mRNA_H-paniculata_contig58681.13472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58681.13472.1
Unique NamemRNA_H-paniculata_contig58681.13472.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 98.6 bits (244), Expect = 1.170e-21
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C AC KGK  +Q     R  R   PLE+VHTDIAGP D  S GG+R+ + F+DD+SR   +Y L++KSEA   L++ +    + +G  +K L SD+GG+YT K F  FC E+GI
Sbjct:  364 CEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGI 477          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA)

HSP 1 Score: 92.0 bits (227), Expect = 1.660e-21
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPL-DKSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C  C  GK  ++   N    R  +PL+L+HTD+ GP+   SFG  R+ + F+DDYSR   VY L++KSEA    K+ +    + +G  IK + SD+GG++T K+F+ +C E+GI
Sbjct:   20 CEGCVFGKQPRKSFPNEASFRAKKPLQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGI 133          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.460e-21
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKR----LGSDQGGKYTGKSFRLFCAENGI 339
            C  C++ K +K+       ER  EPLELVHTD+ GP++ +S GG+R+AI F DDY+R R VYT+R+KSE+   LK+  +D +  +  R  +    L SD GG+YTG  F+ FC  +GI
Sbjct:    5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGI 122          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA)

HSP 1 Score: 95.9 bits (237), Expect = 7.610e-21
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C  C  GK S++  +  R  R T PLELV++D+ GP+  +S  GSR+ I+F+DDY+RM  VY L+ KSEA  A K  +  V R +G  IK L +D+GG++    F+ FC ENGI
Sbjct:  159 CEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGI 272          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 92.0 bits (227), Expect = 1.140e-20
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVA------RANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C+ C++ K +K+       ER  EPLELVHTD+ GP++ +S GG+R+AI F DDY+R R VY ++ KS++   LK+  +D+       + N LR  R  SD GG+YTG  F+ FC  +GI
Sbjct:   37 CATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGVDFKNFCKNHGI 154          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A0V0H6H2_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H6H2_SOLCH)

HSP 1 Score: 92.0 bits (227), Expect = 1.440e-20
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C +C  GK SK+     +  R +  LELVH D+ GP+  +S GGSR+ ++F DDYSRM  +Y L+ KSE     K+ +  V R +G R+K L +D+GG++  K F  FC ENGI
Sbjct:   45 CESCVYGKQSKKCFPISKSWRASVCLELVHADLCGPMSVESLGGSRYFLLFTDDYSRMSWIYFLKFKSETFDNFKKFKSFVERQSGCRLKTLRTDRGGEFMSKEFSSFCEENGI 158          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A2I0WQY0_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WQY0_9ASPA)

HSP 1 Score: 94.7 bits (234), Expect = 1.920e-20
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLDK-SFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C AC  GK  ++        R  +PLEL+HTD+ GP+   S G S + ++F+DD+SR   VY L+QKSE     K+ +  V + +GL+IK + SD+GG++T K F+ FC  NGI
Sbjct:  299 CEACLLGKHFRKSFPRESSSRAQKPLELIHTDVCGPIKPCSLGKSNYFLLFIDDFSRKTWVYFLKQKSEVFGIFKKFKAAVEKESGLKIKAMRSDRGGEFTSKEFQEFCEANGI 412          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 94.7 bits (234), Expect = 2.530e-20
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPL-DKSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C  C  GK+ ++P  N +  R   PLEL+HTD+ GP+ ++S GG+++ I F+DDYSRM  VY LR KS      K+ +  V   +G  +K+L SD+GG+YT   F  +C++ G+
Sbjct:  408 CEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 521          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 94.7 bits (234), Expect = 2.530e-20
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPL-DKSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C  C  GK+ ++P  N +  R   PLEL+HTD+ GP+ ++S GG+++ I F+DDYSRM  VY LR KS      K+ +  V   +G  +K+L SD+GG+YT   F  +C++ G+
Sbjct:  100 CEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 213          
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.320e-20
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVA------RANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
            C  C++ K +K+       ER  EPLELVHTD+ GP++ +S GG+R+AI F DDY+R R VY ++ KSE+   LK+  +D+       + N LR  R  SD GG+YTG  F+ FC  +GI
Sbjct:   57 CGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGIDFKNFCKNHGI 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3BY51_HIBSY1.170e-2146.49Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A2I0V7V6_9ASPA1.660e-2140.35Retrovirus-related Pol polyprotein from transposon... [more]
W7T9C2_9STRA3.460e-2144.92Copia-like retrotransposable element (Fragment) n=... [more]
A0A2H9ZU53_9ASPA7.610e-2145.61Retrovirus-related Pol polyprotein from transposon... [more]
K8YS61_NANGC1.140e-2043.33Retrovirus-related pol polyprotein from transposon... [more]
A0A0V0H6H2_SOLCH1.440e-2043.86Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A2I0WQY0_9ASPA1.920e-2042.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1REW6_PRUDU2.530e-2041.23Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU2.530e-2041.23BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
W7TGQ6_9STRA3.320e-2044.17Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58681contigH-paniculata_contig58681:656..994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog3641.EOY08987
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.5394316-CDS-H-paniculata_contig58681:655..9941622930638.5394316-CDS-H-paniculata_contig58681:655..994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58681 656..994 +
1691481384.3144658-CDS-H-paniculata_contig58681:655..9941691481384.3144658-CDS-H-paniculata_contig58681:655..994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58681 656..994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58681.13472.1prot_H-paniculata_contig58681.13472.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58681 656..994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58681.13472.1

>prot_H-paniculata_contig58681.13472.1 ID=prot_H-paniculata_contig58681.13472.1|Name=mRNA_H-paniculata_contig58681.13472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLDKSFGGSRFAIIF
VDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYT
GKSFRLFCAENGI
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mRNA from alignment at H-paniculata_contig58681:656..994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58681.13472.1 ID=mRNA_H-paniculata_contig58681.13472.1|Name=mRNA_H-paniculata_contig58681.13472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig58681:656..994+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTGTCAGAAGGGGAAAGCGTCGAAGCAGCCTGTGATCAACTA TAGAGAAGAGCGGACGACCGAGCCGTTGGAGCTGGTGCACACTGACATAG CCGGACCGTTGGACAAGTCCTTCGGAGGATCTCGTTTCGCCATCATCTTC GTCGACGACTATAGCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTC AGAGGCGCCATGGGCCCTGAAGCAATCCGAGAGGGACGTAGCGAGGGCAA ACGGTTTGCGGATTAAGCGCCTTGGGTCGGATCAGGGAGGAAAATATACT GGGAAGTCTTTTAGGCTATTCTGCGCGGAAAATGGCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig58681:656..994+

>mRNA_H-paniculata_contig58681.13472.1 ID=mRNA_H-paniculata_contig58681.13472.1|Name=mRNA_H-paniculata_contig58681.13472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig58681:656..994+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGGCGTGTCAGAAGGGGAAAGCGTCGAAGCAGCCTGTGATCAACTA
TAGAGAAGAGCGGACGACCGAGCCGTTGGAGCTGGTGCACACTGACATAG
CCGGACCGTTGGACAAGTCCTTCGGAGGATCTCGTTTCGCCATCATCTTC
GTCGACGACTATAGCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTC
AGAGGCGCCATGGGCCCTGAAGCAATCCGAGAGGGACGTAGCGAGGGCAA
ACGGTTTGCGGATTAAGCGCCTTGGGTCGGATCAGGGAGGAAAATATACT
GGGAAGTCTTTTAGGCTATTCTGCGCGGAAAATGGCATCTGCTCGGCGTG
TCAGAAGGGGAAAGCGTCGAAGCAGCCTGTGATCAACTATAGAGAAGAGC
GGACGACCGAGCCGTTGGAGCTGGTGCACACTGACATAGCCGGACCGTTG
GACAAGTCCTTCGGAGGATCTCGTTTCGCCATCATCTTCGTCGACGACTA
TAGCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTCAGAGGCGCCAT
GGGCCCTGAAGCAATCCGAGAGGGACGTAGCGAGGGCAAACGGTTTGCGG
ATTAAGCGCCTTGGGTCGGATCAGGGAGGAAAATATACTGGGAAGTCTTT
TAGGCTATTCTGCGCGGAAAATGGCATC
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