mRNA_H-paniculata_contig587.13482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig587.13482.1
Unique NamemRNA_H-paniculata_contig587.13482.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 5.470e-108
Identity = 163/199 (81.91%), Postives = 177/199 (88.94%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPGNNP 597
            L S MFLHAGVVHFLFNMLGFLQVG MVERVFGWWRVA IYLV+G+FGTIVSAIFVP QVMVGASGAIFGVFGALWADLWQNWSV  ++C   TVL  LTA+N++LGLMPFLDNFAH GG++MG FMGLGLLVQKRED  G RL  KCYQ +LQLV+AVAVPTL+ILGLSLLYGRSDP EWCGWCE ISCVEFPPG++P
Sbjct:  478 LISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVASIYLVSGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGLMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLNKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDSP 676          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 7.220e-107
Identity = 163/201 (81.09%), Postives = 178/201 (88.56%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQ--TLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPGNNP 597
            L S MFLHAGVVHFLFNMLGFLQVG MVERVFGWWRVA IYLVAG+FGTIVSAIFVP QVMVGASGAIFGVFGALWADLWQNWSV  ++C   TVL  LTA+N++LGLMP+LDNFAH GG++MG FMGLGLLVQKRED  G RL+ KCYQ   +LQLV+AVAVPTL+ILGLSLLYGRSDP EWCGWCE ISCVEFPPG++P
Sbjct:  476 LISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGLMPYLDNFAHCGGMLMGLFMGLGLLVQKREDDRGYRLDKKCYQARVSLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDSP 676          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A835YQV6_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV6_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.620e-64
Identity = 102/199 (51.26%), Postives = 141/199 (70.85%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDP--NEWCGWCEKISCVEFPPGN 591
            L SA+FLHAG++HF+FNML    +G ++ERVFG ++V +I++V+G+F T VSAIF+P QVMVGASGAI G+ G +WADL QNWS+      ++ VL  +TA+N++LGLMP+LDNFAH+GG++MGFF  L LLV + E + G  +     Q+ LQ +  V    LL+  L +L+G  +   NEWC WC  +SCVEFP G+
Sbjct:   48 LLSAVFLHAGIIHFIFNMLALFSIGAVLERVFGGFKVLVIFIVSGVFSTAVSAIFLPYQVMVGASGAILGLLGGVWADLLQNWSLKQRPWVSIIVLFTITAVNLLLGLMPYLDNFAHMGGLVMGFFCSLPLLVMRAETAHGKLVAVSVRQRILQALGLVTSIALLVAALVVLFGSEEDSVNEWCSWCSNLSCVEFPKGD 246          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A7S3UQB1_HETAK (Rhomboid-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQB1_HETAK)

HSP 1 Score: 201 bits (512), Expect = 4.090e-59
Identity = 105/199 (52.76%), Postives = 131/199 (65.83%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPGNNP 597
            +F+ MFLH+G+VH +FNM G   +   +ER  GW R+ +IYL++GIFGT+ SAIFVP Q+MVGASGAIFG+ GA WADL QNWSV  +    L+ L FLTA N V G MP+LDNFAH GG++ G   GL LL Q R D FG     KCYQ  L  ++A+    LL+   + LY  +D    C  C K+SCVEFPPG  P
