WTADTGASNHMTGKLGMLTNIRQ-YTGDESVLIGDGSSMPILAIGDT-CIKQKATTLPLN-DVLLVPKLTKNLLS 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59802.13635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A1J3H344_NOCCA2.000e-636.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A8K0DN47_9COLE2.330e-635.71Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A5E4GCQ9_PRUDU2.720e-635.00PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]
A0A8K0G3N9_9COLE5.690e-636.73Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A5E4G702_PRUDU6.000e-633.75PREDICTED: Retrovirus-related Pol poly from (Fragm... [more]
A0A834W4R7_9FABA2.550e-529.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A834WCK0_9FABA2.790e-534.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A8K0CH72_9COLE3.780e-534.69Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A1J3GHI3_NOCCA4.650e-538.18Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
A0A835JA97_9ROSI5.060e-541.33NB-ARC domain-containing protein n=1 Tax=Salix dun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59802contigH-paniculata_contig59802:198..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930660.3371425-CDS-H-paniculata_contig59802:197..5511622930660.3371425-CDS-H-paniculata_contig59802:197..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59802 198..551 +
1691481393.9319854-CDS-H-paniculata_contig59802:197..5511691481393.9319854-CDS-H-paniculata_contig59802:197..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59802 198..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59802.13635.1prot_H-paniculata_contig59802.13635.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59802 198..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59802.13635.1

>prot_H-paniculata_contig59802.13635.1 ID=prot_H-paniculata_contig59802.13635.1|Name=mRNA_H-paniculata_contig59802.13635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
GKLDDTKVGECDLPVALTNQNSVRNDAINNGNTWMADSGASNHMTNNLAK
MYDIRKPVTGEDVVMLGDGSIMMVEFVGKLGLIFHSTTEVPATIEVSYLP
ELNFNLFSLHKIQGIYSI
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mRNA from alignment at H-paniculata_contig59802:198..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59802.13635.1 ID=mRNA_H-paniculata_contig59802.13635.1|Name=mRNA_H-paniculata_contig59802.13635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig59802:198..551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGTTGGATGATACTAAGGTTGGAGAGTGCGATTTGCCTGTGGCCTT GACGAATCAAAATTCAGTTAGAAACGATGCAATCAACAATGGCAATACGT GGATGGCTGATTCAGGCGCCAGTAATCACATGACGAACAATCTTGCAAAA ATGTATGATATTCGCAAGCCGGTTACAGGGGAAGATGTGGTAATGTTGGG GGATGGATCGATTATGATGGTGGAGTTTGTGGGAAAGTTGGGTTTGATTT TTCACTCCACTACTGAGGTGCCTGCCACAATTGAAGTATCATACTTACCT GAGTTGAATTTCAACCTTTTTTCCCTCCACAAAATCCAAGGGATATATTC AATA
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Coding sequence (CDS) from alignment at H-paniculata_contig59802:198..551+

>mRNA_H-paniculata_contig59802.13635.1 ID=mRNA_H-paniculata_contig59802.13635.1|Name=mRNA_H-paniculata_contig59802.13635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig59802:198..551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGTTGGATGATACTAAGGTTGGAGAGTGCGATTTGCCTGTGGCCTT
GACGAATCAAAATTCAGTTAGAAACGATGCAATCAACAATGGCAATACGT
GGATGGCTGATTCAGGCGCCAGTAATCACATGACGAACAATCTTGCAAAA
ATGTATGATATTCGCAAGCCGGTTACAGGGGAAGATGTGGTAATGTTGGG
GGATGGATCGATTATGATGGTGGAGTTTGTGGGAAAGTTGGGTTTGATTT
TTCACTCCACTACTGAGGTGCCTGCCACAATTGAAGTATCATACTTACCT
GAGTTGAATTTCAACCTTTTTTCCCTCCACAAAATCCAAGGGATATATTC
AATAGGCAAGTTGGATGATACTAAGGTTGGAGAGTGCGATTTGCCTGTGG
CCTTGACGAATCAAAATTCAGTTAGAAACGATGCAATCAACAATGGCAAT
ACGTGGATGGCTGATTCAGGCGCCAGTAATCACATGACGAACAATCTTGC
AAAAATGTATGATATTCGCAAGCCGGTTACAGGGGAAGATGTGGTAATGT
TGGGGGATGGATCGATTATGATGGTGGAGTTTGTGGGAAAGTTGGGTTTG
ATTTTTCACTCCACTACTGAGGTGCCTGCCACAATTGAAGTATCATACTT
ACCTGAGTTGAATTTCAACCTTTTTTCCCTCCACAAAATCCAAGGGATAT
ATTCAATA
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