mRNA_H-paniculata_contig5934.13565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5934.13565.1
Unique NamemRNA_H-paniculata_contig5934.13565.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A8J5XPH7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPH7_DIALT)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-13
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  168 MNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRYVAP 404
            M+PLVRDL KRF+LV + +P G   V+ +A  ALR  A L DE+EIKRAV +GR   RE +   K  KYR ++KRY +P
Sbjct:    1 MHPLVRDLYKRFLLVGKDYPGGLALVRRKAKEALRNQAHLQDELEIKRAVARGRWMVRELQGIIKLKKYREMKKRYSSP 79          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A2R5GAV0_9STRA (Electron transfer flavoprotein regulatory factor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAV0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.460e-11
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  168 MNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRY 395
            M+PLVRDL KR + V + +P G  +VK +A   + +NA LTDEV+IK+ V +GR   RE +   K  KYR L+KRY
Sbjct:    1 MHPLVRDLYKRLLTVGKEYPQGLDWVKSKAKPWIMQNAALTDEVDIKKKVAEGRFWVREMQSVIKLKKYRTLKKRY 76          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: G4YT11_PHYSP (Complex1_LYR_dom domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4YT11_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 1.300e-9
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  165 LMNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRY 395
            +M+P VRDL KRF+LV R +P G  +V+E+A AA  +N  LTD V IK+A+ +GR   RE     +  KYR L  RY
Sbjct:    1 MMDPKVRDLYKRFLLVGRDYPLGLSHVREKAKAAFFQNRDLTDPVAIKKAIKRGRWMVREMVGVIQLKKYRTLNSRY 77          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A485K3V6_9STRA (Aste57867_786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3V6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.230e-9
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  165 LMNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRY 395
            +M+PLVRD  KR +LV R +P G  YV+E+A  A  + A LT++ EIKRAV +GR  A+E     +  KYR + +RY
Sbjct:    1 MMHPLVRDAYKRLLLVGRDYPLGLDYVREKAKEAFLKQAHLTNDEEIKRAVHRGRWMAKEMIGVIQLKKYRAMNQRY 77          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A7S4B2S6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2S6_CHRCT)

HSP 1 Score: 64.3 bits (155), Expect = 8.160e-9
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  162 SLMNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRYVAP 404
            S MNPLVRDL +R ++V   +P+G  YV+ RA A  R+NA + + VE+KRAV  GR   +E     +  KYR ++KRY AP
Sbjct:   90 STMNPLVRDLYRRIIVVGADYPAGLDYVRNRAKAEFRKNAHV-EGVELKRAVNYGRYMVKEMIGVIQLKKYREIKKRYEAP 169          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A2P4Y5H8_9STRA (NADH-ubiquinone oxidoreductase complex 1/LYR family protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5H8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.180e-8
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  165 LMNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRYVA 401
            +++P VRDL KRF+LV R +P G  +V+E+   A  +N GL+D V IK+AV +GR   RE     +  KYR L  RY +
Sbjct:    1 MIDPKVRDLYKRFLLVGRDYPLGLSHVREKVKTAFFQNRGLSDPVAIKKAVKRGRWMVREMVGVIQLKKYRTLNSRYTS 79          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: D0N742_PHYIT (Complex1_LYR_dom domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=D0N742_PHYIT)

HSP 1 Score: 61.6 bits (148), Expect = 2.070e-8
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  168 MNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRYVA 401
            M+P VRDL KRF+LV R +P G  +V+E+  AA  +   LTD V IK+A+ +GR   RE     +  KYR L  RY +
Sbjct:    1 MDPKVRDLYKRFLLVGRDYPLGLSHVREKVKAAFYQKRDLTDPVAIKKAIKRGRWVVREMVGVIQLKKYRTLNSRYTS 78          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: M4BZ20_HYAAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZ20_HYAAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.170e-8
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  168 MNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRYVA 401
            M+P VRDL KRF+LV R +P G  +V+E+  AA   N  LTD V +K+A+ +GR   RE     +  KYR L  RY +
Sbjct:    1 MDPKVRDLYKRFLLVGRDYPLGLNHVREKVKAAFLFNRNLTDPVAMKKAIKRGRWMVREIIGVIQLKKYRTLNSRYTS 78          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A329S5G4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5G4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.620e-8
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  168 MNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRY 395
            M P VRDL KRF+LV R +P G  +V+E+   A  +N  LTD V IK+A+ +GR   RE     +  KYR L  RY
Sbjct:    1 MEPKVRDLYKRFLLVGRDYPLGLGHVREKVKVAFFQNRDLTDTVAIKKAIKRGRWMVREMVGVIQLKKYRTLNSRY 76          
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Match: A0A6G0WG47_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WG47_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.430e-7
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  168 MNPLVRDLCKRFVLVARRHPSGERYVKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKRY 395
            M+PLVRD+ KR ++V R +P G  YV+E+A  A  + A LT + EIKRAV +GR   +E     +  KYR +  RY
Sbjct:    1 MHPLVRDVYKRILVVGRDYPMGLDYVREKAKEAFYKEAHLTADEEIKRAVHRGRWMVKEMIGVIQLKKYRTMNARY 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5934.13565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A8J5XPH7_DIALT1.180e-1351.90Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A2R5GAV0_9STRA1.460e-1148.68Electron transfer flavoprotein regulatory factor 1... [more]
G4YT11_PHYSP1.300e-948.05Complex1_LYR_dom domain-containing protein (Fragme... [more]
A0A485K3V6_9STRA7.230e-946.75Aste57867_786 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A7S4B2S6_CHRCT8.160e-946.91Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2P4Y5H8_9STRA1.180e-844.30NADH-ubiquinone oxidoreductase complex 1/LYR famil... [more]
D0N742_PHYIT2.070e-844.87Complex1_LYR_dom domain-containing protein n=9 Tax... [more]
M4BZ20_HYAAE2.170e-844.87Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A329S5G4_9STRA5.620e-846.05Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6G0WG47_9STRA2.430e-744.74Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5934contigH-paniculata_contig5934:1537..2490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue8.3e-09
Seed eggNOG ortholog42099.EPrPV00000014084
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LYR motif-containing protein 5. Source PGD
EggNOG OGs1MHWB@121069,2D4PQ@1,2S531@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size954
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5934.13565.1prot_H-paniculata_contig5934.13565.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5934 1629..1964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.389838-UTR-H-paniculata_contig5934:1536..16281622930651.389838-UTR-H-paniculata_contig5934:1536..1628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5934 1537..1628 +
1691481389.925739-UTR-H-paniculata_contig5934:1536..16281691481389.925739-UTR-H-paniculata_contig5934:1536..1628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5934 1537..1628 +
1622930651.432883-UTR-H-paniculata_contig5934:1964..24901622930651.432883-UTR-H-paniculata_contig5934:1964..2490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5934 1965..2490 +
1691481389.949312-UTR-H-paniculata_contig5934:1964..24901691481389.949312-UTR-H-paniculata_contig5934:1964..2490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5934 1965..2490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930651.4133325-CDS-H-paniculata_contig5934:1628..19641622930651.4133325-CDS-H-paniculata_contig5934:1628..1964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5934 1629..1964 +
1691481389.9365234-CDS-H-paniculata_contig5934:1628..19641691481389.9365234-CDS-H-paniculata_contig5934:1628..1964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5934 1629..1964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5934.13565.1

>prot_H-paniculata_contig5934.13565.1 ID=prot_H-paniculata_contig5934.13565.1|Name=mRNA_H-paniculata_contig5934.13565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MMNKTNYHSTHLLLYLRPFAGHVSLMNPLVRDLCKRFVLVARRHPSGERY
VKERAMAALRRNAGLTDEVEIKRAVVQGRRAAREAEDFAKFCKYRVLRKR
YVAPAAAAADD*
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mRNA from alignment at H-paniculata_contig5934:1537..2490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5934.13565.1 ID=mRNA_H-paniculata_contig5934.13565.1|Name=mRNA_H-paniculata_contig5934.13565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=954bp|location=Sequence derived from alignment at H-paniculata_contig5934:1537..2490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACATACGGTGCTGTTGGCAATTCATTGTAGAGAAGATATAATGGCCTCC ATCAATCGTAAGCAGCAGATGTAGGAGCAGCGCTCTAGTGTGATGATGAA CAAAACAAATTATCACAGTACACATCTACTTCTGTATCTCCGCCCCTTTG CCGGCCACGTTTCTCTGATGAACCCGTTAGTGCGCGACCTCTGCAAGAGG TTCGTGCTCGTCGCCCGGCGTCACCCTTCCGGAGAGCGATATGTCAAAGA AAGGGCGATGGCAGCGCTCAGGAGAAATGCAGGACTCACGGACGAAGTAG AAATCAAACGAGCAGTAGTACAAGGAAGACGAGCAGCAAGAGAAGCTGAG GATTTCGCCAAGTTCTGTAAATACCGAGTTTTGCGAAAGAGGTACGTCGC TCCAGCAGCGGCGGCGGCTGATGACTGATATGATTTGTATGTAATCATCT GATGATCCTGTATCTTTTACTACGAAGAATAGCTCGGTTGTGCCCGCGGG TATTGTGCGTGTTGGAGTCGCTGGTGTAATTCTGTTTCTTGTTCGGTTGC GTATTCAAATTAGTACTGTATCCAAGACCGAAGACCAGTACTCCTTGTTG TACAGTAGTAGTACAGTCAGTACACGTAGTTGCTGGCTGCTTGTGCCGCG CCATGTTGTGGGTATTTCCCGCCCGTCGTGTGTTGGATCCCAATGATTGC GAGGCAATACTGGTGTTTGTGTTAATGAGGTACTATTTAGTATTTAGGCC TTATCTACAAGCAGGAAGATACATGTTTTCAGGTGCGATCAGGTTGTCAC CGCCTTCGGCCGTTTGCCCGATATTGTGGGGAAATCTACCAGTTAATTTT ATCAAGCATTTTTGGTTGTGGCACTTCGTGTGACATGAATTTTTGGCCCG GCCGGGTGCTTGCGACAAAGTTCGACGCGTGATACCTGATAGTCCTGTGC CGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig5934:1537..2490+

>mRNA_H-paniculata_contig5934.13565.1 ID=mRNA_H-paniculata_contig5934.13565.1|Name=mRNA_H-paniculata_contig5934.13565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig5934:1537..2490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAACAAAACAAATTATCACAGTACACATCTACTTCTGTATCTCCG
CCCCTTTGCCGGCCACGTTTCTCTGATGAACCCGTTAGTGCGCGACCTCT
GCAAGAGGTTCGTGCTCGTCGCCCGGCGTCACCCTTCCGGAGAGCGATAT
GTCAAAGAAAGGGCGATGGCAGCGCTCAGGAGAAATGCAGGACTCACGGA
CGAAGTAGAAATCAAACGAGCAGTAGTACAAGGAAGACGAGCAGCAAGAG
AAGCTGAGGATTTCGCCAAGTTCTGTAAATACCGAGTTTTGCGAAAGAGG
TACGTCGCTCCAGCAGCGGCGGCGGCTGATGACTGAATGATGAACAAAAC
AAATTATCACAGTACACATCTACTTCTGTATCTCCGCCCCTTTGCCGGCC
ACGTTTCTCTGATGAACCCGTTAGTGCGCGACCTCTGCAAGAGGTTCGTG
CTCGTCGCCCGGCGTCACCCTTCCGGAGAGCGATATGTCAAAGAAAGGGC
GATGGCAGCGCTCAGGAGAAATGCAGGACTCACGGACGAAGTAGAAATCA
AACGAGCAGTAGTACAAGGAAGACGAGCAGCAAGAGAAGCTGAGGATTTC
GCCAAGTTCTGTAAATACCGAGTTTTGCGAAAGAGGTACGTCGCTCCAGC
AGCGGCGGCGGCTGATGACTGA
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