mRNA_H-paniculata_contig12136.1355.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig12136.1355.1 vs. uniprot
Match: A0A6H5K102_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K102_9PHAE) HSP 1 Score: 320 bits (821), Expect = 1.250e-90 Identity = 416/870 (47.82%), Postives = 463/870 (53.22%), Query Frame = 1
Query: 4 VMESVNVEMDLRNFIRSARREVASDAAVAAKTAEAAEXXXXXXXXXXXFFAHSDGSPGIAVG-------------TGVLSNRADVRVAAQAFHRLFGVGPDLPPPPTEEPWSPAETEGEMPSSCGQSLLDLFQVPLMTKEDISRYLDAMDPVAGAAASEAAAAAIKALGATTLLAGGR-KASFDAQTDAAIAGLPSHYPMVTPASSVFEVLGFAAQVRHAESYAASEAANEILPKPGGREADADVAAAVAGSAVGAGMMVAPPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDKSTMGIVGSPVPAPPL-----------QVRSSASATAVSA---------------------FATLAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSPCLALAAERPSVFAATLADDVLEALGAEGAAAAG-------------------------GEEEDAG----VVVAHAVEALLRDGGEGQGVKGCEVDAAEKACADSSVSSQRLLLALCSLVCGEKNISGVNNSTSTGGTNNGNIIDHKQDEGGFSPILLSPRSFSALARLLRASLDQAAISREFLQARNCLVISALFAVGGAEYVSWLREAKTKGGSSGGKDGGDTL-------AVMADSELVSAAGALDRRQQQQ-----------PGGE---------AGYLLQRELRRHRVWATIELWEVTMSDSVVMALDGGGAKAERWLPADTRTAL 2307
+ME+VNVEMDLRNFIRSARREVASD+ XXXXXXXXXX A + + GVLS+RAD R AA A RLFGVG DLPPPPTEE W P E EGE P++C Q+L++LF PL+TKEDIS YLDA DPVAGAAASEAAAAAIKALGA TL G R A+ DA+ DAA+A L SHYP+VTPA+SV+EVLGFAAQ RHA++Y A GG D + G P+ XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX P A P + S AV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + SPCLALA+ RPSVFAATLADDVLE+L AEGA A G +D G VA AVEALL G + +K EVDAA +AC+ S SS RLLLALC C + ++ T GF+P+ L P SF+ALARLLRASLDQAA REFLQARNCLV + LFAV G +Y+SWLRE + GS GK G AVMA+SELVSAAG LD P GE AGYLL RELRRH VWA IELWEV+MSDSVVMA++GGG +AERWL DT A+
Sbjct: 330 LMEAVNVEMDLRNFIRSARREVASDSVAXXXXXXXXXXXXXXXXXXXAVSASGFAASPVEAAHGLXXXXXXXXXXXGVLSSRADRRGAALAIQRLFGVGQDLPPPPTEEAWVPPEVEGETPAACRQTLVELFHAPLITKEDISMYLDATDPVAGAAASEAAAAAIKALGAPTLAGGARGSAAQDAKMDAALAKLSSHYPVVTPAASVYEVLGFAAQARHAKNYKDLLAGASDAGVDGGGVGGVDGGSGNGEIVDAEGRASQRPLPCTGACAPASEQRGGAADGANAPEGSSGSNVAGSSSGNGENTXXXXXXXXXXXXXXXXXXXXXXSSGANAEKATPSPDGVVNDKPMSSSSRREGLDGSVIGGVAAAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAATLAAATPXXXXXXXXXXXXXXXXXPTAATPAPXPXXXXXXXXEEDSQPPPAAVDPQGEDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEVAVTVSPCLALASRRPSVFAATLADDVLESLRAEGAGATDRRRSXXXXXXXXXXXXXXXXXXEGPGVGDDRGGDPATAVARAVEALLT-GXXXRTMKAEEVDAAAEACSRSPSSSNRLLLALCQHACPSTTTTASGDNQGPSATTGSGSTXXGSGPRGFAPVRLQPASFAALARLLRASLDQAASDREFLQARNCLVTAGLFAVEGDDYLSWLRE---QHGSQQGKSGXXXXXXXXXIPAVMANSELVSAAGKLDEVSALSSSAAAAPAADVPSGEGAGEAEEEAAGYLLLRELRRHPVWAAIELWEVSMSDSVVMAMEGGGERAERWLTRDTLDAM 1195
BLAST of mRNA_H-paniculata_contig12136.1355.1 vs. uniprot
Match: D8LEI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI7_ECTSI) HSP 1 Score: 240 bits (612), Expect = 2.340e-63 Identity = 318/818 (38.88%), Postives = 358/818 (43.77%), Query Frame = 1
Query: 1 KVMESVNVEMDLRNFIRSARREVASDAAVAAKTAEAAEXXXXXXXXXXXFFAHSDGSPGIAVGT----------------GVLSNRADVRVAAQAFHRLFGVGPDLPPPPTEEPWSPAETEGEMPSSCGQSLLDLFQVPLMTKEDISRYLDAMDPVAGAAASEAAAAAIKALGATTLLAGGR-KASFDAQTDAAIAGLPSHYPMVTPASSVFEVLGFAAQVRHAESY-----AASEAANEILPKPGGREADADVAAAVAGSAVGAGMMVAPPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDKSTMGIVGSPVPAPPLQVRSSASATAVSAFATLAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSPCLALAAERPSVFAATLADDVLEALGAEGAAAAGGEEEDAGVVVAHAVEALLRDGGEGQGVKGCEVDAAEKACADSSVSSQRLLLALCSLVCGEKNISGVNNSTSTGGTNNGNIIDHKQDEGGFSPILLSPRSFSALARLLRASLDQAAISREFLQARNCLVISALFAVGGAEYVSWLREAKTKGGSSGGKDGGDTLA-----VMADSELVSAAGALDRRQQQQ-------------PGGE---------AGYLLQRELRRHRVWATIELWEVTMSDSVVMALDGGGAKAERWLPADTRTAL 2307
K+ME+VNVEMDLRNFIRSARREVASD+ XXXXXXXXXXX + GS V GVLS+RAD R AA A RLFGVG DLPPPPTEE W P E EGE P++C Q+L++LF PL+TKEDIS YLDA DPVAGAAASEAAAAAIKALGA TL G R A+ DA+ DAA+A L SHYP+VTPA+SV+EVLGFAAQ RHA++Y AS+A DA+ G + PP+ XXXXXXXXXXXXXXXXXXX S A A AT + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +K +VDAA +AC+ ++ T +P+ L P SF ALARLLRASLDQAA REFLQARNCLV + LFAV G YVSWLRE + GS GK G VMAD+ELVSAA L PGGE AGYLL RELRRH VWA IELWEV+MSDSVVMA++GGGA+AERWL DT A+
Sbjct: 333 KLMEAVNVEMDLRNFIRSARREVASDSVAXXXXXXXXXXXXXXXXXXXXXXXSAPGSATSLVEAANGVGXXXXXXXXXXXGVLSSRADRRGAALALQRLFGVGQDLPPPPTEEEWVPPEVEGETPAACRQTLVELFHAPLITKEDISMYLDATDPVAGAAASEAAAAAIKALGAPTLAGGARGAAAMDAKMDAALAKLSSHYPVVTPAASVYEVLGFAAQARHAKNYKDLLAGASDAGLGXXXXXXXXXGDAE------------GRVSQPPIPCPDAGAGXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------SLRADGAGATERRGSELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT------------------------------------------------MKADQVDAAAEACSXXXXXXXXXXXXXXQHXXXXXXXXASGDNQGPSATTGSGSXXXXXXXXXXAPVRLQPASFVALARLLRASLDQAASDREFLQARNCLVTAGLFAVDGGNYVSWLRE---QDGSQQGKSGXXXXXXXXXXVMADNELVSAARKLXXXXXXXXXXXXXXXPAADVPGGEGAGDADEEAAGYLLLRELRRHPVWAAIELWEVSMSDSVVMAMEGGGARAERWLTRDTLDAM 924 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12136.1355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12136.1355.1 >prot_H-paniculata_contig12136.1355.1 ID=prot_H-paniculata_contig12136.1355.1|Name=mRNA_H-paniculata_contig12136.1355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=767bp MESVNVEMDLRNFIRSARREVASDAAVAAKTAEAAEREAAEGGGGGGFFAback to top mRNA from alignment at H-paniculata_contig12136:76..6577+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12136.1355.1 ID=mRNA_H-paniculata_contig12136.1355.1|Name=mRNA_H-paniculata_contig12136.1355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6502bp|location=Sequence derived from alignment at H-paniculata_contig12136:76..6577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12136:76..6577+ >mRNA_H-paniculata_contig12136.1355.1 ID=mRNA_H-paniculata_contig12136.1355.1|Name=mRNA_H-paniculata_contig12136.1355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4602bp|location=Sequence derived from alignment at H-paniculata_contig12136:76..6577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |