mRNA_H-paniculata_contig58688.13474.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 56.6 bits (135), Expect = 2.410e-7 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 4 EIWICDNGATKHMTHNSDFLFNYQEC-DGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLG 237
++WI D+GA++HMTH S+++ N Q D H L DG + + G G + +Q D + + L V ++P L+ +L S+G
Sbjct: 286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A6G0W5N4_9STRA (gag_pre-integrs domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5N4_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.580e-6 Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 10 WICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFG 255
WI D+GA H N+ + N + DG R A+G +PIEG G ++L+ + V + L V +IP + +L SL + + G
Sbjct: 325 WILDSGACDHYCKNAAWFTNLRPHDGAVRAANGEDMPIEGCGTVVLEMNTTAGIVKVTLDDVWYIPTIQFNLFSLPRVTERG 406
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME) HSP 1 Score: 53.9 bits (128), Expect = 1.890e-6 Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 10 WICDNGATKHMTHNSDFLFNYQECDGHE-RLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFG 255
WI D+G HMTHN DFL N+Q+ D + L D + ++G G + + + ++ LT V ++P L +L+SL + G
Sbjct: 68 WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSVQIATH---DRMIKMLTNVRYVPELKRNLISLNELDKSG 147
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C) HSP 1 Score: 50.8 bits (120), Expect = 2.660e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 264
I D+GA+ HM + + N + GH +A+G+R+PI GVG L L F DS+A+ ++P + +LLS+ K +D G EY
Sbjct: 400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFASNLLSV-KRSDNGGEY 473
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B) HSP 1 Score: 50.8 bits (120), Expect = 2.700e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 264
I D+GA+ HM + + N + GH +A+G+R+PI GVG L L F DS+A+ ++P + +LLS+ K +D G EY
Sbjct: 415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90) HSP 1 Score: 50.8 bits (120), Expect = 2.710e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 264
I D+GA+ HM + + N + GH +A+G+R+PI GVG L L F DS+A+ ++P + +LLS+ K +D G EY
Sbjct: 414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH) HSP 1 Score: 50.8 bits (120), Expect = 2.730e-5 Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGK 240
+ D+GA+ HM NS+ L N + GH +A+G+++PIEG+G L L F DS+A F+P + +LLS+ +
Sbjct: 330 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKR 396
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH) HSP 1 Score: 50.8 bits (120), Expect = 2.740e-5 Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGK 240
+ D+GA+ HM NS+ L N + GH +A+G+++PIEG+G L L F DS+A F+P + +LLS+ +
Sbjct: 343 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKR 409
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME) HSP 1 Score: 50.1 bits (118), Expect = 3.170e-5 Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 4 EIWICDNGATKHMTHNSDFLFNYQECD-GHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGK 240
+ WI D+ T HMTHN DFL N+Q+ D G L D ++G + + + ++ LT V ++P L +L+SLG+
Sbjct: 54 DAWIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGTCSVQITTH---DKMIRILTNVRYVPKLKCNLISLGE 130
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3) HSP 1 Score: 49.3 bits (116), Expect = 9.140e-5 Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFAD 249
I D+GA+ HM + + N + GH +A+G+R+PI GVG L L F DS+A+ ++P + +LLS+ + D
Sbjct: 419 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSVKRCTD 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58688.13474.1 >prot_H-paniculata_contig58688.13474.1 ID=prot_H-paniculata_contig58688.13474.1|Name=mRNA_H-paniculata_contig58688.13474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp MEIWICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQback to top mRNA from alignment at H-paniculata_contig58688:31..297- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58688.13474.1 ID=mRNA_H-paniculata_contig58688.13474.1|Name=mRNA_H-paniculata_contig58688.13474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig58688:31..297- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58688:31..297- >mRNA_H-paniculata_contig58688.13474.1 ID=mRNA_H-paniculata_contig58688.13474.1|Name=mRNA_H-paniculata_contig58688.13474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig58688:31..297- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |