prot_H-paniculata_contig5907.13533.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5907.13533.1
Unique Nameprot_H-paniculata_contig5907.13533.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length90
Homology
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.280e-22
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0
Query:   17 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDV 66
            +VSCR+CLSDYE G+TLRILPCLHKFH+ CIDEWLGRS LCPLCNTSV+V
Sbjct:  923 KVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEV 972          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-20
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 0
Query:   17 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVD 65
            +VSCR+CLS+Y++G  LR+LPC HKFH+GCIDEWL RS  CPLCNTSVD
Sbjct:  137 KVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVD 185          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A4D9D6F5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.920e-16
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   18 VSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDVVYNNP 71
            VSCRICL DY EG+ LR+LPC H+FH  C  +WL R   CPLC T +DV+   P
Sbjct:  128 VSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRKKTCPLCTTCIDVIMRRP 181          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A835ZD21_9STRA (FAD dependent oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD21_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.170e-16
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0
Query:   17 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWL-GRSPLCPLCNTSVDVV 67
            ++SCR+CL +YE G+ LRILPCLH++H  C+DEWL  RSP CPLCNTSV VV
Sbjct:  267 KISCRVCLCEYEAGDELRILPCLHRYHVHCVDEWLVKRSPACPLCNTSVAVV 318          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: W7U3U3_9STRA (Ring u-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3U3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.090e-15
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   18 VSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDVVYNNP 71
            VSCRICL DY EG+ LR+LPC H+FH  C  +WL R   CPLC T +DV+   P
Sbjct:  280 VSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLCTTCIDVIMRRP 333          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A7J7PSY4_9CHLO (RING-type domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSY4_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 4.810e-15
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
Query:   17 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSV 64
            ++SC +CL ++ EG  LR LPCLHKFH+GCID WLG+   CP+CN  V
Sbjct:   70 KLSCAVCLEEFVEGAELRALPCLHKFHKGCIDRWLGQKACCPVCNREV 117          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A7S2QJ38_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJ38_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 8.670e-15
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   20 CRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDVVYNNPLYSDT 76
            C +C+  YE G++LR LPCLH +HQ CIDEWL RSP CP+C  ++  V   PL + T
Sbjct:  112 CMVCMEAYEAGDSLRTLPCLHVYHQSCIDEWLARSPECPVCKRNITAVELPPLTAPT 168          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A2L2Y4S9_PARTP (RING finger protein 38 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Y4S9_PARTP)

HSP 1 Score: 71.2 bits (173), Expect = 3.780e-14
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   20 CRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSVDV 66
            C++CLSDYE G+TLRILPC H+FH  CID WL  +  CP+C   VD+
Sbjct:   57 CQVCLSDYENGDTLRILPCFHEFHTPCIDPWLKINHTCPVCRVVVDL 103          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: UPI001C0A3BB0 (E3 ubiquitin-protein ligase RLIM-like n=2 Tax=Alosa TaxID=34772 RepID=UPI001C0A3BB0)

HSP 1 Score: 74.7 bits (182), Expect = 5.330e-14
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0
Query:   17 QVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLCNTSV 64
            Q  CRICLSDYEEG    ILPC H FH+ C+++WL +SP CP+C T +
Sbjct:  251 QSDCRICLSDYEEGEEFTILPCNHNFHRSCVNQWLQQSPTCPMCRTQI 298          
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Match: A0A812UGP8_SYMPI (RNF43 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UGP8_SYMPI)

HSP 1 Score: 75.1 bits (183), Expect = 7.720e-14
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0
Query:   20 CRICLSDYEEGNTLRILPCLHKFHQGCIDEWLGRSPLCPLC 60
            C ICL D+ EG  LRILPC H++HQGCIDEWLGRS  CPLC
Sbjct:  337 CCICLEDFVEGQQLRILPCFHRYHQGCIDEWLGRSDECPLC 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5907.13533.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI9_9PHAE6.280e-2284.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2Y0A3_9STRA1.060e-2073.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D6F5_9STRA1.920e-1657.41RING-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A835ZD21_9STRA2.170e-1667.31FAD dependent oxidoreductase-domain-containing pro... [more]
W7U3U3_9STRA2.090e-1557.41Ring u-box domain-containing protein n=1 Tax=Nanno... [more]
A0A7J7PSY4_9CHLO4.810e-1558.33RING-type domain-containing protein n=1 Tax=Scened... [more]
A0A7S2QJ38_9DINO8.670e-1552.63Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2L2Y4S9_PARTP3.780e-1459.57RING finger protein 38 (Fragment) n=2 Tax=Parastea... [more]
UPI001C0A3BB05.330e-1458.33E3 ubiquitin-protein ligase RLIM-like n=2 Tax=Alos... [more]
A0A812UGP8_SYMPI7.720e-1473.17RNF43 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 20..60
e-value: 1.2E-8
score: 44.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 19..61
e-value: 5.0E-14
score: 52.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 20..61
score: 12.43
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 19..61
e-value: 0.0033
score: 11.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 7..73
e-value: 3.2E-19
score: 69.9
NoneNo IPR availablePANTHERPTHR45931FAMILY NOT NAMEDcoord: 17..65
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 11..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5907contigH-paniculata_contig5907:4999..6621 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5907.13533.1mRNA_H-paniculata_contig5907.13533.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5907 4899..7079 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5907.13533.1 ID=prot_H-paniculata_contig5907.13533.1|Name=mRNA_H-paniculata_contig5907.13533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MATHVCSTVARILRASQVSCRICLSDYEEGNTLRILPCLHKFHQGCIDEW
LGRSPLCPLCNTSVDVVYNNPLYSDTSATVAATSTSNSL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD