mRNA_H-paniculata_contig58775.13494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58775.13494.1
Unique NamemRNA_H-paniculata_contig58775.13494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 90.9 bits (224), Expect = 4.270e-19
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVGRC 315
            KI E     +YK R V  G  Q+ G+ +QE  SP    +S++ ++S+AA++DW++ H+D + AYL   ++++I+V+ P N+ E  G V RL KA+Y L Q GRC
Sbjct:  276 KIKETEGDRRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRC 379          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 90.9 bits (224), Expect = 4.410e-19
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVGRC 315
            KI E     +YK R V  G  Q+ G+ +QE  SP    +S++ ++S+AA++DW++ H+D + AYL   ++++I+V+ P N+ E  G V RL KA+Y L Q GRC
Sbjct:  881 KIKETEGDRRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRC 984          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6H5JZH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.210e-18
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVGR 312
            K +++GK+EK+K RPVA G  Q   + Y  +SSP P++ASIK+ML++A  +   L H D +QAY QA +D+K+F+K+     E      + D+AIY L Q GR
Sbjct:  253 KTNKEGKMEKFKARPVARGFSQFPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTQATLDEKVFLKLAAGCGEKSHKTVKADRAIYGLKQSGR 355          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 85.5 bits (210), Expect = 3.430e-17
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   16 DGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYL--EFPGAVGRLDKAIYELVQVGRC 315
            DG VE++K R VA G  Q +GI YQE  SP     SI+ +L++A I DWE+  +D + A+LQ  +D+ IF+K P  Y+  E P  V +L+++IY L Q  RC
Sbjct:  871 DGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARC 972          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 84.7 bits (208), Expect = 6.190e-17
Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RKIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGA---VGRLDKAIYELVQVGR 312
            +K DE+ +V K+K R  A G  Q+ G+ Y + ++P    AS++++L+LAA  DWE+  +DF+ AYL   +D+ I+++ P  + E PG    + RL KA+Y L Q GR
Sbjct:  272 KKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGF-EVPGREDWIWRLLKALYGLKQAGR 377          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A8H6YZQ1_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6YZQ1_9AGAR)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-16
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEF-----PGA------VGRLDKAIYELVQVGR 312
            K D   K+ +YK R VA+G  Q+ G+HY +  +P    A+++++L+ AA+ +WE+   D + AYL APID+ ++++IP +Y +F     P A      V +L+K IY   Q GR
Sbjct: 1001 KRDAQNKISRYKVRLVANGRTQVYGLHYTDTYAPVIRHATLRVLLTFAAVNNWEIHQADVKNAYLNAPIDETVYMEIPEHYQQFSSKPLPTAAAGRRLVAKLNKGIYGTKQGGR 1114          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A0V0GGR6_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GGR6_SOLCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.490e-16
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQ 303
            K   DG +E+YK R VA G  Q  GI Y E  +P     +++++LSLAA+ +W L+  D + A+L   +D++I++++P  +    G V RL KA+Y L Q
Sbjct:   10 KYKSDGSIERYKARLVAKGYTQTYGIDYLETFAPVAKMNTVRILLSLAAVFNWNLQQFDVKNAFLHGDLDEEIYMEVPPAFESKKGMVCRLKKALYGLKQ 109          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A177WMM1_BATDL (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WMM1_BATDL)

HSP 1 Score: 83.6 bits (205), Expect = 1.630e-16
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGA----VGRLDKAIYELVQ 303
            K   DG ++KYK R VA G  Q+ GI + E  +P     S++++L+LAAI DWE+ H D   A+L   ID+++++++P  Y    G     VGRL KA+Y L Q
Sbjct: 1053 KYKADGTIDKYKARLVAKGFAQVPGIDFHETYAPVLKFTSLRIILALAAIYDWEVDHTDANNAFLNGTIDEELYIELPEGYNNSTGGAIKRVGRLQKALYGLRQ 1156          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A2K3LWA1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LWA1_TRIPR)

HSP 1 Score: 83.2 bits (204), Expect = 2.090e-16
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNY-LEFPGAVGRLDKAIYELVQVGRC 315
            K + DG VE+YK R V  GN Q++G+ Y E  +P     +++ +L++AA+++WEL  +D   A+L   + +++F+K P  +    PG V RL K++Y L Q  RC
Sbjct:  103 KHNSDGTVERYKARLVILGNHQVEGVDYDETFAPVVKMVTVRTVLAVAAVKNWELHQMDVHNAFLHGDLQEEVFMKPPPGFHTTRPGMVCRLHKSLYGLKQAPRC 207          
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: I2FXR0_USTH4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ustilago hordei TaxID=120017 RepID=I2FXR0_USTH4)

