mRNA_H-paniculata_contig58775.13494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 90.9 bits (224), Expect = 4.270e-19 Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVGRC 315
KI E +YK R V G Q+ G+ +QE SP +S++ ++S+AA++DW++ H+D + AYL ++++I+V+ P N+ E G V RL KA+Y L Q GRC
Sbjct: 276 KIKETEGDRRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRC 379
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 90.9 bits (224), Expect = 4.410e-19 Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVGRC 315
KI E +YK R V G Q+ G+ +QE SP +S++ ++S+AA++DW++ H+D + AYL ++++I+V+ P N+ E G V RL KA+Y L Q GRC
Sbjct: 881 KIKETEGDRRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRC 984
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6H5JZH7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH7_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.210e-18 Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVGR 312
K +++GK+EK+K RPVA G Q + Y +SSP P++ASIK+ML++A + L H D +QAY QA +D+K+F+K+ E + D+AIY L Q GR
Sbjct: 253 KTNKEGKMEKFKARPVARGFSQFPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTQATLDEKVFLKLAAGCGEKSHKTVKADRAIYGLKQSGR 355
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 85.5 bits (210), Expect = 3.430e-17 Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 16 DGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYL--EFPGAVGRLDKAIYELVQVGRC 315
DG VE++K R VA G Q +GI YQE SP SI+ +L++A I DWE+ +D + A+LQ +D+ IF+K P Y+ E P V +L+++IY L Q RC
Sbjct: 871 DGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARC 972
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY) HSP 1 Score: 84.7 bits (208), Expect = 6.190e-17 Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 1 RKIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGA---VGRLDKAIYELVQVGR 312
+K DE+ +V K+K R A G Q+ G+ Y + ++P AS++++L+LAA DWE+ +DF+ AYL +D+ I+++ P + E PG + RL KA+Y L Q GR
Sbjct: 272 KKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGF-EVPGREDWIWRLLKALYGLKQAGR 377
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A8H6YZQ1_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6YZQ1_9AGAR) HSP 1 Score: 84.0 bits (206), Expect = 1.200e-16 Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEF-----PGA------VGRLDKAIYELVQVGR 312
K D K+ +YK R VA+G Q+ G+HY + +P A+++++L+ AA+ +WE+ D + AYL APID+ ++++IP +Y +F P A V +L+K IY Q GR
Sbjct: 1001 KRDAQNKISRYKVRLVANGRTQVYGLHYTDTYAPVIRHATLRVLLTFAAVNNWEIHQADVKNAYLNAPIDETVYMEIPEHYQQFSSKPLPTAAAGRRLVAKLNKGIYGTKQGGR 1114
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A0V0GGR6_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GGR6_SOLCH) HSP 1 Score: 78.2 bits (191), Expect = 1.490e-16 Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQ 303
K DG +E+YK R VA G Q GI Y E +P +++++LSLAA+ +W L+ D + A+L +D++I++++P + G V RL KA+Y L Q
Sbjct: 10 KYKSDGSIERYKARLVAKGYTQTYGIDYLETFAPVAKMNTVRILLSLAAVFNWNLQQFDVKNAFLHGDLDEEIYMEVPPAFESKKGMVCRLKKALYGLKQ 109
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A177WMM1_BATDL (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WMM1_BATDL) HSP 1 Score: 83.6 bits (205), Expect = 1.630e-16 Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGA----VGRLDKAIYELVQ 303
K DG ++KYK R VA G Q+ GI + E +P S++++L+LAAI DWE+ H D A+L ID+++++++P Y G VGRL KA+Y L Q
Sbjct: 1053 KYKADGTIDKYKARLVAKGFAQVPGIDFHETYAPVLKFTSLRIILALAAIYDWEVDHTDANNAFLNGTIDEELYIELPEGYNNSTGGAIKRVGRLQKALYGLRQ 1156
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: A0A2K3LWA1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LWA1_TRIPR) HSP 1 Score: 83.2 bits (204), Expect = 2.090e-16 Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 4 KIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNY-LEFPGAVGRLDKAIYELVQVGRC 315
K + DG VE+YK R V GN Q++G+ Y E +P +++ +L++AA+++WEL +D A+L + +++F+K P + PG V RL K++Y L Q RC
Sbjct: 103 KHNSDGTVERYKARLVILGNHQVEGVDYDETFAPVVKMVTVRTVLAVAAVKNWELHQMDVHNAFLHGDLQEEVFMKPPPGFHTTRPGMVCRLHKSLYGLKQAPRC 207
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Match: I2FXR0_USTH4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ustilago hordei TaxID=120017 RepID=I2FXR0_USTH4) HSP 1 Score: 78.2 bits (191), Expect = 2.610e-16 Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 31 KYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAIQDWELRHVDFEQAYLQAPIDQKIFVKIPVNYLEFPGAVGRLDKAIYELVQVG 309
KYK R VA G Q KGI Y E +P SI+ +L++AA+QDWE+ +D +QAYL + + +++K P+ PG V +L K +Y L Q G
Sbjct: 9 KYKARLVAQGFTQRKGIDYMEIFAPVAPIQSIRGVLAIAAMQDWEVDSIDVKQAYLNSSLHHDVYLKPPIGMKVLPGKVLKLMKGLYSLKQSG 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58775.13494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58775.13494.1 >prot_H-paniculata_contig58775.13494.1 ID=prot_H-paniculata_contig58775.13494.1|Name=mRNA_H-paniculata_contig58775.13494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp RKIDEDGKVEKYKCRPVAHGNRQIKGIHYQEASSPAPAAASIKMMLSLAAback to top mRNA from alignment at H-paniculata_contig58775:188..505- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58775.13494.1 ID=mRNA_H-paniculata_contig58775.13494.1|Name=mRNA_H-paniculata_contig58775.13494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig58775:188..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58775:188..505- >mRNA_H-paniculata_contig58775.13494.1 ID=mRNA_H-paniculata_contig58775.13494.1|Name=mRNA_H-paniculata_contig58775.13494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig58775:188..505- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |