mRNA_H-paniculata_contig12137.1356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 216 bits (550), Expect = 4.730e-60 Identity = 121/292 (41.44%), Postives = 166/292 (56.85%), Query Frame = 1 Query: 16 DTKLLHERLGHI--RDLPTVARQQGIRSSEKLG----VCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDEEDF 870 D+ L H R GH+ L +++ ++ ++ +C C KGK +Q K R LE+VHTDIAG S GG R+ + F+DD++R +Y L++KS AL LK+F+ + +G +K LRSD+GGEYT K +FC E+GI + +A YTP QNGVAER R I +MAR+ + + R FWAEAVR A+Y LNR PT+ TP E W + H +F C AY R KLDD+ +F+GYDE S +YR YN K + +SR V FDE D+ Sbjct: 327 DSWLWHLRYGHLGFSGLKLLSKTSMVKGLPEINPPNQLCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 215 bits (548), Expect = 9.490e-60 Identity = 115/288 (39.93%), Postives = 173/288 (60.07%), Query Frame = 1 Query: 25 LLHERLGHIRD--LPTVARQQGIRSSEKL------GVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVGK-SFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861 L H+RLGH+ + ++ ++ + +L G+C +C +GK +++ + K + L+LVHTDI G + S G R+ I F+DDY+R + L +KS AL A K+F+ R GL + LRSD+GGEY + +C ENGI ++ +AAYTP QNG+AER R+I MAR M+ ++ RRFW EAV+ A++ LNR+P+ TP E+W + +H+ VF C AY + ++R KLD+K+ VF+G ++S +YR YN E K + +SR VRFDE Sbjct: 437 LWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA) HSP 1 Score: 213 bits (541), Expect = 8.360e-59 Identity = 119/292 (40.75%), Postives = 166/292 (56.85%), Query Frame = 1 Query: 16 DTKLLHERLGHI--RDLPTVARQQGIRSSEKLG----VCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDEEDF 870 D+ L H R GH+ L +A++ + K+ +C C KGK +Q + + +PLE+VH+D+AG S GG R+ + F+DD++R VY L++KS L K+F+ V + +G +K LRSD+GGEYT F E+GI + + YTP QNGVAER R I ++AR+ + ++ R FWAEAVR A+Y LNR PT+ TP E W + HL +F C AY Q R KLDD+ +F+GYDE S +YR YN K V +SR V FDE D+ Sbjct: 780 DSWLWHLRYGHLGFSGLKLLAKENMVNGLPKINPPDHLCEACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 197 bits (502), Expect = 6.150e-58 Identity = 121/303 (39.93%), Postives = 164/303 (54.13%), Query Frame = 1 Query: 10 VVDTKLLHERLGH-----IRDLPTVARQQGIRSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVA------RANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGG-TPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQL---SRHVRFDEEDF 870 V +L H+R GH +R + + + +K GVC CE+ K +K+ E EPLELVHTD+ G V +S GG R+AI F DDY R R VY ++ KS +L LK++ +D+ + N LR LRSD GGEYTG + FC +GI Q+F Y P NG+AE+SW + MARA I A +G+ FWAEA+ +A Y NR+ G TPY K + HL F C A+V S +R K DD+A G+ +GYD+ + + Y + S+ S HV FDEE F Sbjct: 18 VYSPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAFVHDTSVRRGKFDDRAVEGILIGYDDIGNNPKCYRIYIPSLGRYIRSGHVTFDEETF 318
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF) HSP 1 Score: 208 bits (530), Expect = 7.850e-58 Identity = 117/289 (40.48%), Postives = 159/289 (55.02%), Query Frame = 1 Query: 19 TKLLHERLGHIRDLPTVARQQ-----GIRSSEKLG-VCSVCEKGKASKQPVKKYREEWTTE-PLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861 + L H R GH+ D + ++ G+ S E G VC C GK K P K W + PLELVH+DI G + + G R+ I+F+DDY RM +Y L QKS A QF+ R +G IK LR+D+GGEY P ++C NGI ++ + +YTP QNGVAER R I EMAR + + +WAEAV +A Y +NR+PT+ + TPYE WH + DH +F AY + SQ+R K D K +F+GY +S YR + + +SR V FDE Sbjct: 447 SSLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPK--TSWQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTLKIIVSRDVIFDE 733
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF) HSP 1 Score: 209 bits (532), Expect = 1.320e-57 Identity = 117/289 (40.48%), Postives = 160/289 (55.36%), Query Frame = 1 Query: 19 TKLLHERLGHIRDLPTVARQQ-----GIRSSEKLG-VCSVCEKGKASKQPVKKYREEWTTE-PLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861 + L H R GH+ D + ++ G+ S E G VC C GK K P K W + PLELVH+DI G + + G R+ I+F+DDY RM +Y L QKS A QF+ R +G IK LR+D+GGEY P ++C NGI ++ + +YTP QNGVAER R I EMAR+ + + +WAEAV +A Y +NR+PT+ + TPYE WH + DH +F AY + SQ+R K D K +F+GY +S YR + + +SR V FDE Sbjct: 417 SSLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPK--TSWQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTFKIIVSRDVIFDE 703
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A4Y1R579_PRUDU (Uncharacterized protein (Fragment) n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R579_PRUDU) HSP 1 Score: 209 bits (531), Expect = 1.790e-57 Identity = 117/286 (40.91%), Postives = 163/286 (56.99%), Query Frame = 1 Query: 25 LLHERLGHI-----RDLPTVARQQGI-RSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861 L H R GH+ R L QG+ + E CS C GK+ + K ++PLEL+H+DI G + + GG R+ + F+DD+ RM V+ L+QKS A K+F+ V +G +IK LRSD+GGEYT +FC E G+ ++ + AY+P QNGVAER R + EMAR M + +FWAEAV +A+Y NR+PT + TP+EK+ HL +F Y+ SQ+RHKL++ GVFLGY YR +NLE K ++LSR + FDE Sbjct: 553 LWHRRFGHLNYCSLRLLQEKDMVQGLPKLQESEKTCSGCAIGKSHRSSFDKEITWRASQPLELIHSDICGPMQSITLGGNRYFLTFIDDHTRMCWVFFLQQKSHAFNIFKRFKNMVELQSGYQIKKLRSDRGGEYTSLEFSKFCEEMGLERQLTIAYSPQQNGVAERKNRTVMEMARTMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNTTPFEKFSGRKPGVKHLRIFGSLCYIHIPSQKRHKLEETGMKGVFLGYGICEKGYRVFNLETKKIELSRSIIFDE 838
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A4Y1R550_PRUDU (Uncharacterized protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R550_PRUDU) HSP 1 Score: 209 bits (531), Expect = 1.880e-57 Identity = 117/286 (40.91%), Postives = 163/286 (56.99%), Query Frame = 1 Query: 25 LLHERLGHI-----RDLPTVARQQGI-RSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861 L H R GH+ R L QG+ + E CS C GK+ + K ++PLEL+H+DI G + + GG R+ + F+DD+ RM V+ L+QKS A K+F+ V +G +IK LRSD+GGEYT +FC E G+ ++ + AY+P QNGVAER R + EMAR M + +FWAEAV +A+Y NR+PT + TP+EK+ HL +F Y+ SQ+RHKL++ GVFLGY YR +NLE K ++LSR + FDE Sbjct: 690 LWHRRFGHLNYCSLRLLQEKDMVQGLPKLQESEKTCSGCAIGKSHRSSFDKEITWRASQPLELIHSDICGPMQSITLGGNRYFLTFIDDHTRMCWVFFLQQKSHAFNIFKRFKNMVELQSGYQIKKLRSDRGGEYTSLEFSKFCEEMGLERQLTIAYSPQQNGVAERKNRTVMEMARTMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNTTPFEKFSGRKPGVKHLRIFGSLCYIHIPSQKRHKLEETGMKGVFLGYGICEKGYRVFNLETKKIELSRSIIFDE 975
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A4Y1R1B7_PRUDU (BURP domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R1B7_PRUDU) HSP 1 Score: 206 bits (524), Expect = 2.310e-57 Identity = 110/260 (42.31%), Postives = 155/260 (59.62%), Query Frame = 1 Query: 85 IRSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861 ++ SEK CS C GK+ + K ++PLEL+H+DI G + + GG R+ + F+DD+ RM V+ L+QKS A K+F+ V +G +IK LRSD+GGEYT +FC E G+ ++ + AY+P QNGVAER R + EMAR M + +FWAEAV +A+Y NR+PT + TP+EK+ HL +F Y+ SQ+RHKL++ GVFLGY YR +NLE K ++LSR + FDE Sbjct: 37 LQESEKT--CSGCAIGKSHRSSFDKEITWRASQPLELIHSDICGPMQSITLGGNRYFLTFIDDHTRMCWVFFLQQKSHAFNIFKRFKNMVELQSGYQIKKLRSDRGGEYTSLEFSKFCEEMGLERQLTIAYSPQQNGVAERKNRTVMEMARTMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNTTPFEKFSGRKPGVKHLRIFGSLCYIHIPSQKRHKLEETGMKGVFLGYGICEKGYRVFNLETKKIELSRSIIFDE 294
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 203 bits (516), Expect = 2.350e-57 Identity = 122/299 (40.80%), Postives = 165/299 (55.18%), Query Frame = 1 Query: 22 KLLHERLGH-----IRDLPTVARQQGIRSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVA------RANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGG-TPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQL---SRHVRFDEEDF 870 +L H+R GH +R + + + +K GVC CE+ K +K+ E EPLELVHTD+ G V +S GG R+AI F DDY R R VY ++ KS +L LK++ +D+ + N LR LRSD GGEYTG + FC +GI Q+F Y P NGVAE+SW + MAR+ I A +G+RFWAEA+ +A Y LNR+ T G TPY K + H F C A+V S +R K DD+A G+ +GYD+ + + Y + S+ S HV FDEE F Sbjct: 22 ELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAFVHDTSVRRGKFDDRAVEGIMIGYDDIGNNPKCYRIYIPSIGKYIKSGHVTFDEETF 318 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12137.1356.1 >prot_H-paniculata_contig12137.1356.1 ID=prot_H-paniculata_contig12137.1356.1|Name=mRNA_H-paniculata_contig12137.1356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKback to top mRNA from alignment at H-paniculata_contig12137:496..1365- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12137.1356.1 ID=mRNA_H-paniculata_contig12137.1356.1|Name=mRNA_H-paniculata_contig12137.1356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at H-paniculata_contig12137:496..1365- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12137:496..1365- >mRNA_H-paniculata_contig12137.1356.1 ID=mRNA_H-paniculata_contig12137.1356.1|Name=mRNA_H-paniculata_contig12137.1356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig12137:496..1365- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |