mRNA_H-paniculata_contig59569.13601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME) HSP 1 Score: 66.2 bits (160), Expect = 4.200e-11 Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKGLKI 195
E LH+DL GPM++ SLGG YV+++VDDYSRF V+F+K KSDA S KG KI
Sbjct: 93 ELLHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKI 155
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS) HSP 1 Score: 65.5 bits (158), Expect = 4.740e-11 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKG 186
+H+DL GPM+V S+GG YV ++VDDYSR+ V+FI+ KSD A+ + + + IT KG
Sbjct: 152 VHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG 209
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA) HSP 1 Score: 65.5 bits (158), Expect = 7.860e-11 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKG 186
+H+DL GPM+V S+GG YV ++VDDYSR+ V+FI+ KSD A+ + + + IT KG
Sbjct: 542 VHMDLMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG 599
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A1J3FE06_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FE06_NOCCA) HSP 1 Score: 63.2 bits (152), Expect = 1.010e-10 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKG 186
+H+DL GPM+V S+GG YV ++VDDYSR+ V+FI+ KSD + + + + IT KG
Sbjct: 79 VHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMNSFKIWALQVITEKG 136
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A0V0SQY1_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0SQY1_9BILA) HSP 1 Score: 60.1 bits (144), Expect = 2.880e-10 Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAE 168
+HVDL GPM VTSLGGS Y ++ DD+SR++ V F+K+K D ++++ E
Sbjct: 34 IHVDLCGPMHVTSLGGSKYFLVFKDDFSRYRRVFFLKRKDDVAQCLETFLNE 85
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: UPI001D059FF3 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D059FF3) HSP 1 Score: 59.7 bits (143), Expect = 5.820e-10 Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIA 165
ER+H DL G SL G SY I +DDYS++ + F+KKKSDA AA Q YIA
Sbjct: 43 ERIHSDLSGKFSTPSLRGFSYNITFIDDYSKYAHLYFLKKKSDAAAATQRYIA 95
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A699JK32_TANCI (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JK32_TANCI) HSP 1 Score: 62.8 bits (151), Expect = 6.880e-10 Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDAT 141
LH+DLGGPMRV S+ G Y+++I+DDYSRF VK ++ K +AT
Sbjct: 518 LHMDLGGPMRVESVNGKKYILVIIDDYSRFTRVKLLRSKDEAT 560
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A5A7TIF9_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TIF9_CUCME) HSP 1 Score: 62.4 bits (150), Expect = 9.460e-10 Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSD 135
E LH+DL GPM++ SLGG YV+++VDDYSRF ++F+K KSD
Sbjct: 538 ELLHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWIRFLKGKSD 580
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI) HSP 1 Score: 62.4 bits (150), Expect = 9.550e-10 Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKGLKI 195
+H+DL GPMRV S GG+ Y + ++DDYSR+ ++F+KKKSD A + + T KG KI
Sbjct: 467 IHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKI 527
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: U5CKE4_AMBTC (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5CKE4_AMBTC) HSP 1 Score: 62.0 bits (149), Expect = 1.270e-9 Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKGLKIG 198
E +HVDL GPM+ S+ G YV+++VDDYSRF V+F++ KSD + + I T K K+G
Sbjct: 389 ELMHVDLMGPMQNESISGKRYVMVLVDDYSRFTWVEFLRDKSDTFGSFSALILRLQTEKDSKVG 452 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59569.13601.1 >prot_H-paniculata_contig59569.13601.1 ID=prot_H-paniculata_contig59569.13601.1|Name=mRNA_H-paniculata_contig59569.13601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp AAERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHback to top mRNA from alignment at H-paniculata_contig59569:12..213+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig59569.13601.1 ID=mRNA_H-paniculata_contig59569.13601.1|Name=mRNA_H-paniculata_contig59569.13601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=202bp|location=Sequence derived from alignment at H-paniculata_contig59569:12..213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig59569:12..213+ >mRNA_H-paniculata_contig59569.13601.1 ID=mRNA_H-paniculata_contig59569.13601.1|Name=mRNA_H-paniculata_contig59569.13601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig59569:12..213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |