mRNA_H-paniculata_contig58681.13472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 98.6 bits (244), Expect = 1.170e-21 Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C AC KGK +Q R R PLE+VHTDIAGP D S GG+R+ + F+DD+SR +Y L++KSEA L++ + + +G +K L SD+GG+YT K F FC E+GI
Sbjct: 364 CEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGI 477
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA) HSP 1 Score: 92.0 bits (227), Expect = 1.660e-21 Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPL-DKSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C C GK ++ N R +PL+L+HTD+ GP+ SFG R+ + F+DDYSR VY L++KSEA K+ + + +G IK + SD+GG++T K+F+ +C E+GI
Sbjct: 20 CEGCVFGKQPRKSFPNEASFRAKKPLQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGI 133
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.460e-21 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKR----LGSDQGGKYTGKSFRLFCAENGI 339
C C++ K +K+ ER EPLELVHTD+ GP++ +S GG+R+AI F DDY+R R VYT+R+KSE+ LK+ +D + + R + L SD GG+YTG F+ FC +GI
Sbjct: 5 CGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGI 122
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A2H9ZU53_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZU53_9ASPA) HSP 1 Score: 95.9 bits (237), Expect = 7.610e-21 Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C C GK S++ + R R T PLELV++D+ GP+ +S GSR+ I+F+DDY+RM VY L+ KSEA A K + V R +G IK L +D+GG++ F+ FC ENGI
Sbjct: 159 CEECLYGKQSRKSFLIGRTCRATHPLELVYSDLCGPMRIESLSGSRYFILFIDDYTRMNWVYFLKNKSEALEAFKIFKAFVERQSGYFIKVLRTDRGGEFLSHEFKAFCEENGI 272
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 92.0 bits (227), Expect = 1.140e-20 Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVA------RANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C+ C++ K +K+ ER EPLELVHTD+ GP++ +S GG+R+AI F DDY+R R VY ++ KS++ LK+ +D+ + N LR R SD GG+YTG F+ FC +GI
Sbjct: 37 CATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGVDFKNFCKNHGI 154
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A0V0H6H2_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H6H2_SOLCH) HSP 1 Score: 92.0 bits (227), Expect = 1.440e-20 Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C +C GK SK+ + R + LELVH D+ GP+ +S GGSR+ ++F DDYSRM +Y L+ KSE K+ + V R +G R+K L +D+GG++ K F FC ENGI
Sbjct: 45 CESCVYGKQSKKCFPISKSWRASVCLELVHADLCGPMSVESLGGSRYFLLFTDDYSRMSWIYFLKFKSETFDNFKKFKSFVERQSGCRLKTLRTDRGGEFMSKEFSSFCEENGI 158
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A2I0WQY0_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WQY0_9ASPA) HSP 1 Score: 94.7 bits (234), Expect = 1.920e-20 Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLDK-SFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C AC GK ++ R +PLEL+HTD+ GP+ S G S + ++F+DD+SR VY L+QKSE K+ + V + +GL+IK + SD+GG++T K F+ FC NGI
Sbjct: 299 CEACLLGKHFRKSFPRESSSRAQKPLELIHTDVCGPIKPCSLGKSNYFLLFIDDFSRKTWVYFLKQKSEVFGIFKKFKAAVEKESGLKIKAMRSDRGGEFTSKEFQEFCEANGI 412
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU) HSP 1 Score: 94.7 bits (234), Expect = 2.530e-20 Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPL-DKSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C C GK+ ++P N + R PLEL+HTD+ GP+ ++S GG+++ I F+DDYSRM VY LR KS K+ + V +G +K+L SD+GG+YT F +C++ G+
Sbjct: 408 CEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 521
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU) HSP 1 Score: 94.7 bits (234), Expect = 2.530e-20 Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPL-DKSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVARANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C C GK+ ++P N + R PLEL+HTD+ GP+ ++S GG+++ I F+DDYSRM VY LR KS K+ + V +G +K+L SD+GG+YT F +C++ G+
Sbjct: 100 CEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 213
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 3.320e-20 Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 1 CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLD-KSFGGSRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQSERDVA------RANGLRIKRLGSDQGGKYTGKSFRLFCAENGI 339
C C++ K +K+ ER EPLELVHTD+ GP++ +S GG+R+AI F DDY+R R VY ++ KSE+ LK+ +D+ + N LR R SD GG+YTG F+ FC +GI
Sbjct: 57 CGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLR--SDNGGEYTGIDFKNFCKNHGI 174 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58681.13472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58681.13472.1 >prot_H-paniculata_contig58681.13472.1 ID=prot_H-paniculata_contig58681.13472.1|Name=mRNA_H-paniculata_contig58681.13472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp CSACQKGKASKQPVINYREERTTEPLELVHTDIAGPLDKSFGGSRFAIIFback to top mRNA from alignment at H-paniculata_contig58681:656..994+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58681.13472.1 ID=mRNA_H-paniculata_contig58681.13472.1|Name=mRNA_H-paniculata_contig58681.13472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig58681:656..994+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58681:656..994+ >mRNA_H-paniculata_contig58681.13472.1 ID=mRNA_H-paniculata_contig58681.13472.1|Name=mRNA_H-paniculata_contig58681.13472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig58681:656..994+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |