mRNA_H-paniculata_contig59569.13601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59569.13601.1
Unique NamemRNA_H-paniculata_contig59569.13601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME)

HSP 1 Score: 66.2 bits (160), Expect = 4.200e-11
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKGLKI 195
            E LH+DL GPM++ SLGG  YV+++VDDYSRF  V+F+K KSDA     S        KG KI
Sbjct:   93 ELLHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKI 155          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS)

HSP 1 Score: 65.5 bits (158), Expect = 4.740e-11
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKG 186
            +H+DL GPM+V S+GG  YV ++VDDYSR+  V+FI+ KSD  A+ + +  + IT KG
Sbjct:  152 VHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG 209          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA)

HSP 1 Score: 65.5 bits (158), Expect = 7.860e-11
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKG 186
            +H+DL GPM+V S+GG  YV ++VDDYSR+  V+FI+ KSD  A+ + +  + IT KG
Sbjct:  542 VHMDLMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG 599          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A1J3FE06_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FE06_NOCCA)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-10
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKG 186
            +H+DL GPM+V S+GG  YV ++VDDYSR+  V+FI+ KSD   + + +  + IT KG
Sbjct:   79 VHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMNSFKIWALQVITEKG 136          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A0V0SQY1_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V0SQY1_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 2.880e-10
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAE 168
            +HVDL GPM VTSLGGS Y ++  DD+SR++ V F+K+K D     ++++ E
Sbjct:   34 IHVDLCGPMHVTSLGGSKYFLVFKDDFSRYRRVFFLKRKDDVAQCLETFLNE 85          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: UPI001D059FF3 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D059FF3)

HSP 1 Score: 59.7 bits (143), Expect = 5.820e-10
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIA 165
            ER+H DL G     SL G SY I  +DDYS++  + F+KKKSDA AA Q YIA
Sbjct:   43 ERIHSDLSGKFSTPSLRGFSYNITFIDDYSKYAHLYFLKKKSDAAAATQRYIA 95          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A699JK32_TANCI (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JK32_TANCI)

HSP 1 Score: 62.8 bits (151), Expect = 6.880e-10
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDAT 141
            LH+DLGGPMRV S+ G  Y+++I+DDYSRF  VK ++ K +AT
Sbjct:  518 LHMDLGGPMRVESVNGKKYILVIIDDYSRFTRVKLLRSKDEAT 560          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A5A7TIF9_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TIF9_CUCME)

HSP 1 Score: 62.4 bits (150), Expect = 9.460e-10
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSD 135
            E LH+DL GPM++ SLGG  YV+++VDDYSRF  ++F+K KSD
Sbjct:  538 ELLHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWIRFLKGKSD 580          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI)

HSP 1 Score: 62.4 bits (150), Expect = 9.550e-10
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   13 LHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKGLKI 195
            +H+DL GPMRV S GG+ Y + ++DDYSR+  ++F+KKKSD  A  + +     T KG KI
Sbjct:  467 IHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKI 527          
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Match: U5CKE4_AMBTC (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5CKE4_AMBTC)

HSP 1 Score: 62.0 bits (149), Expect = 1.270e-9
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    7 ERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAHQSYIAEYITPKGLKIG 198
            E +HVDL GPM+  S+ G  YV+++VDDYSRF  V+F++ KSD   +  + I    T K  K+G
Sbjct:  389 ELMHVDLMGPMQNESISGKRYVMVLVDDYSRFTWVEFLRDKSDTFGSFSALILRLQTEKDSKVG 452          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59569.13601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7TVE6_CUCME4.200e-1152.38Integrase catalytic domain-containing protein n=2 ... [more]
A0A6D2HW89_9BRAS4.740e-1150.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A1J3ITQ9_NOCCA7.860e-1150.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3FE06_NOCCA1.010e-1048.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0SQY1_9BILA2.880e-1048.08Retrovirus-related Pol polyprotein from transposon... [more]
UPI001D059FF35.820e-1054.72uncharacterized protein n=1 Tax=Morchella sextelat... [more]
A0A699JK32_TANCI6.880e-1058.14gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A5A7TIF9_CUCME9.460e-1060.47Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A6H5GTD8_9HEMI9.550e-1047.54Integrase catalytic domain-containing protein (Fra... [more]
U5CKE4_AMBTC1.270e-945.31gag_pre-integrs domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59569contigH-paniculata_contig59569:12..213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue9.3e-08
Seed eggNOG ortholog13333.ERM93380
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930655.6836293-CDS-H-paniculata_contig59569:11..2121622930655.6836293-CDS-H-paniculata_contig59569:11..212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59569 12..212 +
1691481391.8919952-CDS-H-paniculata_contig59569:11..2121691481391.8919952-CDS-H-paniculata_contig59569:11..212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59569 12..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59569.13601.1prot_H-paniculata_contig59569.13601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59569 12..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59569.13601.1

>prot_H-paniculata_contig59569.13601.1 ID=prot_H-paniculata_contig59569.13601.1|Name=mRNA_H-paniculata_contig59569.13601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
AAERLHVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIKKKSDATAAH
QSYIAEYITPKGLKIGA
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mRNA from alignment at H-paniculata_contig59569:12..213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59569.13601.1 ID=mRNA_H-paniculata_contig59569.13601.1|Name=mRNA_H-paniculata_contig59569.13601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=202bp|location=Sequence derived from alignment at H-paniculata_contig59569:12..213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGAGCGCCTGCACGTCGACCTGGGCGGACCCATGCGAGTAACCAG CTTGGGCGGTAGCTCGTATGTGATCATCATTGTCGACGACTACTCACGGT TCCAGGCTGTCAAGTTCATCAAGAAGAAGAGCGATGCCACTGCAGCTCAC CAGAGCTACATTGCCGAATACATCACGCCGAAGGGACTCAAGATTGGCGC CA
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Coding sequence (CDS) from alignment at H-paniculata_contig59569:12..213+

>mRNA_H-paniculata_contig59569.13601.1 ID=mRNA_H-paniculata_contig59569.13601.1|Name=mRNA_H-paniculata_contig59569.13601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig59569:12..213+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGGAGCGCCTGCACGTCGACCTGGGCGGACCCATGCGAGTAACCAG
CTTGGGCGGTAGCTCGTATGTGATCATCATTGTCGACGACTACTCACGGT
TCCAGGCTGTCAAGTTCATCAAGAAGAAGAGCGATGCCACTGCAGCTCAC
CAGAGCTACATTGCCGAATACATCACGCCGAAGGGACTCAAGATTGGCGC
CGCAGCGGAGCGCCTGCACGTCGACCTGGGCGGACCCATGCGAGTAACCA
GCTTGGGCGGTAGCTCGTATGTGATCATCATTGTCGACGACTACTCACGG
TTCCAGGCTGTCAAGTTCATCAAGAAGAAGAGCGATGCCACTGCAGCTCA
CCAGAGCTACATTGCCGAATACATCACGCCGAAGGGACTCAAGATTGGCG
CC
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