HSP 1 Score: 78.2 bits (191), Expect = 2.610e-16
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   31 KYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVG 309
            KYK R VA G  Q KGI Y E  +P     SI+ +L++AA+QDWE+  +D +QAYL + +   +++K P+     PG V +L K +Y L Q G
Sbjct:    9 KYKARLVAQGFTQRKGIDYMEIFAPVAPIQSIRGVLAIAAMQDWEVDSIDVKQAYLNSSLHHDVYLKPPIGMKVLPGKVLKLMKGLYSLKQSG 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI4.270e-1940.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI4.410e-1940.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JZH7_9PHAE1.210e-1843.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT3.430e-1744.12Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8H7NVE6_9APHY6.190e-1739.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H6YZQ1_9AGAR1.200e-1636.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0GGR6_SOLCH1.490e-1638.00Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A177WMM1_BATDL1.630e-1640.38Uncharacterized protein n=4 Tax=Batrachochytrium d... [more]
A0A2K3LWA1_TRIPR2.090e-1637.14Retrovirus-related Pol polyprotein from transposon... [more]
I2FXR0_USTH42.610e-1641.94Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58775contigH-paniculata_contig58775:188..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue4.7e-14
Seed eggNOG ortholog4558.Sb08g015513.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YXJ@33090,3GHMT@35493,3MAH5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.1835415-CDS-H-paniculata_contig58775:187..5051622930641.1835415-CDS-H-paniculata_contig58775:187..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58775 188..505 -
1691481385.360081-CDS-H-paniculata_contig58775:187..5051691481385.360081-CDS-H-paniculata_contig58775:187..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58775 188..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58775.13494.1prot_H-paniculata_contig58775.13494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58775 188..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58775.13494.1

>prot_H-paniculata_contig58775.13494.1 ID=prot_H-paniculata_contig58775.13494.1|Name=mRNA_H-paniculata_contig58775.13494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
RKIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAA
IQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELV
QVGRC*
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mRNA from alignment at H-paniculata_contig58775:188..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58775.13494.1 ID=mRNA_H-paniculata_contig58775.13494.1|Name=mRNA_H-paniculata_contig58775.13494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig58775:188..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAATCGACGAGGACGGCAAAGTGGAGAAATACAAGTGCCGTCCGGT CGCCCACGGGAACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGT CCCCCGCACCCGCAGCGGCCAGCATAAAAATGATGTTGTCGCTTGCGGCA ATCCAGGACTGGGAGCTTCGGCACGTCGACTTTGAACAAGCGTATCTGCA AGCGCCTATCGACCAGAAGATATTCGTCAAAATTCCCGTAAACTACCTGG AGTTCCCAGGAGCGGTGGGGCGCCTCGACAAGGCAATCTACGAATTGGTC CAAGTTGGTAGATGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig58775:188..505-

>mRNA_H-paniculata_contig58775.13494.1 ID=mRNA_H-paniculata_contig58775.13494.1|Name=mRNA_H-paniculata_contig58775.13494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig58775:188..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAATCGACGAGGACGGCAAAGTGGAGAAATACAAGTGCCGTCCGGT
CGCCCACGGGAACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGT
CCCCCGCACCCGCAGCGGCCAGCATAAAAATGATGTTGTCGCTTGCGGCA
ATCCAGGACTGGGAGCTTCGGCACGTCGACTTTGAACAAGCGTATCTGCA
AGCGCCTATCGACCAGAAGATATTCGTCAAAATTCCCGTAAACTACCTGG
AGTTCCCAGGAGCGGTGGGGCGCCTCGACAAGGCAATCTACGAATTGGTC
CAAGTTGGTAGATGCTAAAGAAAAATCGACGAGGACGGCAAAGTGGAGAA
ATACAAGTGCCGTCCGGTCGCCCACGGGAACCGTCAGATCAAGGGCATCC
ACTACCAGGAAGCTTCGTCCCCCGCACCCGCAGCGGCCAGCATAAAAATG
ATGTTGTCGCTTGCGGCAATCCAGGACTGGGAGCTTCGGCACGTCGACTT
TGAACAAGCGTATCTGCAAGCGCCTATCGACCAGAAGATATTCGTCAAAA
TTCCCGTAAACTACCTGGAGTTCCCAGGAGCGGTGGGGCGCCTCGACAAG
GCAATCTACGAATTGGTCCAAGTTGGTAGATGCTAA
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