mRNA_H-paniculata_contig587.13479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig587.13479.1
Unique NamemRNA_H-paniculata_contig587.13479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig587.13479.1 vs. uniprot
Match: A0A6H5KZY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 7.160e-14
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   10 AALLSSEESWFKVSVTCNPWEGWPMRRVLWPLLYTLTDP--------------SRQATSTMDARVLMASVREEILRPLGLCPPW-DKDNLD 237
            A  L+SE+ WF+  V   PWEGW MRRVLWPLL  +T P              SR+       R L +S R ++LRP GLCPPW D+D  D
Sbjct:  938 AERLASEQFWFESRVPSLPWEGWAMRRVLWPLLSLVTAPPPSTTAPGTPGPAGSREQDRAAAVRALASSARRKVLRPAGLCPPWGDEDGGD 1028
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig587.13479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZY8_9PHAE7.160e-1445.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig587contigH-paniculata_contig587:4125..4913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.2777257-CDS-H-paniculata_contig587:4125..44371622930639.2777257-CDS-H-paniculata_contig587:4125..4437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 4126..4437 -
1691481384.6415231-CDS-H-paniculata_contig587:4125..44371691481384.6415231-CDS-H-paniculata_contig587:4125..4437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 4126..4437 -
1622930639.2936609-CDS-H-paniculata_contig587:4841..49131622930639.2936609-CDS-H-paniculata_contig587:4841..4913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 4842..4913 -
1691481384.6556153-CDS-H-paniculata_contig587:4841..49131691481384.6556153-CDS-H-paniculata_contig587:4841..4913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 4842..4913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig587.13479.1prot_H-paniculata_contig587.13479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig587 4126..4913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig587.13479.1

>prot_H-paniculata_contig587.13479.1 ID=prot_H-paniculata_contig587.13479.1|Name=mRNA_H-paniculata_contig587.13479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
LFSAALLSSEESWFKVSVTCNPWEGWPMRRVLWPLLYTLTDPSRQATSTM
DARVLMASVREEILRPLGLCPPWDKDNLDHLGQPGGESGDPKHTDILAAD
AVTGGSGGMELARRNAANMAAKIRSSVG
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mRNA from alignment at H-paniculata_contig587:4125..4913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig587.13479.1 ID=mRNA_H-paniculata_contig587.13479.1|Name=mRNA_H-paniculata_contig587.13479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at H-paniculata_contig587:4125..4913- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTCTGCTGCTCTGCTGAGCTCTGAGGAGTCATGGTTCAAAGTCTC
CGTCACGTGCAACCCGTGGGAGGTTAGTTCTTTTTGTTCGACACTAGTAA
ATTGAAGATTACATGTCAATAACTGAAAAAAAAAAAAAGAGATCAAATTT
TGTTATGAAAACACGTCAGCCCCTTCGGTTGGTTGTTAGCGAGCACGGTG
TGTGTTGTGATGTTTGGTGCTTCCATTCTCGCCCGTACGTTGCGTGTCCG
CATCACGTCTTATTGCTGGAGTCAAGAATCCCACACACCCCCTTTTACTC
CCCCCACATAACGCGTCTCGTTTCGTGTGCCCTTCGAACACTACATCACC
ATGAACTGCAAATATCAATTCAATGATCTACCAAACCAATTCACCTTCAC
GCTGGAGTATGACAACAATTACGTTTGTACAAAAAACCAAACCACGAAAG
CATATACTCACACACTGCATATACAGGGCTGGCCGATGCGCAGGGTCCTC
TGGCCGCTGCTCTACACGCTGACGGACCCGAGCCGCCAAGCCACAAGCAC
AATGGACGCCCGGGTTCTTATGGCAAGCGTACGCGAAGAAATTCTACGCC
CATTGGGGCTCTGCCCTCCCTGGGACAAAGACAACCTGGACCACCTTGGC
CAACCAGGAGGGGAATCTGGGGATCCCAAGCACACGGATATACTCGCCGC
TGATGCGGTGACGGGGGGGTCCGGAGGTATGGAGCTTGCACGGCGTAATG
CGGCGAACATGGCTGCAAAGATAAGATCTTCGGTTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig587:4125..4913-

>mRNA_H-paniculata_contig587.13479.1 ID=mRNA_H-paniculata_contig587.13479.1|Name=mRNA_H-paniculata_contig587.13479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig587:4125..4913- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTCTGCTGCTCTGCTGAGCTCTGAGGAGTCATGGTTCAAAGTCTC
CGTCACGTGCAACCCGTGGGAGTTGTTTTCTGCTGCTCTGCTGAGCTCTG
AGGAGTCATGGTTCAAAGTCTCCGTCACGTGCAACCCGTGGGAGGGCTGG
CCGATGCGCAGGGTCCTCTGGCCGCTGCTCTACACGCTGACGGACCCGAG
CCGCCAAGCCACAAGCACAATGGACGCCCGGGTTCTTATGGCAAGCGTAC
GCGAAGAAATTCTACGCCCATTGGGGCTCTGCCCTCCCTGGGACAAAGAC
AACCTGGACCACCTTGGCCAACCAGGAGGGGAATCTGGGGATCCCAAGCA
CACGGATATACTCGCCGCTGATGCGGTGACGGGGGGGTCCGGAGGTATGG
AGCTTGCACGGCGTAATGCGGCGAACATGGCTGCAAAGATAAGATCTTCG
GTTGGGGGCTGGCCGATGCGCAGGGTCCTCTGGCCGCTGCTCTACACGCT
GACGGACCCGAGCCGCCAAGCCACAAGCACAATGGACGCCCGGGTTCTTA
TGGCAAGCGTACGCGAAGAAATTCTACGCCCATTGGGGCTCTGCCCTCCC
TGGGACAAAGACAACCTGGACCACCTTGGCCAACCAGGAGGGGAATCTGG
GGATCCCAAGCACACGGATATACTCGCCGCTGATGCGGTGACGGGGGGGT
CCGGAGGTATGGAGCTTGCACGGCGTAATGCGGCGAACATGGCTGCAAAG
ATAAGATCTTCGGTTGGG
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