Sbjct:  230 IFTPMFLHSGLVHLVFNMTGLWYLVREMERTHGWQRLTVIYLLSGIFGTLCSAIFVPYQLMVGASGAIFGMVGARWADLIQNWSVLHKPWVELSFLFFLTASNYVFGFMPYLDNFAHTGGMVFGVLCGLVLLAQTRVDHFGFARGRKCYQTALATLAAMGTAALLMAATAWLYSSADVYAICPRCSKLSCVEFPPGAGP 428          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A7S2RTG0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RTG0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.040e-55
Identity = 92/189 (48.68%), Postives = 128/189 (67.72%), Query Frame = 1
Query:   34 VHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLF-LTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPGNNP 597
            +H+LFNM+    VG  +ER FG   +  I+LV+G  G I SAIF PL + VGASG +FG+FGA W+DL  N+S+Y  +   + V LF +T LN+++GL+P++DNFAHIGG++ G   G G+LV  R   +G   E K YQ  LQ++SAV +P L+++ L +LY   +P EWC WC  +SCV+FPPG NP
Sbjct:    1 IHWLFNMIALTAVGFPLERQFGSGALLYIFLVSGFMGNIFSAIFSPLTIGVGASGGVFGIFGAAWSDLILNYSLYKGRVCRIFVQLFCVTFLNLIVGLIPYVDNFAHIGGLLTGMIAGFGVLVANRYSRYGELKERKRYQLVLQIMSAVLIPVLIVVCLFVLY-LGEPGEWCSWCHYMSCVQFPPGPNP 188          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A2R5GUE1_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUE1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 3.730e-55
Identity = 96/200 (48.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYS-EKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPGNNP 597
            L + +FLHAG++H+LFNM    Q+G  +E  FG    ALI L+ G  G + SAI  P+ V VGASGAIF +FG+ W++L  NWS+Y  + C ++T L+  TA+N++LGLMPFLDNFAHI G + G  +G G+LV  R   +G   E K YQ  LQ +S +  P L+++ L +LY   D +EWC WC  +SCV FPPG++P
Sbjct:  129 LIAPIFLHAGILHYLFNMFALWQIGFPLENQFGSLAAALIILLGGFQGVVWSAILSPVTVGVGASGAIFALFGSAWSELILNWSLYKGQHCISITQLVLATAVNLMLGLMPFLDNFAHIAGFVTGILVGFGVLVSNRFTRWGELKERKRYQVVLQSLSVLITPLLVVVSLLVLYLGVDADEWCTWCRYLSCVPFPPGDSP 328          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A2R5H0C6_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0C6_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.550e-50
Identity = 90/197 (45.69%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKC-WALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPG 588
            +F+ + LHAG VH LFN+L    +G  +ER FG  ++++I++ +GIFG ++SAIF+P Q+ VGASGA+FG+FGA W+DL  NWS+Y     W L  L+  T  N+ LGL+P+LDNFAH GG   G F+G  LLVQKR + +G   + K YQ  +Q ++ V +P L ++   +LY   +  + C WC  ISCV  P G
Sbjct:  191 IFTPIILHAGFVHLLFNLLALYNIGFSMERDFGSLKISIIFIGSGIFGVLLSAIFLPQQLSVGASGALFGLFGAAWSDLLHNWSLYGNSAKWVLLQLVLATIFNLGLGLLPYLDNFAHFGGFCCGLFLGFTLLVQKRYNIWGDLQQRKTYQVVVQSLALVILPILFVVLTLVLYLDVNVADSCDWCSYISCVPLPIG 387          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A251UCK3_HELAN (RHOMBOID-like protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UCK3_HELAN)

HSP 1 Score: 162 bits (411), Expect = 2.410e-45
Identity = 82/202 (40.59%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKRED------SFGSRLET--KCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFP 582
            +F+ M+LHAGV H   NML  L VG  +E+ FG+ R+ L+Y+V+GI G+++S++F+   + VGASGA+FG+ GA+ ++L  NW++Y+ K  AL +L+ +  +N+++G++P +DNFAHIGG I GFF+G  LL + + D       +G  ++   K YQ  L ++S +A+  +   G   LY + D N +C WC  +SCV  P
Sbjct:  115 IFTCMWLHAGVFHIFTNMLSLLSVGIRLEQEFGFARIGLLYIVSGIGGSLLSSLFIRKTISVGASGALFGLLGAMLSELLTNWAIYANKVAALVMLVLMILMNLLVGILPHVDNFAHIGGFITGFFLGFILLARPQLDWIVPPGYYGHPMKPQYKLYQYVLIVLSVIALIVIFTTGFVFLYRKIDGNNYCSWCHYLSCVPTP 316          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: V4KD79_EUTSA (RHOMBOID-like protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KD79_EUTSA)

HSP 1 Score: 160 bits (404), Expect = 9.080e-45
Identity = 85/197 (43.15%), Postives = 129/197 (65.48%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETK-------CYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISC 570
            L S M+LHAG++H L NML  + +G  +E+ FG+ RV LIYL++G  G+I+S++F+   + VGASGA+FG+ GA+ ++L  NW++Y+ K  AL  LLF+ A+N+ LGL+P +DNFAHIGG + GF +G  LL++ +     SR  T         YQ  L +V+AV +   L +GL +L+   + N+ C WC ++SC
Sbjct:  117 LLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGFGGSILSSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLGLGLLPRVDNFAHIGGFLTGFCLGFVLLLRPQYGWEASRTSTSRTKRKHSMYQYVLFVVAAVLLVVGLTVGLVMLFKGENGNKHCKWCHRLSC 313          
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Match: A0A0A7E6W5_9LILI (RHOMBOID-like protein (Fragment) n=1 Tax=Lilium brownii TaxID=82312 RepID=A0A0A7E6W5_9LILI)

HSP 1 Score: 160 bits (406), Expect = 1.010e-44
Identity = 83/202 (41.09%), Postives = 129/202 (63.86%), Query Frame = 1
Query:    1 LFSAMFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAIFVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNVVLGLMPFLDNFAHIGGIIMGFFMGLGLLVQ-------KREDSFGSRL----ETKCYQQTLQLVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCV 573
            LF+ M+LHAGV H L NML  + +G  +E+ FG+ R+ L+YL++G  G+++SA+FV   + VGASGA+FG+ GA+ ++L  NW++YS K  AL  L+ +T +N+ +G++P +DNFAHIGG + GF +G   L++       +R    G R     + K YQ  L L++A+ + T   +GL +L+    PN+ C WC  +SCV
Sbjct:   97 LFTCMWLHAGVFHLLANMLSLIFIGIRLEQEFGFVRIGLLYLISGFGGSLLSALFVQTSISVGASGALFGLLGAMLSELITNWTIYSNKLAALLTLVIITVINLAVGILPHVDNFAHIGGFVSGFCLGFVFLIRPQYRWVSQRNVPLGYRTGPVRKHKVYQYILWLIAAIVLITGFTVGLIMLFRGYSPNDHCSWCHYMSCV 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig587.13482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB7_ECTSI5.470e-10881.91Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JTL7_9PHAE7.220e-10781.09Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A835YQV6_9STRA1.620e-6451.26Rhomboid-like protein n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3UQB1_HETAK4.090e-5952.76Rhomboid-like protein n=1 Tax=Heterosigma akashiwo... [more]
A0A7S2RTG0_9STRA3.040e-5548.68Rhomboid-like protein (Fragment) n=1 Tax=labyrinth... [more]
A0A2R5GUE1_9STRA3.730e-5548.00Rhomboid-like protein n=1 Tax=Hondaea fermentalgia... [more]
A0A2R5H0C6_9STRA1.550e-5045.69Rhomboid-like protein n=1 Tax=Hondaea fermentalgia... [more]
A0A251UCK3_HELAN2.410e-4540.59RHOMBOID-like protein n=1 Tax=Helianthus annuus Ta... [more]
V4KD79_EUTSA9.080e-4543.15RHOMBOID-like protein n=1 Tax=Eutrema salsugineum ... [more]
A0A0A7E6W5_9LILI1.010e-4441.09RHOMBOID-like protein (Fragment) n=1 Tax=Lilium br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig587contigH-paniculata_contig587:32172..34675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue1.4e-88
Seed eggNOG ortholog2880.D8LIB7
KEGG koko:K16571
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0005911,GO:0006508,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008283,GO:0009506,GO:0009894,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016477,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0023051,GO:0030054,GO:0030162,GO:0031090,GO:0031323,GO:0031329,GO:0031984,GO:0032268,GO:0032879,GO:0032880,GO:0040011,GO:0042058,GO:0042175,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048870,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051171,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051674,GO:0055044,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070201,GO:0071704,GO:0071944,GO:0080090,GO:0090087,GO:0098588,GO:0098791,GO:0098827,GO:0140096,GO:1901184,GO:1901564,GO:1903050,GO:1903362,GO:1903530,GO:1903531,GO:1904950
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Exons4
Model size597
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig587.13482.1prot_H-paniculata_contig587.13482.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig587 32172..34663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.7166216-CDS-H-paniculata_contig587:32171..323181622930639.7166216-CDS-H-paniculata_contig587:32171..32318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 32172..32318 -
1691481384.867705-CDS-H-paniculata_contig587:32171..323181691481384.867705-CDS-H-paniculata_contig587:32171..32318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 32172..32318 -
1622930639.7335348-CDS-H-paniculata_contig587:32792..329411622930639.7335348-CDS-H-paniculata_contig587:32792..32941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 32793..32941 -
1691481384.8776555-CDS-H-paniculata_contig587:32792..329411691481384.8776555-CDS-H-paniculata_contig587:32792..32941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 32793..32941 -
1622930639.8694806-CDS-H-paniculata_contig587:33576..337691622930639.8694806-CDS-H-paniculata_contig587:33576..33769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 33577..33769 -
1691481384.8858726-CDS-H-paniculata_contig587:33576..337691691481384.8858726-CDS-H-paniculata_contig587:33576..33769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 33577..33769 -
1622930639.9014497-CDS-H-paniculata_contig587:34567..346631622930639.9014497-CDS-H-paniculata_contig587:34567..34663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 34568..34663 -
1691481384.8953245-CDS-H-paniculata_contig587:34567..346631691481384.8953245-CDS-H-paniculata_contig587:34567..34663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 34568..34663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.9145277-UTR-H-paniculata_contig587:34663..346751622930639.9145277-UTR-H-paniculata_contig587:34663..34675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig587 34664..34675 -
1691481384.9080052-UTR-H-paniculata_contig587:34663..346751691481384.9080052-UTR-H-paniculata_contig587:34663..34675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig587 34664..34675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig587.13482.1

>prot_H-paniculata_contig587.13482.1 ID=prot_H-paniculata_contig587.13482.1|Name=mRNA_H-paniculata_contig587.13482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MFLHAGVVHFLFNMLGFLQVGTMVERVFGWWRVALIYLVAGIFGTIVSAI
FVPLQVMVGASGAIFGVFGALWADLWQNWSVYSEKCWALTVLLFLTALNV
VLGLMPFLDNFAHIGGIIMGFFMGLGLLVQKREDSFGSRLETKCYQQTLQ
LVSAVAVPTLLILGLSLLYGRSDPNEWCGWCEKISCVEFPPGNNP
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mRNA from alignment at H-paniculata_contig587:32172..34675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig587.13482.1 ID=mRNA_H-paniculata_contig587.13482.1|Name=mRNA_H-paniculata_contig587.13482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2504bp|location=Sequence derived from alignment at H-paniculata_contig587:32172..34675- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTCAGCAATGTTTCTTCACGCAGGGGTGGTTCACTTCTTGTTCAA CATGCTCGGATTCTTGCAAGTTGGGACGATGGTGGAGAGAGTCTTCGGTT GGTGGCGGGTAAGTGTCATGGCCGTCTAATAGGCTACTGTACACAGATAG GTTCATAGGGTATTGACATCATATTGGAGAATATCCCCCCTCGTGCGTCC CCCGTTCCCCGAGAAATCTGAAGCGGTTTTAGGAGATAGCACTAGCCTCA ACAGGCGAGGGTCGAGGTAGATGAGTGAAATATTTTTGAGCCATATTTCC CAGAGGTAGGAAATACTGATCGAAAATCGCTCTGATGAGGATCTACGCTC CGCCCTCTCGAGCACTCGTGGTCAGCGCTGTAGTAACAACTTTATTATCA CTAGTAGTAGAACCACGGCCACTACGTCTGTTCAGTCTGTGCTTGTCTTC TTGACCCCACGAACCTGTTGTGCTTGAGTTGGGGGGAGGCTCGTTCGGGG CATAACTGCTCGGTGTGCTCGCATGAAAATTCGTTGTTCAGATGTTACTC AAGTACAGATTTCAAAAGCTATTCGGAACTAATAACGAAGGGATTAGACT TTTTGAGACCAAACTGTACCCAAATTCCTAGTGAGTGTGGCACCAGGGGC CTTGTCCCTCCATCGTACGGACCCTCCCCACTCACTACCGCCCCGCGTAA CAACCTACAAAAAGAGACGATACCATCAATTACGGTTTTTTCGTTTTAAT TCCCTTACTATTTTTTTTGTGCTGAGAGATGACGATATCCAGGCTACATT TTTTGCAGGCTAAATAATCCTCATTGTGCACACAATTATCCCGACTCAGC GACCCACCAACCGACCCTGCCTCCCTATGCGCGACTGTTTTCCCCGGCCG CTGCAGGTAGCGCTCATCTATCTCGTAGCAGGTATATTCGGTACGATTGT GTCGGCTATTTTTGTGCCGCTCCAGGTTATGGTCGGAGCATCCGGAGCGA TCTTCGGAGTTTTCGGCGCGTTATGGGCAGATTTGTGGCAAAATTGGAGT GTGTATTCGGAGAAGTGCTGGGCGCTTACGGTGCTCTTGTTTCTTACAGG TGAGGAAGAGTGGTCCAACGTACCAGAAGTTTTTGTGTGTAGGATAACAC CTTCATGTGTGAACATGAAGACGAAAATAGCAGTCCGAACGCCACAGGCT CAGTCTGTTGTAGTTTTTTTTTAATGTAGCATGTAATATGGAGGGAAGAA TGTATATGCAGATAAGTGTGCTACTTTTTTATACCATGTATCCATCCTAT CTAAATATCTATCTCTATTTATGTATGCTTTCGTTTCCATGGTGTACATT TCGTATCATTTACTGGTGGTGGATTATGAAAGGCACATGCAGTTCGTGCT TGTCCTCGACCCACAGTCTCTCTGGGCTCAAACTGCCTCAGTACGCTGGC ATGATTCGTTTTTCAGGAGTCAGTTGGGTACAAAATCGAAAAATGTTTAT CATCAACGACAACGACCACGATCACGATCACCGATCATCATCCTACCATA TTACATATTACGGATTCCACGTGCGATACCATAGTTGGCCCGCCAGTTTT CCTGATTGTCCCGATCCTCCATGTTTCAAACCGCTGCCTTGCCTCTTGCT TCCCTCTTCCGTGTATGTATGTGTGTATGTTTTTTTTTTTTTTCTATTTC CGTCGGGATTTATTATCCACGTACATACCCACAGCGTTGAATGTGGTGCT GGGTTTGATGCCGTTTTTGGATAACTTTGCGCACATCGGAGGTATCATAA TGGGATTCTTCATGGGTCTCGGTCTTCTGGTGCAGAAACGGGAAGACTCT TTCGGATCCCGCCTAGAGACCAAATGCTATCAGGTGCGATACAACGTGTT ACACACGCTCACCTACATTCTCCATCAGTGTGTTTTTAATGCACTAGCAG GCAGTTCACGGTTATGGTACGCCATTGGCGTACCTAGCTTGAATTTAGAC CCTCTCAAAGTAGCTTCGTATCACTTGACAATTGTTTAAACAAAGAAGTC GAGTAGATAACGCCAACTATTATGAAAGGAGCGCCATCATGATCGATCAT GGTGGCGGGTGATAAAGATGAGGATAGTGGTTATCGTTGTTACCCTAGCA ATTAACACGGACATCAAGAACGCCATCCCGTGAGTCGTCTGAGATTTTTT TATTCTTCTTTCATTATAGGCTCGGTCAAAATCTTGTCGCCCTTTTTCTT TGTAGTAATGACCTTTGATCAGGTTTTTGAACCGGGTTTTAAACAGATCA CTCCTTGTTTCGTTTCATTTCGCTTCGTTTTTTAATTTTTTTCGATTATG AAAATAGCAAACACTCCAATTGGTTTCGGCCGTGGCGGTGCCCACCCTGT TGATACTCGGATTGTCCCTTCTTTACGGGCGGTCGGATCCGAATGAATGG TGCGGCTGGTGCGAGAAAATCTCGTGCGTCGAGTTCCCGCCAGGGAACAA TCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig587:32172..34675-

>mRNA_H-paniculata_contig587.13482.1 ID=mRNA_H-paniculata_contig587.13482.1|Name=mRNA_H-paniculata_contig587.13482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig587:32172..34675- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCTTCACGCAGGGGTGGTTCACTTCTTGTTCAACATGCTCGGATT
CTTGCAAGTTGGGACGATGGTGGAGAGAGTCTTCGGTTGGTGGCGGATGT
TTCTTCACGCAGGGGTGGTTCACTTCTTGTTCAACATGCTCGGATTCTTG
CAAGTTGGGACGATGGTGGAGAGAGTCTTCGGTTGGTGGCGGGTAGCGCT
CATCTATCTCGTAGCAGGTATATTCGGTACGATTGTGTCGGCTATTTTTG
TGCCGCTCCAGGTTATGGTCGGAGCATCCGGAGCGATCTTCGGAGTTTTC
GGCGCGTTATGGGCAGATTTGTGGCAAAATTGGAGTGTGTATTCGGAGAA
GTGCTGGGCGCTTACGGTGCTCTTGTTTCTTACAGGTAGCGCTCATCTAT
CTCGTAGCAGGTATATTCGGTACGATTGTGTCGGCTATTTTTGTGCCGCT
CCAGGTTATGGTCGGAGCATCCGGAGCGATCTTCGGAGTTTTCGGCGCGT
TATGGGCAGATTTGTGGCAAAATTGGAGTGTGTATTCGGAGAAGTGCTGG
GCGCTTACGGTGCTCTTGTTTCTTACAGCGTTGAATGTGGTGCTGGGTTT
GATGCCGTTTTTGGATAACTTTGCGCACATCGGAGGTATCATAATGGGAT
TCTTCATGGGTCTCGGTCTTCTGGTGCAGAAACGGGAAGACTCTTTCGGA
TCCCGCCTAGAGACCAAATGCTATCAGCGTTGAATGTGGTGCTGGGTTTG
ATGCCGTTTTTGGATAACTTTGCGCACATCGGAGGTATCATAATGGGATT
CTTCATGGGTCTCGGTCTTCTGGTGCAGAAACGGGAAGACTCTTTCGGAT
CCCGCCTAGAGACCAAATGCTATCAGCAAACACTCCAATTGGTTTCGGCC
GTGGCGGTGCCCACCCTGTTGATACTCGGATTGTCCCTTCTTTACGGGCG
GTCGGATCCGAATGAATGGTGCGGCTGGTGCGAGAAAATCTCGTGCGTCG
AGTTCCCGCCAGGGAACAATCCGCAAACACTCCAATTGGTTTCGGCCGTG
GCGGTGCCCACCCTGTTGATACTCGGATTGTCCCTTCTTTACGGGCGGTC
GGATCCGAATGAATGGTGCGGCTGGTGCGAGAAAATCTCGTGCGTCGAGT
TCCCGCCAGGGAACAATCCG
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