prot_H-paniculata_contig58865.13508.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig58865.13508.1
Unique Nameprot_H-paniculata_contig58865.13508.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length96
Homology
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 91.7 bits (226), Expect = 1.600e-19
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLE-GKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH 95
            +KDLG    +LG+EV+R +  GT +ISQ  YIGEVLK+YG + C+ V TP+E G  +  +   R        Y+ ++GSLMY   GTRPDIA+AV+
Sbjct: 1053 LKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFAVN 1148          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A)

HSP 1 Score: 87.4 bits (215), Expect = 3.220e-18
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRS-GNSTEYRGMVGSLMYASTGTRPDIAYAVH 95
            MKDLG L   LG+ + R R NG   + Q  YI ++L KYG   C+ V TP++ K K+S  D  G S  +S  Y+ ++GSL+Y S  TRPDI+Y+V+
Sbjct:  112 MKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSVN 207          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS)

HSP 1 Score: 87.4 bits (215), Expect = 3.410e-18
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISA--PDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAV 94
            MKD+G  SR+LGI++RR R  G   +SQ SY+ +V++K+   E + V TP+ G  K+SA   DS         Y  +VGS+MYA  GTRPDIAYA+
Sbjct:  127 MKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSAVTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAI 222          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 85.1 bits (209), Expect = 3.190e-17
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRS--------GNSTEYRGMVGSLMYASTGTRPDIAYAV 94
            M+DLG  S +LGI +RR RP     +SQ  YI  VL +YG  +C+   TP+   VK SA D    +        G S  Y  ++GS+MYA  GTRPDIAY V
Sbjct: 1205 MRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLV 1306          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 81.3 bits (199), Expect = 6.200e-17
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLE-GK-VKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAV 94
            M D G ++ +LG+ VRR R  G   I Q +Y+  VL+++G DECR + TP+E GK  +  APD +    N   Y+  +GSL+YAS GTRPD++Y+V
Sbjct:   84 MVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPV--NLKSYQAAIGSLIYASIGTRPDLSYSV 177          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: Q9LVY5_ARATH (Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVY5_ARATH)

HSP 1 Score: 82.8 bits (203), Expect = 2.040e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNST--EYRGMVGSLMYASTGTRPDIAYAV 94
            MKD+G+ SR+LGI++ R R  GT  +SQ  Y+ +V++++   + +GV TP+    K+SA  +   S ++    Y  +VGS+MYA  G RPD+AYA+
Sbjct:  966 MKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSVVGSVMYAMIGNRPDVAYAL 1061          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A537R0H1_9PROT (DDE-type integrase/transposase/recombinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537R0H1_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 3.770e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAV 94
            MKDLG ++  LG+ + R R N T  ++Q +YI  V+K+ G + C  V TP+    K+        S N  EY+ +VGSLMYA  GTRPDIA+AV
Sbjct:  596 MKDLGEINHYLGMHIIRDRRNQTIHVNQTAYINAVIKRAGMEGCNAVSTPMIPGRKLETRKGSEPSVNKHEYQHLVGSLMYAMLGTRPDIAFAV 689          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A443S3D3_9ACAR (Integrase core domain protein-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S3D3_9ACAR)

HSP 1 Score: 80.1 bits (196), Expect = 1.690e-15
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0
Query:    4 LGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAV 94
            +G L+  LG++V R+R      ++Q SYI ++L KYG  +C+ V TP++  VK++  +S+        YR +VGSLMYA  G+RPDI YAV
Sbjct:  330 VGKLNSFLGLQVIRHRKEKLLNVNQESYIQKMLNKYGMTDCKSVKTPMDATVKLTKSESKSCE---FSYRELVGSLMYAMLGSRPDICYAV 417          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A067SDP3_GALM3 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SDP3_GALM3)

HSP 1 Score: 79.7 bits (195), Expect = 2.340e-15
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 0
Query:    3 DLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGM-----VGSLMYASTGTRPDIAYAV 94
            DLG L  +LGIEVRR R      +SQ SY+  ++++YGF++ + V  P++  V++++  S   +      R +     VGSLMYAS GTRPDI YAV
Sbjct:  240 DLGELHWILGIEVRRIREERRILLSQRSYLESIIRRYGFEDLKPVSIPMDPNVRLTSDQSPSTTQEFARMRDIPYHEAVGSLMYASLGTRPDITYAV 336          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A6D2HSU5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HSU5_9BRAS)

HSP 1 Score: 79.7 bits (195), Expect = 2.480e-15
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISA--PDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAV 94
            MKDLG+ SR+LG+++ R R  GT  +SQ +Y+ +V++ +   + +   TP+ G  K+S+   D  G       Y  +VGS+MYA  G+RPD+AY +
Sbjct: 1072 MKDLGAASRILGMDITRDREEGTLCLSQANYLRKVIENFRMSDAKSSLTPIGGHFKLSSVKDDEEGVDTEVIPYASVVGSIMYAMVGSRPDLAYGI 1167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MM55_ORNER1.600e-1946.88Reverse transcriptase, gag, polyprotein (Fragment)... [more]
UPI001C35AD5A3.220e-1844.79Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A6D2KZJ0_9BRAS3.410e-1846.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VT18_TRAPU3.190e-1744.12Retrovirus-related Pol polyprotein from transposon... [more]
A0A7M5XDS1_9CNID6.200e-1744.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9LVY5_ARATH2.040e-1640.63Copia-like retroelement pol polyprotein n=1 Tax=Ar... [more]
A0A537R0H1_9PROT3.770e-1644.68DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A443S3D3_9ACAR1.690e-1542.86Integrase core domain protein-like protein (Fragme... [more]
A0A067SDP3_GALM32.340e-1542.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2HSU5_9BRAS2.480e-1538.54Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..95
NoneNo IPR availablePANTHERPTHR11439:SF253coord: 1..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58865contigH-paniculata_contig58865:282..644 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58865.13508.1mRNA_H-paniculata_contig58865.13508.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig58865 3..875 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig58865.13508.1 ID=prot_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTP
LEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like