mRNA_H-paniculata_contig5907.13533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5907.13533.1
Unique NamemRNA_H-paniculata_contig5907.13533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.270e-19
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 3 
Query:  507 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDV 656
            +VSCR+CLSDYE G+TLRILPCLHKFH+ CIDEWLGRS LCPLCNTSV+V
Sbjct:  923 KVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEV 972
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-18
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 3 
Query:  507 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVD 653
            +VSCR+CLS+Y++G  LR+LPC HKFH+GCIDEWL RS  CPLCNTSVD
Sbjct:  137 KVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVD 185
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A4D9D6F5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.770e-14
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:  510 VSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDVVYNNP 671
            VSCRICL DY EG+ LR+LPC H+FH  C  +WL R   CPLC T +DV+   P
Sbjct:  128 VSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRKKTCPLCTTCIDVIMRRP 181
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A835ZD21_9STRA (FAD dependent oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD21_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.040e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  507 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWL-GRSPLCPLCNTSVDVV 659
            ++SCR+CL +YE G+ LRILPCLH++H  C+DEWL  RSP CPLCNTSV VV
Sbjct:  267 KISCRVCLCEYEAGDELRILPCLHRYHVHCVDEWLVKRSPACPLCNTSVAVV 318
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: W7U3U3_9STRA (Ring u-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3U3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.200e-13
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:  510 VSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDVVYNNP 671
            VSCRICL DY EG+ LR+LPC H+FH  C  +WL R   CPLC T +DV+   P
Sbjct:  280 VSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRP 333
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A7J7PSY4_9CHLO (RING-type domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSY4_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 5.380e-13
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:  507 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSV 650
            ++SC +CL ++ EG  LR LPCLHKFH+GCID WLG+   CP+CN  V
Sbjct:   70 KLSCAVCLEEFVEGAELRALPCLHKFHKGCIDRWLGQKACCPVCNREV 117
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A7S2QJ38_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJ38_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-12
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:  516 CRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDVVYNNPLYSDT 686
            C +C+  YE G++LR LPCLH +HQ CIDEWL RSP CP+C  ++  V   PL + T
Sbjct:  112 CMVCMEAYEAGDSLRTLPCLHVYHQSCIDEWLARSPECPVCKRNITAVELPPLTAPT 168
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A2L2Y4S9_PARTP (RING finger protein 38 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Y4S9_PARTP)

HSP 1 Score: 71.2 bits (173), Expect = 3.690e-12
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 3 
Query:  516 CRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDV 656
            C++CLSDYE G+TLRILPC H+FH  CID WL  +  CP+C   VD+
Sbjct:   57 CQVCLSDYENGDTLRILPCFHEFHTPCIDPWLKINHTCPVCRVVVDL 103
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BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: UPI001C0A3BB0 (E3 ubiquitin-protein ligase RLIM-like n=2 Tax=Alosa TaxID=34772 RepID=UPI001C0A3BB0)

HSP 1 Score: 74.7 bits (182), Expect = 6.700e-12
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:  507 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSV 650
            Q  CRICLSDYEEG    ILPC H FH+ C+++WL +SP CP+C T +
Sbjct:  251 QSDCRICLSDYEEGEEFTILPCNHNFHRSCVNQWLQQSPTCPMCRTQI 298
[Close]
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A812UGP8_SYMPI (RNF43 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UGP8_SYMPI)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-11
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  516 CRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLC 638
            C ICL D+ EG  LRILPC H++HQGCIDEWLGRS  CPLC
Sbjct:  337 CCICLEDFVEGQQLRILPCFHRYHQGCIDEWLGRSDECPLC 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI9_9PHAE2.270e-1984.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2Y0A3_9STRA2.300e-1873.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D6F5_9STRA2.770e-1457.41RING-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A835ZD21_9STRA5.040e-1467.31FAD dependent oxidoreductase-domain-containing pro... [more]
W7U3U3_9STRA3.200e-1357.41Ring u-box domain-containing protein n=1 Tax=Nanno... [more]
A0A7J7PSY4_9CHLO5.380e-1358.33RING-type domain-containing protein n=1 Tax=Scened... [more]
A0A7S2QJ38_9DINO1.420e-1252.63Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2L2Y4S9_PARTP3.690e-1259.57RING finger protein 38 (Fragment) n=2 Tax=Parastea... [more]
UPI001C0A3BB06.700e-1258.33E3 ubiquitin-protein ligase RLIM-like n=2 Tax=Alos... [more]
A0A812UGP8_SYMPI1.170e-1173.17RNF43 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5907contigH-paniculata_contig5907:4899..7079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog296587.XP_002500032.1
KEGG koko:K19041,ko:K19045
Hectar predicted targeting categoryother localisation
EggNOG free text desc.isoform X1
EggNOG OGs37IKX@33090,KOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-28_001110.1
EC2.3.2.27
COG Functional cat.O
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size828
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5907.13533.1prot_H-paniculata_contig5907.13533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5907 4999..6621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.0444736-UTR-H-paniculata_contig5907:4898..49981622930647.0444736-UTR-H-paniculata_contig5907:4898..4998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5907 4899..4998 -
1691481387.9803684-UTR-H-paniculata_contig5907:4898..49981691481387.9803684-UTR-H-paniculata_contig5907:4898..4998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5907 4899..4998 -
1622930647.08669-UTR-H-paniculata_contig5907:6621..70791622930647.08669-UTR-H-paniculata_contig5907:6621..7079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5907 6622..7079 -
1691481388.0153923-UTR-H-paniculata_contig5907:6621..70791691481388.0153923-UTR-H-paniculata_contig5907:6621..7079Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5907 6622..7079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.056695-CDS-H-paniculata_contig5907:4998..51451622930647.056695-CDS-H-paniculata_contig5907:4998..5145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5907 4999..5145 -
1691481387.9927084-CDS-H-paniculata_contig5907:4998..51451691481387.9927084-CDS-H-paniculata_contig5907:4998..5145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5907 4999..5145 -
1622930647.071171-CDS-H-paniculata_contig5907:6498..66211622930647.071171-CDS-H-paniculata_contig5907:6498..6621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5907 6499..6621 -
1691481388.002717-CDS-H-paniculata_contig5907:6498..66211691481388.002717-CDS-H-paniculata_contig5907:6498..6621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5907 6499..6621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5907.13533.1

>prot_H-paniculata_contig5907.13533.1 ID=prot_H-paniculata_contig5907.13533.1|Name=mRNA_H-paniculata_contig5907.13533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MATHVCSTVARILRASQVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEW
LGRSPLCPLCNTSVDVVYNNPLYSDTSATVAATSTSNSL*
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mRNA from alignment at H-paniculata_contig5907:4899..7079-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5907.13533.1 ID=mRNA_H-paniculata_contig5907.13533.1|Name=mRNA_H-paniculata_contig5907.13533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2181bp|location=Sequence derived from alignment at H-paniculata_contig5907:4899..7079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTATCGTTGATGTTTTTGGCGCCGATGCACATCCCTAGTGATACCACTT
TTGCTGAATGTGCTAACGTAATGATAGTGATGATCTTGATCCTGATAACA
TATTGAATCATGCGCTTATGGTCGTTTCGGAACAGAAACACTTTCCCATT
ATTTCTCCAAGTGTTCTCGTGAGTGGGATTTATTCTATTTCCAACTTTAC
TCCTTCCATATCTTAATCAAGTTTGTCTATATATGAACAGCCGAAATGAA
ACAGATTGGGAAAGTTGCAAATTTTGATGCCACATGGACGACTGACATCG
AAAGTCCCACCTGTGGCAGGAGGCAGGGGTGAATGGCGCAGCCACGGGGC
GAGAAGCAAGACGACGGATACAGCGATGGTGCTGGTAACCAGGGCAGTAT
GCCAAGGCAGTGGGGCTGAGCAGCTCGGTATTGTCAATTGTTGTGGCTTA
CTTTTCGCATGGCCACCCATGTGTGTTCCACCGTCGCGCGTATTCTGCGT
GCTTCTCAGGTGAGCTGCCGGATATGTTTGAGCGACTACGAGGAGGGCAA
CACTCTTCGAATACTTCCTTGCCTCCACAAGGTGAGGACGACGAGGAAGG
GAACGGGGAAACGCGTTGTAGCACATATTATATATATATATGTATGTATT
GGAGGAAACCAAATGAAGTCCATTCGGTTGACATCTGATAGACGAACAAA
AATCAGATTTACCAGGATTTAGATTAACGGTTAGAAGTATGTAGTATATC
CGTAGTTACAAGAACTCGAATTTTCGTTCGTTGAACGTGTTCCTTACCTA
TTTCGGTTGTTTATTACAGTTACAGATGTAGCTCTCTCTCTCTCCCTCTC
TTTGTGTGTTTCGGTGGAACATGGGTGAAATAGCGAACACTGAACAGTGA
TTTTTATAGAGATTTTGTCCGTCGAGATTTTTTCCGTGTTTGGAAGAAGT
TAAGCCACTTTCGAAACCTCGTGCGGCAAATAGTCTCATTTTTTTTCAAA
ACATGGGCCAACAACGGACGACAGGCCGATCTGAGTTTGATGTTTTTCTT
CTCGAGATGGTGCCACCAAGATCGGAAGCTCGACGGCTGTGGTCCACATC
GCCTACTGAAAAACTTGTCATAGTCCACACCACTGCATGTCGGTACATTG
TGCGAAAAGGTTCACTCCAATGATCCCTCTGTGTGCTGTCCGAAAATAGT
GAAACTGTTTGCCCGCACGAGGTTTCGAAAGCGGCCTGTTTGGCCCCTGT
TCCATTTTCCCGAAAATCAACTTTCAAAAACAAATTTTTCGAACGCCCAT
AGGAAGCGGCCTTATGAATCCTTTTTGCCCCCGGATGCAGGTTCACAACG
AAAATGGCAAAATTTGATGACCAAATGTCGAGAGCTGCAGTCGATGTTAT
GGACAGAAGCATGCCAATCGGTTTTTGTGCCGTTGTGTACTGTCTGCCTG
AATAGCGGCAGCTTCGTATCCCTGTTCAATCAGGTCACAAACATGCGTAA
TTTTTTCCCTGTTTTGAAAGTGTTGAGGGGACTAACTAGACCGAGATTGG
TTGAGTTTTGACAGAGTAGATCTCCAGATCTAAGAGTGTTCAGAGGCTGC
GGTTGGAATCGTTGGAAAGCTGAAATCTGATACTGATATGGACTATTTTG
AAGTGCATTTCGATTTGTGTATCAGGATAGATTGCTTTTCGCTCTTTTTC
TAGATTTTCACATTTTTCGGTCGGGAAAATGTCTGTGGGAAAAATTATTG
AGGACACGATTGAAATGGGGTGTTGCAAAGGGGGAACCGTCGATCATCTT
ACCCATTTTATTCCATTATACATGCACATATTGTACGGTGATTATAGGGA
TAGTTACACCTCTGCGTCTGTTGTTTCTTTTCGCTTCCGGTCCGGTCCGG
TCCGGTCCGGTTCGGGTTGTTTGTGTGACTTCAGTTCCACCAGGGCTGCA
TCGACGAGTGGCTGGGACGAAGCCCTCTGTGTCCTCTGTGCAACACCTCG
GTGGACGTTGTGTACAATAACCCTTTGTACTCGGATACATCGGCGACGGT
AGCGGCAACATCAACTTCCAACAGCTTGTAAATTTCGTTTTTGTTGTGCG
AAAACCAGGCTTTGCCTTGGTGTGTTAATTGGTTGTTTTGTTGTATATGT
AGTTGGCCGGGGGGGGACTGGGCGGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5907:4899..7079-

>mRNA_H-paniculata_contig5907.13533.1 ID=mRNA_H-paniculata_contig5907.13533.1|Name=mRNA_H-paniculata_contig5907.13533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig5907:4899..7079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACCCATGTGTGTTCCACCGTCGCGCGTATTCTGCGTGCTTCTCA
GGTGAGCTGCCGGATATGTTTGAGCGACTACGAGGAGGGCAACACTCTTC
GAATACTTCCTTGCCTCCACAAGATGGCCACCCATGTGTGTTCCACCGTC
GCGCGTATTCTGCGTGCTTCTCAGGTGAGCTGCCGGATATGTTTGAGCGA
CTACGAGGAGGGCAACACTCTTCGAATACTTCCTTGCCTCCACAAGTTCC
ACCAGGGCTGCATCGACGAGTGGCTGGGACGAAGCCCTCTGTGTCCTCTG
TGCAACACCTCGGTGGACGTTGTGTACAATAACCCTTTGTACTCGGATAC
ATCGGCGACGGTAGCGGCAACATCAACTTCCAACAGCTTGTAATTCCACC
AGGGCTGCATCGACGAGTGGCTGGGACGAAGCCCTCTGTGTCCTCTGTGC
AACACCTCGGTGGACGTTGTGTACAATAACCCTTTGTACTCGGATACATC
GGCGACGGTAGCGGCAACATCAACTTCCAACAGCTTGTAA
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