mRNA_H-paniculata_contig58865.13508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 217 bits (553), Expect = 8.810e-61 Identity = 116/267 (43.45%), Postives = 159/267 (59.55%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRREN-VDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
+A+YGLKQSGR WNNTL++ L +G +RS ++CL+ ++G + +AVYVDDL+I EN + K IS F M D GSLS LG+E++R G ++ Q +YI +LK YG CR V TPL+ + D N T+Y+ ++GSLMY + +RPDI +AV ++R +P+ E + K I RYLS +L I + + G + F DA+WA D DRKS +GY F L G A SW S KQ +V SSTE EYVA
Sbjct: 965 KAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQG--SSYIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTEAEYVA 1227
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM) HSP 1 Score: 206 bits (524), Expect = 1.790e-60 Identity = 106/272 (38.97%), Postives = 161/272 (59.19%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRRENVDEF-KHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGN-----STEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
R+LYGLKQS R WN T++DF++ +G ++ +D C++ D G + VA+YVDDLV+A + + E KH +S+ F M DLG L LG+E++ R +G + Q ++ +L K+G + + V TP + +K++ G + + YR +VG+LMY TRPD+A AV ++ DP + KR+ RYL P G+ F + + G+ + DA+WA D+E R+ST+GY F +NGG ISW S+KQ+ V SSTE EY+A
Sbjct: 38 RSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMA 306
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE) HSP 1 Score: 204 bits (519), Expect = 2.040e-60 Identity = 109/267 (40.82%), Postives = 157/267 (58.80%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLV-IAGRRENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
+++YGLKQS R WN F++ +G ++S++D C+ + ++AVYVDDL+ I E++DE K + + ++MKDLG LS +LGI V + + + Q YI +LKKYG D+ V TP + VK+ D + + Y+ MVGSL+YA+ TRPDIA AV ++ +P + KRI RYL +L + FD N L F DA+WA D++DR STTG +F L+GGA+SW S+KQ V S+ E EYVA
Sbjct: 5 KSIYGLKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQE---LEIIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVA 267
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 204 bits (520), Expect = 3.990e-60 Identity = 111/267 (41.57%), Postives = 157/267 (58.80%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGR-RENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
+ALYG KQ+ R WN+ L L G G RS D C++ + + ++ VYVDDL+I R + + E K + + F +K+LG L LGIE+ R R + T ++Q +YI + +K+G ++C+ V TP + K+ P YR +VG+LMY +T TRPDIA AV A+ E + + KRI +YL T DLG+ F+G + G L + DA WA D++ R+STTGYVF LNG AISW S++Q V SSTE EY+A
Sbjct: 43 QALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMA 306
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A) HSP 1 Score: 204 bits (520), Expect = 3.990e-60 Identity = 107/268 (39.93%), Postives = 157/268 (58.58%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVI-AGRRENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRS-GNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
++LYGLKQ+ R WN L+ L IGL++S D C+++ T VAVYVDD+++ R E + K+++S F MKDLG L LG+ + R R NG + Q YI ++L KYG C+ V TP++ K K+S D G S +S Y+ ++GSL+Y S TRPDI+Y+V+ ++ P + + KRI RYL + +T+ K + G+ F DA+W D R+S TGY+F G AI+W SR+Q V S+TE EY++
Sbjct: 36 KSLYGLKQASRQWNQKLDKTLKEIGLKQSLLDPCIYYKIRNEDIT--FVAVYVDDIILLTSRLETKNYIKNHLSSKFEMKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSVNTLSKFNSKPNMQHWMALKRILRYLKLTVNYTLTY--KKDDKGIHGFCDADWCSDEIQRRSCTGYIFIHQGAAITWNSRRQPTVALSTTEAEYMS 299
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA) HSP 1 Score: 205 bits (521), Expect = 5.660e-60 Identity = 110/272 (40.44%), Postives = 158/272 (58.09%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIA-GRRENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNS-----TEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
RALYGLKQS R WN T+++F+ IG + TD C++ D++ + V +YVDDL++A + + K +S+ F M DLG L LG+EV R +G ++ Q ++ VL K+G +C+ V TP + +K++ G + YR VG++MY GTRPD+A AV ++ DP + KR+ RYL P GI F G +G L + DA+WA D+E R+ST+GYVF LNGG I+W S+KQ+ V SSTE EY+A
Sbjct: 141 RALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKA--MIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMA 409
