mRNA_H-paniculata_contig596.13604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 222 bits (565), Expect = 5.420e-68 Identity = 111/246 (45.12%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 10 LGVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADFILDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRPYPSRDFDGKIGIWHVCAIKRA*RNSVR---------REGG--------------QQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
L G ++RW ++GA + RI PSLS +++R DFI D+ + ++H+DE+WFYL ++++VR+F GE+ +V H+SH+PK M+I A RP P+ DFDGKIGIW +C I+ A R+S + R G ++YEFD TI+AEWY++WY D L A+KE MP L+ + VV QQDGA+PHTGK LN G GW V LVTQPAQSPDL INDLG
Sbjct: 98 LEFGKDTVRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLG 343
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.990e-29 Identity = 75/229 (32.75%), Postives = 114/229 (49.78%), Query Frame = 1
Query: 13 GVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADFI---LDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRP---YPSRD-FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
G+ S+ L R L+ R R+ P ++ H+ +R +F+ + + ++ + +HIDE WFYL+ R ++ E+ V K K HI K M + AV RP Y R +DGKIG+W ++ A R S RE G VT+ + Y+E+ + + +K+ PG + + QQD A PH D + G +GWS+ LV QPA SPD + DLG
Sbjct: 111 GIPSTTLWRVLQTKKLQRRTSRLKPMVTDKHKADRVEFVQAFVRPSTNGQMRWDDMLDRVHIDEKWFYLTLVNRRYYLWHDED-VPVRKCSSKRHIIKVMFLTAVARPRYDYTQRRMWDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWPGRRSHPIYIQQDNARPHVEVDDAA-VTLAGHSDGWSIQLVAQPAMSPDFNVLDLG 337
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 123 bits (309), Expect = 2.290e-29 Identity = 74/229 (32.31%), Postives = 108/229 (47.16%), Query Frame = 1
Query: 13 GVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADF---ILDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRPYPS----RDFDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
GV + L R +K R R+ P L+ HR R +F + + R + +HIDE WFY++ R ++ +E K Q K HI K M + AV RP + +DGK+G+W + A R S R+ G +T+ Y+ + D + A++ PG +G + QQD A PH D L G EGW++ L+ QPAQSPD + DLG
Sbjct: 111 GVPKTALWRLVKAKKLNRRTSRLRPMLTPQHRVARYNFAKSFIRDGYQGRRQWHDMLDCVHIDEKWFYITQVNRRFYLW-HDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLG 337
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.350e-27 Identity = 67/208 (32.21%), Postives = 107/208 (51.44%), Query Frame = 1
Query: 76 RITPSLSLTHRKNRADFI---LDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRP-YPSRD---FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
R+ P L+ H+ +R F+ L A + + +HIDE WFY++ R ++ +E V + K + K HI K M + AV RP Y +R+ +DG+IG+W + A R+S R+ G T+ + Y+ + D + A++ P K ++ QQD A PH + + G GW+++L +QPAQSPDL + DLG
Sbjct: 7 RLKPMLTDKHKSDRMAFVQRHLRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLW-SDEAVPTRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVV-AAGRQGGWTISLCSQPAQSPDLNVLDLG 212
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A6A5ATA6_9STRA (HTH_Tnp_Tc3_2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ATA6_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.560e-27 Identity = 71/232 (30.60%), Postives = 111/232 (47.84%), Query Frame = 1
Query: 4 VCLGVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADF---ILDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRP---YPSRD-FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
V G+ + L R L+ R R+ P ++ H+ +R F + + N + + + +HIDE WFYL+ R ++ +E K K HI K M + AV RP Y + +DGK+G+W A++ A R S R G + + +Y+++ D + A+K+ PG + + QQD A PH D + G +GW + LV QPA SPD + DLG
Sbjct: 108 VSSGIPRTTLWRVLQTKKLQRRTSRLKPMVTEKHKADRLAFARSFVHGTSCNGMVWHDMYDRVHIDEKWFYLTEVNRRYYLW-HDESTPVRKCNSKRHIIKVMFLTAVARPRFDYARKTMWDGKVGMWPFVAVRPAQRKSKNRARGALITTPIVVTKPFYRQYLLDHVIPAIKQAWPGPRAHPIYIQQDNARPHVEVDDAA-VTAAGCSDGWKIQLVAQPAMSPDFNVLDLG 337
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A6A5A8R5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8R5_9STRA) HSP 1 Score: 116 bits (291), Expect = 4.490e-27 Identity = 77/228 (33.77%), Postives = 109/228 (47.81%), Query Frame = 1
Query: 13 GVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADFILD--QAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRP-YPSRD---FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
G+ + L R LK R RI P L+ T ++ RA F + ARN++ + +HIDE WFY++ R ++ +E V K K HI K M + AV RP Y S +DGKIG+W A R+ R G +T+ Y+ + + ++K PG + + QQD A PH G D L + G +GW + LV QPA SPD + DLG
Sbjct: 105 GIPKTSLWRLLKPKKLKRRTSRIKPMLTETQKEARAVFARSFLREARNQMHWHDMLDRVHIDEKWFYVTLINRRYYLW-HDEPVPVRKGASKRHIVKVMFLTAVARPRYDSAKKSTWDGKIGMWPFVTKAPAKRSRKNRVRGTIVTTPMTVTKPIYRHFLLQHVIPSIKLLWPGRRDNPIYIQQDNARPHVGVDDLAMV-AAGCSDGWHIQLVAQPAMSPDFNVLDLG 330
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA) HSP 1 Score: 117 bits (293), Expect = 7.580e-27 Identity = 74/228 (32.46%), Postives = 112/228 (49.12%), Query Frame = 1
Query: 13 GVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADFILDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRPYPSRD----FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMP-GLKGEEVVAQQDGATPHTGKDTLRK-LNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
G+ S L R ++ + P L+ ++ R ++IL+ N F F+ IHIDE WFYL + + PGE +ST + K+H+ K M + A RP + FDGKIGIW + A R+SV R G ++ E Y+ + L A+ E P G E+ Q+D A PH K T+R+ + + +GW++ + TQP SPD+ + DLG
Sbjct: 211 GIPKSSLHRLVRRGDMRKHNGTTKPLLTAKNKLKRVEWILEHIDDNG-RFDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTS-KSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPH--KATIREEVKAAAASKGWNITVKTQPPNSPDMNVLDLG 434
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: W4FC38_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FC38_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.410e-26 Identity = 68/232 (29.31%), Postives = 106/232 (45.69%), Query Frame = 1
Query: 4 VCLGVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADF---ILDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRPYPSRD----FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMPGLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
V G+ + L R L+ R R+ P ++ ++ +R F + + A N + + +HIDE WFYL+ R +E K + K HI K M + AV RP +DGK+G+W ++ A R+S R G + + Y+++ D + +K+ PG + + QQD A PH D + G +GW + LV QPA SPD + DLG
Sbjct: 70 VSSGIPRTTLWRILQTKKLQRRTSRLKPMVTDQYKADRVAFARSFVQETANNDMVWHEMCDCVHIDEKWFYLTEVNRRYYYLWHDEATPVRKCKPKRHIIKVMFLAAVARPRFDHARKTMWDGKVGMWPFVSVLPAQRSSKNRARGTLITTPIVVTKPLYRQYLLDHVIPTIKQAWPGPRAHPIYIQQDNARPHVEVDDAA-VTAAGCSDGWKIQLVAQPAMSPDFNVLDLG 300
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: A0A6A3EEJ7_9STRA (Uncharacterized protein n=8 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EEJ7_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.760e-26 Identity = 77/223 (34.53%), Postives = 108/223 (48.43%), Query Frame = 1
Query: 31 LQRWLKEMGATRVKRRITPSLSLTHRKNRADFILDQAARN---RITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTK-----VQHKSHIPKAMLIYAVLRPYPSRDFDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDVTINAEWYQEWYNDSFLAALKENMP-GLKGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKIND 672
+ R KE R RR P LSL H +R + +D+ R R F + ++H+DE WFY+ V + G++ V S + VQ+K HI K M + AV RP D+DGK+GIW V R R S R G VT+ E ++ + + A+KE P KG + QQD A PH ++ + G GW++ + QPAQSPDL D
Sbjct: 110 INRLYKEGYLRRALRRTRPLLSLKHMSDRLKYCVDRVQRTMDGRHFFDPMYDVVHLDEKWFYMKKVGKHVYILTGKDDVPSEEPPVQFVQNKRHIKKVMFLCAVARP--RGDWDGKVGIWPVVKNYRTQRWSRNRPAGIDEVHPVTMAREIDRDMLINDVIPAIKEKWPQAQKGISIRLQQDNAKPHVLENDAAVI-AAGCSNGWTMYPLNQPAQSPDLNCLD 329
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU) HSP 1 Score: 115 bits (287), Expect = 4.080e-26 Identity = 74/228 (32.46%), Postives = 108/228 (47.37%), Query Frame = 1
Query: 13 GVGSSKLQRWLKEMGATRVKRRITPSLSLTHRKNRADFILDQAARNRITFRSGFQIIHIDEAWFYLSCDRDRVRMFPGEERVESTKVQHKSHIPKAMLIYAVLRPYPSRD----FDGKIGIWHVCAIKRA*RNSVRREGGQQYEFDV-TINAEWYQEWYNDSFLAALKENMPGL-KGEEVVAQQDGATPHTGKDTLRKLNEFGSDEGWSVNLVTQPAQSPDLKINDLG 678
G+ + L ++K+ R + P L+ ++K R +F L + F + IHIDE WFYL + + GE ST + K I K M + AV RP D FDGKIGIW + A RNSV R G ++ ++NA YQ+ + L A++E P K + Q+D A PH + + E + GW++ + TQP SPD + DLG
Sbjct: 178 GIARTTLGNYVKKGQILRHSGAVKPFLTEKNKKARVEFALSLIKPDG-KFEDMYDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCWKSRPIFIQEDNAKPHHLRSRAA-VREAAREAGWNITVTTQPPNSPDFNVLDLG 402 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig596.13604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig596.13604.1 >prot_H-paniculata_contig596.13604.1 ID=prot_H-paniculata_contig596.13604.1|Name=mRNA_H-paniculata_contig596.13604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp MGATRVKRRITPSLSLTHRKNRADFILDQAARNRITFRSGFQIIHIDEAWback to top mRNA from alignment at H-paniculata_contig596:12127..12804- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig596.13604.1 ID=mRNA_H-paniculata_contig596.13604.1|Name=mRNA_H-paniculata_contig596.13604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at H-paniculata_contig596:12127..12804- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig596:12127..12804- >mRNA_H-paniculata_contig596.13604.1 ID=mRNA_H-paniculata_contig596.13604.1|Name=mRNA_H-paniculata_contig596.13604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig596:12127..12804- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |