prot_H-paniculata_contig5852.13456.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5852.13456.1
Unique Nameprot_H-paniculata_contig5852.13456.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length212
Homology
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: D7FV33_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV33_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 9.360e-102
Identity = 158/212 (74.53%), Postives = 170/212 (80.19%), Query Frame = 0
Query:    1 MKVTCAVAIAGMVGVSAFQVPMQAR-NLASRSSASRASTALPAVTILSDEEAMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVPDFCIPF 211
            MK+T A  +  +    AF +P   + ++A RSS S AS   P    LSD EAM SL+AIGGYDVET GKPLDPL L+KYI AETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDV SAN IDAL QT+P A AQIIGACGI EAAQWKHQQSG  TPFYDPFKGWPKTE QQE MKMRELKNGRAAMLCWASF+SA LI GSVPDF +PF
Sbjct:    1 MKITGATVLGMVASTQAFHMPANVKPSVARRSSTSLASALEP----LSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAAQWKHQQSGDTTPFYDPFKGWPKTEKQQEKMKMRELKNGRAAMLCWASFVSAALIPGSVPDFALPF 208          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7R9W903_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W903_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.950e-29
Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 0
Query:   60 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKH-----QQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVPD 206
            G DVET  K  DP   S YI A+  R+ E  + R AMLA VG+ +PQIFG FD+TDVT+ + I A  +  P   AQ I  CG +EA +++        +G   P  D  + +P  E  + AM+++ELKNGR AM+  AS+ SA  I GSVP 
Sbjct:   45 GIDVETGNKFFDPCGFSNYIPAKWAREAELANGRSAMLASVGWLWPQIFGTFDSTDVTTTDPIKAFSEADPQWWAQFIIFCGTIEAYKYRKGLEGKSSTGGGEPAVDWMRSYPADEEGRRAMELKELKNGRLAMIAVASYFSAHFIPGSVPS 196          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S1H281_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H281_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.880e-28
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 0
Query:   56 KAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSG-SETPFYDPFKGWPKT-----EAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            +++ G DVET  K  DP +LS++I AE  RK E  + R AMLA VG+ +P+ FG F + DVT+ + I+A++Q  P   AQ I  CG+ E  +++ +  G S T   +P   W KT     +A++E +++RELKNGR AML  ASF SA  I GSVP
Sbjct:   35 ESLVGMDVETGKKFFDPWELSQWIPAEHARKAELANGRSAMLATVGWFWPKFFGTFASDDVTTTDPIEAVMQADPQWWAQFIVLCGVAEFVKYQGELEGKSYTGDGEPVLDWTKTWSKLSDAKKEDIRLRELKNGRLAMLGIASFFSAHFIPGSVP 190          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S2RJJ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.650e-28
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 0
Query:   60 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            G   E   K  DPLKL++Y   + LR  ET + RVAMLA VG+ +PQIFG +    V + + I+ L      A AQ+I    + E   +KH+QSGS  P +DP +  PK E  ++AM  +ELKNGR AML +A+F+S   I G+VP
Sbjct:   48 GATTEVGNKAFDPLKLAQYRDFDELRACETRNGRVAMLASVGWVWPQIFGTWAGGPVKTVDPIETLSAVPVAAWAQMILLASVFEVIDFKHKQSGSTEPVWDPLQLLPKEEKAKKAMMEKELKNGRLAMLAFAAFVSEHFIPGAVP 193          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S0ASU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASU6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.450e-28
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 0
Query:   60 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKH-----QQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGS 203
            G D+E+ GK  DPL L+++I A+  R+ E  + R AMLA VG+ FP   G FD+ DVTS + + A+++  P   AQ +  CG  EA ++K        +G+  P  D  KG+PK E ++  M+++ELKNGR AM+  ASFLSA  I GS
Sbjct:   49 GVDLESGGKFFDPLNLAQWIPAKWARETELANGRSAMLATVGWFFPYTLGTFDSQDVTSTDPMGAIMEADPQWWAQFVILCGTFEAYKYKKALEGKSYTGNGEPVIDYLKGYPKEEDERRKMELKELKNGRLAMIGVASFLSAHFIPGS 197          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S2D2F8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2F8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.940e-28
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 0
Query:   60 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            G  VE   KP DPL L+ +   + +R  E  + RVAMLA VG+ +PQ+FG+F++ DVT+ + I A+ Q +P    Q+    G  E+ ++KH+ SG++ P +DP    PK   ++ A    ELKNGR AML  A++ SA  I GSVP
Sbjct:   59 GATVEVGKKPFDPLGLAAWRDFDEMRACELKNGRVAMLASVGWVWPQMFGLFESDDVTTTDPIAAITQVAPEGWIQMFLLAGCFESLEYKHKMSGTDKPLWDPLDLMPKDPVKKAAKMESELKNGRLAMLSVAAYASAHFIPGSVP 204          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S0PIU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PIU0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.870e-27
Identity = 73/186 (39.25%), Postives = 106/186 (56.99%), Query Frame = 0
Query:   27 LASRSSASRASTALPAVTILSDEEAMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQS-------GSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            LA  +SA   +TA    T L   +A    + + G  VET GK  DP  +S+Y+ A+  R+ E  + R AMLA VG+ +PQ+ G FD+ DVT+ + IDA++Q  P   AQ I  CG++E   WK+ ++       G   P  D  K +P   A++  ++ +ELKN R AM+ +ASF+SA  I GSVP
Sbjct:    9 LAGTASAFAPNTAPKVTTSL---KAASDFEGMTGISVETGGKFFDPWGVSEYMPADWAREVELSNGRSAMLATVGWFWPQVVGTFDSNDVTTTDPIDAIMQADPQWWAQFIIFCGVIE--NWKYNKAKEGKSYTGGGEPAVDWMKLYPSDPAKRLELEEKELKNARLAMIGFASFVSAHFIPGSVP 189          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S2R2M8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2M8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.500e-27
Identity = 68/151 (45.03%), Postives = 86/151 (56.95%), Query Frame = 0
Query:   60 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSE-----TPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            G DVET  K  DP  LS YI A+  R+ E  + R AMLA VGY FP  FG FD+TDVT+ + IDA+LQ  P   AQ I  CG  E  +++    G        P  D    +PK EA++  M ++ELKNGR AM+  A F+S   I G+VP
Sbjct:   39 GIDVETGKKFFDPWGLSGYIPAKWAREAELSNGRSAMLATVGYVFPAYFGTFDSTDVTTTDPIDAILQADPQWWAQFILLCGAFEGVKYRCALEGKTFTGIGEPAVDYANLYPKEEAKRADMHLKELKNGRLAMIGIAGFVSNHFIPGAVP 189          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A1Z5KCJ7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCJ7_FISSO)

HSP 1 Score: 107 bits (268), Expect = 1.080e-25
Identity = 75/208 (36.06%), Postives = 112/208 (53.85%), Query Frame = 0
Query:    4 TCAVAIAGMVGVSAFQVPMQARNLASRSSASRASTALPAVTILSDEEAMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPF-----KGWPKTEAQQEA-MKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            T   A+  +  VSAFQ P          SAS   ++LPA            + ++ G   E   +  DPL+L ++  AE LRK E  + R AMLA VG+ +P+I G FD+ DVT+ + IDA+LQ  P   AQ +  CG++E  +++ +  G       P      K W K +  ++A M+++ELKNGR AM+ +AS+++A  I GSVP
Sbjct:    3 TATAALLSLGCVSAFQGP----------SASVKKSSLPATAA--------EIASLPGISNECGNRVFDPLELGQWADAEFLRKAELSNGRSAMLANVGWFWPKIVGTFDSDDVTTTDPIDAILQADPQWWAQFLLLCGVIEGVKYRAELEGKSYTGDGPAAIDWAKQWDKLDKTKKADMRLKELKNGRLAMIGFASYVAAYFIPGSVP 192          
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: B7G8E5_PHATC (Fucoxanthin chlorophyll a/c protein, deviant n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8E5_PHATC)

HSP 1 Score: 100 bits (250), Expect = 5.730e-23
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 0
Query:   60 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGS----ETP-FYDPFKGWPKTEA-QQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 205
            G D+ET  K  DP+ L+++  A+ LRK E  + R AMLA VG+ +P+I G FD+ DVT+ + I A+ +      AQ    CG++EA +++ +  G     E P   D  K W K  A Q+E+M+++ELKNGR AML +AS+++   I GSVP
Sbjct:   42 GVDIETGKKIFDPVGLAQWAPADFLRKAELSNGRSAMLANVGWFWPKIVGTFDSQDVTTTDPIKAIAEADLQWWAQFFVFCGMLEAVKYRGELEGKSYTGEGPAVIDWAKQWDKLNADQKESMRLKELKNGRLAMLGFASYVANYYIPGSVP 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV33_ECTSI9.360e-10274.53Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7R9W903_9STRA9.950e-2943.42Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1H281_9STRA1.880e-2844.23Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2RJJ1_9STRA2.650e-2843.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0ASU6_9STRA3.450e-2842.95Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2D2F8_9STRA4.940e-2841.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PIU0_9STRA1.870e-2739.25Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S2R2M8_9STRA2.500e-2745.03Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5KCJ7_FISSO1.080e-2536.06Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7G8E5_PHATC5.730e-2341.45Fucoxanthin chlorophyll a/c protein, deviant n=3 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 60..206
e-value: 3.1E-22
score: 81.3
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 66..197
e-value: 1.6E-23
score: 84.0
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 31..205
NoneNo IPR availablePANTHERPTHR21649:SF63coord: 31..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..211
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.454
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 71..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5852contigH-paniculata_contig5852:1639..5468 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5852.13456.1mRNA_H-paniculata_contig5852.13456.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5852 694..5627 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5852.13456.1 ID=prot_H-paniculata_contig5852.13456.1|Name=mRNA_H-paniculata_contig5852.13456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MKVTCAVAIAGMVGVSAFQVPMQARNLASRSSASRASTALPAVTILSDEE
AMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACV
GYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKH
QQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLI
AGSVPDFCIPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln