mRNA_H-paniculata_contig12137.1356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12137.1356.1
Unique NamemRNA_H-paniculata_contig12137.1356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 216 bits (550), Expect = 4.730e-60
Identity = 121/292 (41.44%), Postives = 166/292 (56.85%), Query Frame = 1
Query:   16 DTKLLHERLGHI--RDLPTVARQQGIRSSEKLG----VCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDEEDF 870
            D+ L H R GH+    L  +++   ++   ++     +C  C KGK  +Q  K  R       LE+VHTDIAG     S GG R+ + F+DD++R   +Y L++KS AL  LK+F+    + +G  +K LRSD+GGEYT K   +FC E+GI  + +A YTP QNGVAER  R I +MAR+ +    + R FWAEAVR A+Y LNR PT+     TP E W  +     H  +F C AY       R KLDD+    +F+GYDE S +YR YN   K + +SR V FDE D+
Sbjct:  327 DSWLWHLRYGHLGFSGLKLLSKTSMVKGLPEINPPNQLCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 215 bits (548), Expect = 9.490e-60
Identity = 115/288 (39.93%), Postives = 173/288 (60.07%), Query Frame = 1
Query:   25 LLHERLGHIRD--LPTVARQQGIRSSEKL------GVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVGK-SFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861
            L H+RLGH+    + ++  ++ +    +L      G+C +C +GK +++ + K      +  L+LVHTDI G +   S  G R+ I F+DDY+R    + L +KS AL A K+F+    R  GL +  LRSD+GGEY     + +C ENGI ++ +AAYTP QNG+AER  R+I  MAR  M+  ++ RRFW EAV+ A++ LNR+P+      TP E+W +     +H+ VF C AY +   ++R KLD+K+   VF+G  ++S +YR YN E K + +SR VRFDE
Sbjct:  437 LWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 213 bits (541), Expect = 8.360e-59
Identity = 119/292 (40.75%), Postives = 166/292 (56.85%), Query Frame = 1
Query:   16 DTKLLHERLGHI--RDLPTVARQQGIRSSEKLG----VCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDEEDF 870
            D+ L H R GH+    L  +A++  +    K+     +C  C KGK  +Q  +  +     +PLE+VH+D+AG     S GG R+ + F+DD++R   VY L++KS  L   K+F+  V + +G  +K LRSD+GGEYT      F  E+GI  + +  YTP QNGVAER  R I ++AR+ +   ++ R FWAEAVR A+Y LNR PT+     TP E W  +     HL +F C AY     Q R KLDD+    +F+GYDE S +YR YN   K V +SR V FDE D+
Sbjct:  780 DSWLWHLRYGHLGFSGLKLLAKENMVNGLPKINPPDHLCEACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.150e-58
Identity = 121/303 (39.93%), Postives = 164/303 (54.13%), Query Frame = 1
Query:   10 VVDTKLLHERLGH-----IRDLPTVARQQGIRSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVA------RANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGG-TPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQL---SRHVRFDEEDF 870
            V   +L H+R GH     +R +  +      +  +K GVC  CE+ K +K+       E   EPLELVHTD+ G V  +S GG R+AI F DDY R R VY ++ KS +L  LK++ +D+       + N LR   LRSD GGEYTG   + FC  +GI Q+F   Y P  NG+AE+SW  +  MARA  I A +G+ FWAEA+ +A Y  NR+       G TPY K   +     HL  F C A+V   S +R K DD+A  G+ +GYD+   + + Y +   S+     S HV FDEE F
Sbjct:   18 VYSPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAFVHDTSVRRGKFDDRAVEGILIGYDDIGNNPKCYRIYIPSLGRYIRSGHVTFDEETF 318          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF)

HSP 1 Score: 208 bits (530), Expect = 7.850e-58
Identity = 117/289 (40.48%), Postives = 159/289 (55.02%), Query Frame = 1
Query:   19 TKLLHERLGHIRDLPTVARQQ-----GIRSSEKLG-VCSVCEKGKASKQPVKKYREEWTTE-PLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861
            + L H R GH+ D   +  ++     G+ S E  G VC  C  GK  K P  K    W  + PLELVH+DI G +   + G  R+ I+F+DDY RM  +Y L QKS A     QF+    R +G  IK LR+D+GGEY   P  ++C  NGI ++ + +YTP QNGVAER  R I EMAR  +    +   +WAEAV +A Y +NR+PT+  +  TPYE WH +    DH  +F   AY +  SQ+R K D K    +F+GY  +S  YR  +     + +SR V FDE
Sbjct:  447 SSLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPK--TSWQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTLKIIVSRDVIFDE 733          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF)

HSP 1 Score: 209 bits (532), Expect = 1.320e-57
Identity = 117/289 (40.48%), Postives = 160/289 (55.36%), Query Frame = 1
Query:   19 TKLLHERLGHIRDLPTVARQQ-----GIRSSEKLG-VCSVCEKGKASKQPVKKYREEWTTE-PLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861
            + L H R GH+ D   +  ++     G+ S E  G VC  C  GK  K P  K    W  + PLELVH+DI G +   + G  R+ I+F+DDY RM  +Y L QKS A     QF+    R +G  IK LR+D+GGEY   P  ++C  NGI ++ + +YTP QNGVAER  R I EMAR+ +    +   +WAEAV +A Y +NR+PT+  +  TPYE WH +    DH  +F   AY +  SQ+R K D K    +F+GY  +S  YR  +     + +SR V FDE
Sbjct:  417 SSLWHLRYGHLHDRALILLKEKNMVIGLPSIEPSGKVCEGCVYGKMHKLPFPK--TSWQAKSPLELVHSDICGPMQTPTPGRKRYFILFIDDYTRMMWIYFLNQKSEAFSTFMQFKAQAERESGFLIKSLRTDRGGEYLSNPFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDPSTFKIIVSRDVIFDE 703          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A4Y1R579_PRUDU (Uncharacterized protein (Fragment) n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R579_PRUDU)

HSP 1 Score: 209 bits (531), Expect = 1.790e-57
Identity = 117/286 (40.91%), Postives = 163/286 (56.99%), Query Frame = 1
Query:   25 LLHERLGHI-----RDLPTVARQQGI-RSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861
            L H R GH+     R L      QG+ +  E    CS C  GK+ +    K      ++PLEL+H+DI G +   + GG R+ + F+DD+ RM  V+ L+QKS A    K+F+  V   +G +IK LRSD+GGEYT     +FC E G+ ++ + AY+P QNGVAER  R + EMAR  M    +  +FWAEAV +A+Y  NR+PT   +  TP+EK+        HL +F    Y+   SQ+RHKL++    GVFLGY      YR +NLE K ++LSR + FDE
Sbjct:  553 LWHRRFGHLNYCSLRLLQEKDMVQGLPKLQESEKTCSGCAIGKSHRSSFDKEITWRASQPLELIHSDICGPMQSITLGGNRYFLTFIDDHTRMCWVFFLQQKSHAFNIFKRFKNMVELQSGYQIKKLRSDRGGEYTSLEFSKFCEEMGLERQLTIAYSPQQNGVAERKNRTVMEMARTMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNTTPFEKFSGRKPGVKHLRIFGSLCYIHIPSQKRHKLEETGMKGVFLGYGICEKGYRVFNLETKKIELSRSIIFDE 838          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A4Y1R550_PRUDU (Uncharacterized protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R550_PRUDU)

HSP 1 Score: 209 bits (531), Expect = 1.880e-57
Identity = 117/286 (40.91%), Postives = 163/286 (56.99%), Query Frame = 1
Query:   25 LLHERLGHI-----RDLPTVARQQGI-RSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861
            L H R GH+     R L      QG+ +  E    CS C  GK+ +    K      ++PLEL+H+DI G +   + GG R+ + F+DD+ RM  V+ L+QKS A    K+F+  V   +G +IK LRSD+GGEYT     +FC E G+ ++ + AY+P QNGVAER  R + EMAR  M    +  +FWAEAV +A+Y  NR+PT   +  TP+EK+        HL +F    Y+   SQ+RHKL++    GVFLGY      YR +NLE K ++LSR + FDE
Sbjct:  690 LWHRRFGHLNYCSLRLLQEKDMVQGLPKLQESEKTCSGCAIGKSHRSSFDKEITWRASQPLELIHSDICGPMQSITLGGNRYFLTFIDDHTRMCWVFFLQQKSHAFNIFKRFKNMVELQSGYQIKKLRSDRGGEYTSLEFSKFCEEMGLERQLTIAYSPQQNGVAERKNRTVMEMARTMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNTTPFEKFSGRKPGVKHLRIFGSLCYIHIPSQKRHKLEETGMKGVFLGYGICEKGYRVFNLETKKIELSRSIIFDE 975          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: A0A4Y1R1B7_PRUDU (BURP domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R1B7_PRUDU)

HSP 1 Score: 206 bits (524), Expect = 2.310e-57
Identity = 110/260 (42.31%), Postives = 155/260 (59.62%), Query Frame = 1
Query:   85 IRSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAG-LVGKSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVARANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQLSRHVRFDE 861
            ++ SEK   CS C  GK+ +    K      ++PLEL+H+DI G +   + GG R+ + F+DD+ RM  V+ L+QKS A    K+F+  V   +G +IK LRSD+GGEYT     +FC E G+ ++ + AY+P QNGVAER  R + EMAR  M    +  +FWAEAV +A+Y  NR+PT   +  TP+EK+        HL +F    Y+   SQ+RHKL++    GVFLGY      YR +NLE K ++LSR + FDE
Sbjct:   37 LQESEKT--CSGCAIGKSHRSSFDKEITWRASQPLELIHSDICGPMQSITLGGNRYFLTFIDDHTRMCWVFFLQQKSHAFNIFKRFKNMVELQSGYQIKKLRSDRGGEYTSLEFSKFCEEMGLERQLTIAYSPQQNGVAERKNRTVMEMARTMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNTTPFEKFSGRKPGVKHLRIFGSLCYIHIPSQKRHKLEETGMKGVFLGYGICEKGYRVFNLETKKIELSRSIIFDE 294          
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.350e-57
Identity = 122/299 (40.80%), Postives = 165/299 (55.18%), Query Frame = 1
Query:   22 KLLHERLGH-----IRDLPTVARQQGIRSSEKLGVCSVCEKGKASKQPVKKYREEWTTEPLELVHTDIAGLVG-KSFGGCRFAIIFVDDYNRMRKVYTLRQKS*ALWALKQFERDVA------RANGLRIKHLRSDQGGEYTGKPLRQFCAENGINQEFSAAYTP*QNGVAERSWRNIFEMARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGG-TPYEKWHDETLKFDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENKSVQL---SRHVRFDEEDF 870
            +L H+R GH     +R +  +      +  +K GVC  CE+ K +K+       E   EPLELVHTD+ G V  +S GG R+AI F DDY R R VY ++ KS +L  LK++ +D+       + N LR   LRSD GGEYTG   + FC  +GI Q+F   Y P  NGVAE+SW  +  MAR+  I A +G+RFWAEA+ +A Y LNR+ T     G TPY K   +     H   F C A+V   S +R K DD+A  G+ +GYD+   + + Y +   S+     S HV FDEE F
Sbjct:   22 ELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAFVHDTSVRRGKFDDRAVEGIMIGYDDIGNNPKCYRIYIPSIGKYIKSGHVTFDEETF 318          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12137.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WSU7_HIBSY4.730e-6041.44Integrase catalytic domain-containing protein n=2 ... [more]
A0A6D2IM54_9BRAS9.490e-6039.93Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A2G2VUS6_CAPBA8.360e-5940.75Integrase catalytic domain-containing protein n=1 ... [more]
W7TGQ6_9STRA6.150e-5839.93Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
A0A8J5GP83_ZINOF7.850e-5840.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5F3N7_ZINOF1.320e-5740.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1R579_PRUDU1.790e-5740.91Uncharacterized protein (Fragment) n=3 Tax=Prunus ... [more]
A0A4Y1R550_PRUDU1.880e-5740.91Uncharacterized protein n=4 Tax=Prunus dulcis TaxI... [more]
A0A4Y1R1B7_PRUDU2.310e-5742.31BURP domain-containing protein (Fragment) n=1 Tax=... [more]
W7TIQ5_9STRA2.350e-5740.80Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12137contigH-paniculata_contig12137:496..1365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.3
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size870
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.4738371-CDS-H-paniculata_contig12137:495..8401622928933.4738371-CDS-H-paniculata_contig12137:495..840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12137 496..840 -
1691480672.6053178-CDS-H-paniculata_contig12137:495..8401691480672.6053178-CDS-H-paniculata_contig12137:495..840Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12137 496..840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928933.4862027-UTR-H-paniculata_contig12137:840..13651622928933.4862027-UTR-H-paniculata_contig12137:840..1365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12137 841..1365 -
1691480672.6248405-UTR-H-paniculata_contig12137:840..13651691480672.6248405-UTR-H-paniculata_contig12137:840..1365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12137 841..1365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12137.1356.1prot_H-paniculata_contig12137.1356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12137 496..840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12137.1356.1

>prot_H-paniculata_contig12137.1356.1 ID=prot_H-paniculata_contig12137.1356.1|Name=mRNA_H-paniculata_contig12137.1356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MARANMITANMGRRFWAEAVRSALYYLNRAPTRPHNGGTPYEKWHDETLK
FDHLCVFSCTAYVVFQSQQRHKLDDKAWAGVFLGYDEDSPSYRTYNLENK
SVQLSRHVRFDEEDF
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mRNA from alignment at H-paniculata_contig12137:496..1365-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12137.1356.1 ID=mRNA_H-paniculata_contig12137.1356.1|Name=mRNA_H-paniculata_contig12137.1356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at H-paniculata_contig12137:496..1365- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAACGGGTAGTGGACACCAAATTACTACATGAGCGACTAGGGCATAT TCGAGACCTTCCCACAGTCGCGCGGCAACAAGGAATAAGGTCAAGCGAGA AGCTCGGTGTCTGCTCGGTGTGCGAGAAGGGGAAAGCGTCGAAACAGCCT GTGAAAAAGTATCGAGAAGAGTGGACGACCGAGCCGTTGGAGCTGGTGCA CACCGACATAGCCGGACTGGTGGGCAAGTCCTTCGGAGGATGCCGCTTCG CCATCATCTTCGTCGACGACTACAACAGAATGCGCAAAGTCTATACCTTG CGACAAAAGTCATAGGCGCTATGGGCCCTGAAGCAATTTGAGAGGGACGT AGCGAGGGCAAACGGTTTGCGGATTAAGCACCTTCGCTCCGATCAGGGAG GAGAATATACTGGGAAGCCTTTGAGGCAATTCTGTGCGGAAAATGGCATC AATCAGGAATTCTCTGCCGCCTACACGCCGTAACAAAACGGTGTGGCAGA GCGCAGCTGGCGCAACATTTTCGAGATGGCAAGAGCCAACATGATCACCG CCAACATGGGTCGTCGATTTTGGGCGGAAGCGGTGCGCTCGGCATTGTAC TACCTAAATCGCGCCCCAACGCGACCGCACAACGGAGGGACGCCGTACGA GAAATGGCACGACGAGACACTAAAGTTCGATCACCTCTGCGTCTTCAGCT GCACGGCGTATGTTGTGTTCCAGTCGCAGCAGAGACACAAGCTCGACGAC AAAGCATGGGCGGGGGTGTTTCTAGGGTACGACGAGGACAGCCCGAGTTA TCGCACATATAACCTGGAAAACAAGAGCGTCCAGTTGAGCAGGCACGTGA GATTTGACGAAGAGGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12137:496..1365-

>mRNA_H-paniculata_contig12137.1356.1 ID=mRNA_H-paniculata_contig12137.1356.1|Name=mRNA_H-paniculata_contig12137.1356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig12137:496..1365- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCCAACATGATCACCGCCAACATGGGTCGTCGATTTTGGGC
GGAAGCGGTGCGCTCGGCATTGTACTACCTAAATCGCGCCCCAACGCGAC
CGCACAACGGAGGGACGCCGTACGAGAAATGGCACGACGAGACACTAAAG
TTCGATCACCTCTGCGTCTTCAGCTGCACGGCGTATGTTGTGTTCCAGTC
GCAGCAGAGACACAAGCTCGACGACAAAGCATGGGCGGGGGTGTTTCTAG
GGTACGACGAGGACAGCCCGAGTTATCGCACATATAACCTGGAAAACAAG
AGCGTCCAGTTGAGCAGGCACGTGAGATTTGACGAAGAGGACTTCATGGC
AAGAGCCAACATGATCACCGCCAACATGGGTCGTCGATTTTGGGCGGAAG
CGGTGCGCTCGGCATTGTACTACCTAAATCGCGCCCCAACGCGACCGCAC
AACGGAGGGACGCCGTACGAGAAATGGCACGACGAGACACTAAAGTTCGA
TCACCTCTGCGTCTTCAGCTGCACGGCGTATGTTGTGTTCCAGTCGCAGC
AGAGACACAAGCTCGACGACAAAGCATGGGCGGGGGTGTTTCTAGGGTAC
GACGAGGACAGCCCGAGTTATCGCACATATAACCTGGAAAACAAGAGCGT
CCAGTTGAGCAGGCACGTGAGATTTGACGAAGAGGACTTC
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