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 203 bits (516), Expect = 8.520e-60 Identity = 104/267 (38.95%), Postives = 166/267 (62.17%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRR-ENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
++ YGLKQS R WN+ L++ L IG ++ +D C++ +E G +VA++VDD+++AG+ E + + K +I++ F++KD+G L +LG++V + +G I Q +Y ++KKYG + C+ V TP++ K+ + N EY+ VGSL+Y S+ TRPDI +AV+ A+ + E ++ KRIFRYL + G+ + +N + F DA+WA D+ DRKST+GY F++NG A+SW S+KQ V S+ E EYVA
Sbjct: 18 KSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVK-EEDG-DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQV--IQEDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVA 279
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A6A3PPW4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PPW4_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.950e-59 Identity = 107/270 (39.63%), Postives = 162/270 (60.00%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRRENVDE-FKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHG---LERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
+ALYGL+QSGR WN+ L +L G +RS T+ CL++ +E T + V VYVDD+++A E E ++++ + +KD G L++ LG+EV + G I QG Y E+L K+G++E V P+E +++ + ++ S YR VG LMY +T TRPD+A+A+ +R + +P + KR+ RY++ D GIT+ K LE F D++WA D E RKSTTG+VF L GGA++W SR+Q ++ S+ E EYVA
Sbjct: 169 KALYGLRQSGREWNSELNQWLTDRGYQRSLTEPCLYYRFEEE--TIVYVLVYVDDILVATNNEQYKEKLFEDLNKAYGIKDQGLLTQYLGVEVEQ--TPGRITIRQGKYAREILAKFGYEEAHAVGNPMEVNARLAPIEEDEKAETSFPYREAVGMLMYLATSTRPDLAFALGQLSRFVANPLPKHVGALKRVLRYVAGTLDYGITYSRKQTEAKDVVLEGFCDSDWANDPEQRKSTTGFVFTLAGGALAWMSRRQSIIALSTAEAEYVA 434
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: B6V6Z8_DROME (Polyprotein n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=B6V6Z8_DROME) HSP 1 Score: 212 bits (540), Expect = 4.880e-59 Identity = 110/267 (41.20%), Postives = 159/267 (59.55%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRREN-VDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
+A+YGLKQSGR WN+TL++ L IG +RS ++CL+ ++ + +AVYVDDL+I EN + K I+ F + D G L+ LG+E++R G+ ++ Q +I +L KYG CR TPL+ K+ + N T+++ ++GSLMY + +RPDI + V ++R DP+ ED + K + RYLS DL IT+ +G + F DA+WA D+ DRKS +GY F L G A SW S KQ +V SSTE EYVA
Sbjct: 956 KAIYGLKQSGRVWNDTLDEVLKSIGFKRSKNEACLYAKQQQQ--QHSYIAVYVDDLIIISYDENEISAIKRKIANKFDIHDGGQLNYFLGMEIQRESTRGSISLCQKQFIINLLDKYGMQNCRPAATPLDPGYKMGCRNENCVKVNITQFQSLIGSLMYLAVLSRPDILHTVSKLSQRNTDPHSEDETAAKHVLRYLSATVDLKITYS--KSGEQVMGFADADWANDLSDRKSYSGYAFFLGGSAFSWTSAKQSVVAMSSTEAEYVA 1218
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 212 bits (540), Expect = 5.040e-59 Identity = 115/276 (41.67%), Postives = 160/276 (57.97%), Query Frame = 1
Query: 1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGR-RENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRS--------GNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLE--RFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYV 795
R+LYGLKQ+GR WN TL+ L G+G R +++CL+ D++G LV VYVDDL++A R +DE K ++ F+M+DLG S +LGI +RR RP +SQ YI VL +YG +C+ TP+ VK SA D + G S Y ++GS+MYA GTRPDIAY V R +P + + KR RYL D+ + FDG ++ + DA+W+ D + +ST+G+VF N GAI W S++Q LV SSTE EY+
Sbjct: 1128 RSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHGYSDADWSGDRDTSRSTSGFVFISNRGAIGWSSKRQSLVALSSTESEYI 1402 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58865.13508.1 >prot_H-paniculata_contig58865.13508.1 ID=prot_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPback to top mRNA from alignment at H-paniculata_contig58865:3..875- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58865.13508.1 ID=mRNA_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at H-paniculata_contig58865:3..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58865:3..875- >mRNA_H-paniculata_contig58865.13508.1 ID=mRNA_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig58865:3..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |