mRNA_H-paniculata_contig59797.13628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59797.13628.1
Unique NamemRNA_H-paniculata_contig59797.13628.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig59797.13628.1 vs. uniprot
Match: A0A444Y0U9_ARAHY (Integrase catalytic domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444Y0U9_ARAHY)

HSP 1 Score: 55.8 bits (133), Expect = 5.060e-6
Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   28 HAAWTALGEKYLNSSMQRRRLLMRQLDT-KVMGPSQDPDEYLTEIFYLRDELAYIGETFSEGRITEIILEGLTDDYDQ-ITYAAERDPDFSLKDMETTM 318
            H  W+ L   +++ +  R R L  QL + K  GP+ D   YL +I  + D LA +G   ++   T +IL+GL +DY   +TY   +DP +S+ ++E  +
Sbjct:  119 HDIWSRLHTHFVSQTKARIRQLQLQLKSIKKTGPASD---YLLQIKKVVDALATVGAPLTDAEYTNVILDGLNEDYQSFLTYVTAKDPPYSIPNLEALL 214
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BLAST of mRNA_H-paniculata_contig59797.13628.1 vs. uniprot
Match: UPI0010FC5D7A (uncharacterized protein LOC114925294 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI0010FC5D7A)

HSP 1 Score: 55.5 bits (132), Expect = 5.820e-6
Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   28 HAAWTALGEKYLNSSMQRRRLLMRQLDT-KVMGPSQDPDEYLTEIFYLRDELAYIGETFSEGRITEIILEGLTDDYDQ-ITYAAERDPDFSLKDMETTM 318
            H  W+ L   + + +  R R L  QL + K +GP+ D   YL +I  + D LA +G   ++   T +IL+GL +DY   +TY   +DP +S+ ++E  +
Sbjct:  168 HDIWSRLHTHFASQTKARIRQLQLQLKSIKKIGPASD---YLLQIKKVVDALAAVGAPLTDAEYTNVILDGLNEDYHSFLTYVTAKDPPYSIPNLEALL 263
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BLAST of mRNA_H-paniculata_contig59797.13628.1 vs. uniprot
Match: A0A6P4D6A4_ARADU (uncharacterized protein LOC107487032 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4D6A4_ARADU)

HSP 1 Score: 55.1 bits (131), Expect = 6.760e-6
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:   28 HAAWTALGEKYLNSSMQRRRLLMRQLD-TKVMGPSQDPDEYLTEIFYLRDELAYIGETFSEGRITEIILEGLTDDYDQ-ITYAAERDPDFSLKDMETTM 318
            H  W+ L   + + +  R R L  QL   K  GP+ D   YL +I  + D L  +G   ++   T IIL+GL +DY   +TY   +DP +S+ D+E  +
Sbjct:  119 HDIWSRLHTHFASQTKARIRQLQLQLKWIKKTGPASD---YLLQIKKVVDALVTVGAPLTDAEYTNIILDGLNEDYQSFLTYVTAKDPPYSIPDLEALL 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59797.13628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A444Y0U9_ARAHY5.060e-632.32Integrase catalytic domain-containing protein n=1 ... [more]
UPI0010FC5D7A5.820e-632.32uncharacterized protein LOC114925294 n=1 Tax=Arach... [more]
A0A6P4D6A4_ARADU6.760e-633.33uncharacterized protein LOC107487032 n=1 Tax=Arach... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59797contigH-paniculata_contig59797:445..942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930659.3973858-CDS-H-paniculata_contig59797:444..9421622930659.3973858-CDS-H-paniculata_contig59797:444..942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59797 445..942 +
1691481393.4777756-CDS-H-paniculata_contig59797:444..9421691481393.4777756-CDS-H-paniculata_contig59797:444..942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59797 445..942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59797.13628.1prot_H-paniculata_contig59797.13628.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59797 445..942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59797.13628.1

>prot_H-paniculata_contig59797.13628.1 ID=prot_H-paniculata_contig59797.13628.1|Name=mRNA_H-paniculata_contig59797.13628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
PEARQLPDGHAAWTALGEKYLNSSMQRRRLLMRQLDTKVMGPSQDPDEYL
TEIFYLRDELAYIGETFSEGRITEIILEGLTDDYDQITYAAERDPDFSLK
DMETTMRNMYANRIARVQISSSRRKGRESAMMASSSAFKGICNYCHKPGH
IKSECRKLKRRQMSSA
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mRNA from alignment at H-paniculata_contig59797:445..942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59797.13628.1 ID=mRNA_H-paniculata_contig59797.13628.1|Name=mRNA_H-paniculata_contig59797.13628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at H-paniculata_contig59797:445..942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGAGGCTAGACAACTACCCGATGGTCACGCGGCCTGGACAGCATTGGG
CGAGAAATATCTGAACTCGTCCATGCAGCGCCGCCGTCTACTTATGCGCC
AGCTAGACACCAAGGTCATGGGGCCTAGTCAAGACCCTGATGAGTACCTG
ACCGAGATATTCTATCTGCGCGACGAGCTCGCGTACATCGGGGAAACTTT
CTCGGAAGGGCGCATCACGGAAATCATTCTTGAAGGACTCACAGACGATT
ACGACCAGATCACATATGCCGCCGAGAGGGACCCCGATTTTTCTCTGAAA
GACATGGAAACCACGATGAGAAATATGTACGCCAACCGCATTGCGCGCGT
TCAAATCTCATCCTCACGCAGGAAGGGTCGTGAGTCAGCCATGATGGCCT
CGTCGTCGGCTTTCAAAGGCATCTGTAATTACTGCCACAAACCTGGACAT
ATCAAGAGCGAGTGTAGAAAGCTGAAGCGGCGGCAAATGTCTTCAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig59797:445..942+

>mRNA_H-paniculata_contig59797.13628.1 ID=mRNA_H-paniculata_contig59797.13628.1|Name=mRNA_H-paniculata_contig59797.13628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig59797:445..942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGAGGCTAGACAACTACCCGATGGTCACGCGGCCTGGACAGCATTGGG
CGAGAAATATCTGAACTCGTCCATGCAGCGCCGCCGTCTACTTATGCGCC
AGCTAGACACCAAGGTCATGGGGCCTAGTCAAGACCCTGATGAGTACCTG
ACCGAGATATTCTATCTGCGCGACGAGCTCGCGTACATCGGGGAAACTTT
CTCGGAAGGGCGCATCACGGAAATCATTCTTGAAGGACTCACAGACGATT
ACGACCAGATCACATATGCCGCCGAGAGGGACCCCGATTTTTCTCTGAAA
GACATGGAAACCACGATGAGAAATATGTACGCCAACCGCATTGCGCGCGT
TCAAATCTCATCCTCACGCAGGAAGGGTCGTGAGTCAGCCATGATGGCCT
CGTCGTCGGCTTTCAAAGGCATCTGTAATTACTGCCACAAACCTGGACAT
ATCAAGAGCGAGTGTAGAAAGCTGAAGCGGCGGCAAATGTCTTCAGCACC
CGAGGCTAGACAACTACCCGATGGTCACGCGGCCTGGACAGCATTGGGCG
AGAAATATCTGAACTCGTCCATGCAGCGCCGCCGTCTACTTATGCGCCAG
CTAGACACCAAGGTCATGGGGCCTAGTCAAGACCCTGATGAGTACCTGAC
CGAGATATTCTATCTGCGCGACGAGCTCGCGTACATCGGGGAAACTTTCT
CGGAAGGGCGCATCACGGAAATCATTCTTGAAGGACTCACAGACGATTAC
GACCAGATCACATATGCCGCCGAGAGGGACCCCGATTTTTCTCTGAAAGA
CATGGAAACCACGATGAGAAATATGTACGCCAACCGCATTGCGCGCGTTC
AAATCTCATCCTCACGCAGGAAGGGTCGTGAGTCAGCCATGATGGCCTCG
TCGTCGGCTTTCAAAGGCATCTGTAATTACTGCCACAAACCTGGACATAT
CAAGAGCGAGTGTAGAAAGCTGAAGCGGCGGCAAATGTCTTCAGCA
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