mRNA_H-paniculata_contig58688.13474.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58688.13474.1
Unique NamemRNA_H-paniculata_contig58688.13474.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 56.6 bits (135), Expect = 2.410e-7
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHNSDFLFNYQEC-DGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLG 237
            ++WI D+GA++HMTH S+++ N Q   D H  L DG +  + G G + +Q   D + +   L  V ++P L+ +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A6G0W5N4_9STRA (gag_pre-integrs domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5N4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.580e-6
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   10 WICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFG 255
            WI D+GA  H   N+ +  N +  DG  R A+G  +PIEG G ++L+    +  V + L  V +IP +  +L SL +  + G
Sbjct:  325 WILDSGACDHYCKNAAWFTNLRPHDGAVRAANGEDMPIEGCGTVVLEMNTTAGIVKVTLDDVWYIPTIQFNLFSLPRVTERG 406          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 53.9 bits (128), Expect = 1.890e-6
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   10 WICDNGATKHMTHNSDFLFNYQECDGHE-RLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFG 255
            WI D+G   HMTHN DFL N+Q+ D  +  L D +   ++G G + +      + ++  LT V ++P L  +L+SL +    G
Sbjct:   68 WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSVQIATH---DRMIKMLTNVRYVPELKRNLISLNELDKSG 147          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI000BBEF31C (uncharacterized protein LOC111199942 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBEF31C)

HSP 1 Score: 50.8 bits (120), Expect = 2.660e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 264
            I D+GA+ HM  +   + N +   GH  +A+G+R+PI GVG L L F  DS+A+        ++P  + +LLS+ K +D G EY
Sbjct:  400 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFASNLLSV-KRSDNGGEY 473          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 50.8 bits (120), Expect = 2.700e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 264
            I D+GA+ HM  +   + N +   GH  +A+G+R+PI GVG L L F  DS+A+        ++P  + +LLS+ K +D G EY
Sbjct:  415 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 50.8 bits (120), Expect = 2.710e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEY 264
            I D+GA+ HM  +   + N +   GH  +A+G+R+PI GVG L L F  DS+A+        ++P  + +LLS+ K +D G EY
Sbjct:  414 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: Q9FWZ5_ARATH (Putative retroelement polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FWZ5_ARATH)

HSP 1 Score: 50.8 bits (120), Expect = 2.730e-5
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGK 240
            + D+GA+ HM  NS+ L N +   GH  +A+G+++PIEG+G L L F  DS+A         F+P  + +LLS+ +
Sbjct:  330 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKR 396          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 50.8 bits (120), Expect = 2.740e-5
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGK 240
            + D+GA+ HM  NS+ L N +   GH  +A+G+++PIEG+G L L F  DS+A         F+P  + +LLS+ +
Sbjct:  343 VIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF--------FMPKFTSNLLSVKR 409          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: A0A5D3DBV2_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DBV2_CUCME)

HSP 1 Score: 50.1 bits (118), Expect = 3.170e-5
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHNSDFLFNYQECD-GHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGK 240
            + WI D+  T HMTHN DFL N+Q+ D G   L D     ++G   + +      + ++  LT V ++P L  +L+SLG+
Sbjct:   54 DAWIMDSRCTFHMTHNLDFLINFQKSDRGTILLGDNGTCDVKGTCSVQITTH---DKMIRILTNVRYVPKLKCNLISLGE 130          
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Match: UPI0006AB2FB3 (uncharacterized protein LOC106407804 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB2FB3)

HSP 1 Score: 49.3 bits (116), Expect = 9.140e-5
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQFRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFAD 249
            I D+GA+ HM  +   + N +   GH  +A+G+R+PI GVG L L F  DS+A+        ++P  + +LLS+ +  D
Sbjct:  419 IIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSVKRCTD 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58688.13474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME2.410e-735.44Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A6G0W5N4_9STRA1.580e-634.15gag_pre-integrs domain-containing protein n=2 Tax=... [more]
A0A5A7U112_CUCME1.890e-633.73Retrovirus-related Pol polyprotein from transposon... [more]
UPI000BBEF31C2.660e-538.10uncharacterized protein LOC111199942 n=1 Tax=Brass... [more]
UPI000BBE966B2.700e-538.10uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC902.710e-538.10uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
Q9FWZ5_ARATH2.730e-538.16Putative retroelement polyprotein n=1 Tax=Arabidop... [more]
A0A178U605_ARATH2.740e-538.16ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
A0A5D3DBV2_CUCME3.170e-535.00Retrovirus-related Pol polyprotein from transposon... [more]
UPI0006AB2FB39.140e-535.44uncharacterized protein LOC106407804 n=1 Tax=Brass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58688contigH-paniculata_contig58688:31..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.6572578-CDS-H-paniculata_contig58688:30..2971622930638.6572578-CDS-H-paniculata_contig58688:30..297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58688 31..297 -
1691481384.3599284-CDS-H-paniculata_contig58688:30..2971691481384.3599284-CDS-H-paniculata_contig58688:30..297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58688 31..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58688.13474.1prot_H-paniculata_contig58688.13474.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58688 31..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58688.13474.1

>prot_H-paniculata_contig58688.13474.1 ID=prot_H-paniculata_contig58688.13474.1|Name=mRNA_H-paniculata_contig58688.13474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MEIWICDNGATKHMTHNSDFLFNYQECDGHERLADGNRLPIEGVGMLLLQ
FRFDSEAVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYR
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mRNA from alignment at H-paniculata_contig58688:31..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58688.13474.1 ID=mRNA_H-paniculata_contig58688.13474.1|Name=mRNA_H-paniculata_contig58688.13474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig58688:31..297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA TTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGGCATGAACGCCTTG CAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGCTCCTTCAA TTTCGATTTGACTCCGAGGCTGTTTTGATGAAGTTAACTCAGGTTGCGTT CATTCCACTTCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGGACT TTGGTCATGAATATAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig58688:31..297-

>mRNA_H-paniculata_contig58688.13474.1 ID=mRNA_H-paniculata_contig58688.13474.1|Name=mRNA_H-paniculata_contig58688.13474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig58688:31..297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA
TTCAGATTTTCTTTTTAATTACCAGGAATGTGATGGGCATGAACGCCTTG
CAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGCTCCTTCAA
TTTCGATTTGACTCCGAGGCTGTTTTGATGAAGTTAACTCAGGTTGCGTT
CATTCCACTTCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGGACT
TTGGTCATGAATATAGGATGGAGATCTGGATTTGTGATAATGGTGCAACG
AAACACATGACCCATAATTCAGATTTTCTTTTTAATTACCAGGAATGTGA
TGGGCATGAACGCCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTG
GCATGCTGCTCCTTCAATTTCGATTTGACTCCGAGGCTGTTTTGATGAAG
TTAACTCAGGTTGCGTTCATTCCACTTCTCAGTCATCACCTTCTATCTCT
AGGGAAATTCGCGGACTTTGGTCATGAATATAGG
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