mRNA_H-paniculata_contig5852.13456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5852.13456.1
Unique NamemRNA_H-paniculata_contig5852.13456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: D7FV33_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV33_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 1.540e-96
Identity = 158/212 (74.53%), Postives = 170/212 (80.19%), Query Frame = 1 
Query:  160 MKVTCAVAIAGMVGVSAFQVPMQAR-NLASRSSASRASTALPAVTILSDEEAMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVPDFCIPF 792
            MK+T A  +  +    AF +P   + ++A RSS S AS   P    LSD EAM SL+AIGGYDVET GKPLDPL L+KYI AETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDV SAN IDAL QT+P A AQIIGACGI EAAQWKHQQSG  TPFYDPFKGWPKTE QQE MKMRELKNGRAAMLCWASF+SA LI GSVPDF +PF
Sbjct:    1 MKITGATVLGMVASTQAFHMPANVKPSVARRSSTSLASALEP----LSDAEAMASLEAIGGYDVETLGKPLDPLHLAKYIPAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVQSANGIDALFQTAPEAWAQIIGACGIAEAAQWKHQQSGDTTPFYDPFKGWPKTEKQQEKMKMRELKNGRAAMLCWASFVSAALIPGSVPDFALPF 208
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7R9W903_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W903_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.570e-26
Identity = 66/152 (43.42%), Postives = 88/152 (57.89%), Query Frame = 1 
Query:  337 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKH-----QQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVPD 777
            G DVET  K  DP   S YI A+  R+ E  + R AMLA VG+ +PQIFG FD+TDVT+ + I A  +  P   AQ I  CG +EA +++        +G   P  D  + +P  E  + AM+++ELKNGR AM+  AS+ SA  I GSVP 
Sbjct:   45 GIDVETGNKFFDPCGFSNYIPAKWAREAELANGRSAMLASVGWLWPQIFGTFDSTDVTTTDPIKAFSEADPQWWAQFIIFCGTIEAYKYRKGLEGKSSTGGGEPAVDWMRSYPADEEGRRAMELKELKNGRLAMIAVASYFSAHFIPGSVPS 196
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S1H281_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H281_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.140e-26
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 1 
Query:  325 KAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSG-SETPFYDPFKGWPKT-----EAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            +++ G DVET  K  DP +LS++I AE  RK E  + R AMLA VG+ +P+ FG F + DVT+ + I+A++Q  P   AQ I  CG+ E  +++ +  G S T   +P   W KT     +A++E +++RELKNGR AML  ASF SA  I GSVP
Sbjct:   35 ESLVGMDVETGKKFFDPWELSQWIPAEHARKAELANGRSAMLATVGWFWPKFFGTFASDDVTTTDPIEAVMQADPQWWAQFIVLCGVAEFVKYQGELEGKSYTGDGEPVLDWTKTWSKLSDAKKEDIRLRELKNGRLAMLGIASFFSAHFIPGSVP 190
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S2RJJ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ1_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.120e-25
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1 
Query:  337 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            G   E   K  DPLKL++Y   + LR  ET + RVAMLA VG+ +PQIFG +    V + + I+ L      A AQ+I    + E   +KH+QSGS  P +DP +  PK E  ++AM  +ELKNGR AML +A+F+S   I G+VP
Sbjct:   48 GATTEVGNKAFDPLKLAQYRDFDELRACETRNGRVAMLASVGWVWPQIFGTWAGGPVKTVDPIETLSAVPVAAWAQMILLASVFEVIDFKHKQSGSTEPVWDPLQLLPKEEKAKKAMMEKELKNGRLAMLAFAAFVSEHFIPGAVP 193
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S0ASU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASU6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.410e-25
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1 
Query:  337 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKH-----QQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGS 768
            G D+E+ GK  DPL L+++I A+  R+ E  + R AMLA VG+ FP   G FD+ DVTS + + A+++  P   AQ +  CG  EA ++K        +G+  P  D  KG+PK E ++  M+++ELKNGR AM+  ASFLSA  I GS
Sbjct:   49 GVDLESGGKFFDPLNLAQWIPAKWARETELANGRSAMLATVGWFFPYTLGTFDSQDVTSTDPMGAIMEADPQWWAQFVILCGTFEAYKYKKALEGKSYTGNGEPVIDYLKGYPKEEDERRKMELKELKNGRLAMIGVASFLSAHFIPGS 197
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S2D2F8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2F8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.030e-25
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 1 
Query:  337 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            G  VE   KP DPL L+ +   + +R  E  + RVAMLA VG+ +PQ+FG+F++ DVT+ + I A+ Q +P    Q+    G  E+ ++KH+ SG++ P +DP    PK   ++ A    ELKNGR AML  A++ SA  I GSVP
Sbjct:   59 GATVEVGKKPFDPLGLAAWRDFDEMRACELKNGRVAMLASVGWVWPQMFGLFESDDVTTTDPIAAITQVAPEGWIQMFLLAGCFESLEYKHKMSGTDKPLWDPLDLMPKDPVKKAAKMESELKNGRLAMLSVAAYASAHFIPGSVP 204
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S0PIU0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PIU0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.630e-25
Identity = 73/186 (39.25%), Postives = 106/186 (56.99%), Query Frame = 1 
Query:  238 LASRSSASRASTALPAVTILSDEEAMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQS-------GSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            LA  +SA   +TA    T L   +A    + + G  VET GK  DP  +S+Y+ A+  R+ E  + R AMLA VG+ +PQ+ G FD+ DVT+ + IDA++Q  P   AQ I  CG++E   WK+ ++       G   P  D  K +P   A++  ++ +ELKN R AM+ +ASF+SA  I GSVP
Sbjct:    9 LAGTASAFAPNTAPKVTTSL---KAASDFEGMTGISVETGGKFFDPWGVSEYMPADWAREVELSNGRSAMLATVGWFWPQVVGTFDSNDVTTTDPIDAIMQADPQWWAQFIIFCGVIE--NWKYNKAKEGKSYTGGGEPAVDWMKLYPSDPAKRLELEEKELKNARLAMIGFASFVSAHFIPGSVP 189
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A7S2R2M8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2M8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.610e-25
Identity = 68/151 (45.03%), Postives = 86/151 (56.95%), Query Frame = 1 
Query:  337 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSE-----TPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            G DVET  K  DP  LS YI A+  R+ E  + R AMLA VGY FP  FG FD+TDVT+ + IDA+LQ  P   AQ I  CG  E  +++    G        P  D    +PK EA++  M ++ELKNGR AM+  A F+S   I G+VP
Sbjct:   39 GIDVETGKKFFDPWGLSGYIPAKWAREAELSNGRSAMLATVGYVFPAYFGTFDSTDVTTTDPIDAILQADPQWWAQFILLCGAFEGVKYRCALEGKTFTGIGEPAVDYANLYPKEEAKRADMHLKELKNGRLAMIGIAGFVSNHFIPGAVP 189
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: A0A1Z5KCJ7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCJ7_FISSO)

HSP 1 Score: 108 bits (270), Expect = 1.450e-23
Identity = 75/208 (36.06%), Postives = 112/208 (53.85%), Query Frame = 1 
Query:  169 TCAVAIAGMVGVSAFQVPMQARNLASRSSASRASTALPAVTILSDEEAMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGSETPFYDPF-----KGWPKTEAQQEA-MKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            T   A+  +  VSAFQ P          SAS   ++LPA            + ++ G   E   +  DPL+L ++  AE LRK E  + R AMLA VG+ +P+I G FD+ DVT+ + IDA+LQ  P   AQ +  CG++E  +++ +  G       P      K W K +  ++A M+++ELKNGR AM+ +AS+++A  I GSVP
Sbjct:    3 TATAALLSLGCVSAFQGP----------SASVKKSSLPATAA--------EIASLPGISNECGNRVFDPLELGQWADAEFLRKAELSNGRSAMLANVGWFWPKIVGTFDSDDVTTTDPIDAILQADPQWWAQFLLLCGVIEGVKYRAELEGKSYTGDGPAAIDWAKQWDKLDKTKKADMRLKELKNGRLAMIGFASYVAAYFIPGSVP 192
[Close]
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Match: B7G8E5_PHATC (Fucoxanthin chlorophyll a/c protein, deviant n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8E5_PHATC)

HSP 1 Score: 100 bits (250), Expect = 8.360e-21
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 1 
Query:  337 GYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACVGYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKHQQSGS----ETP-FYDPFKGWPKTEA-QQEAMKMRELKNGRAAMLCWASFLSADLIAGSVP 774
            G D+ET  K  DP+ L+++  A+ LRK E  + R AMLA VG+ +P+I G FD+ DVT+ + I A+ +      AQ    CG++EA +++ +  G     E P   D  K W K  A Q+E+M+++ELKNGR AML +AS+++   I GSVP
Sbjct:   42 GVDIETGKKIFDPVGLAQWAPADFLRKAELSNGRSAMLANVGWFWPKIVGTFDSQDVTTTDPIKAIAEADLQWWAQFFVFCGMLEAVKYRGELEGKSYTGEGPAVIDWAKQWDKLNADQKESMRLKELKNGRLAMLGFASYVANYYIPGSVP 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5852.13456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV33_ECTSI1.540e-9674.53Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7R9W903_9STRA4.570e-2643.42Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1H281_9STRA8.140e-2644.23Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2RJJ1_9STRA1.120e-2543.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0ASU6_9STRA1.410e-2542.95Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2D2F8_9STRA2.030e-2541.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PIU0_9STRA6.630e-2539.25Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S2R2M8_9STRA8.610e-2545.03Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5KCJ7_FISSO1.450e-2336.06Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7G8E5_PHATC8.360e-2141.45Fucoxanthin chlorophyll a/c protein, deviant n=3 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5852contigH-paniculata_contig5852:694..5627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.1
Seed ortholog evalue2.6e-80
Seed eggNOG ortholog2880.D7FV33
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2ESA5@1,2SUWS@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-12_004990.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1740
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5852.13456.1prot_H-paniculata_contig5852.13456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5852 1639..5468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930636.9249249-UTR-H-paniculata_contig5852:693..16381622930636.9249249-UTR-H-paniculata_contig5852:693..1638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5852 694..1638 -
1691481383.560073-UTR-H-paniculata_contig5852:693..16381691481383.560073-UTR-H-paniculata_contig5852:693..1638Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5852 694..1638 -
1622930636.982954-UTR-H-paniculata_contig5852:5468..56271622930636.982954-UTR-H-paniculata_contig5852:5468..5627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5852 5469..5627 -
1691481383.6070933-UTR-H-paniculata_contig5852:5468..56271691481383.6070933-UTR-H-paniculata_contig5852:5468..5627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5852 5469..5627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930636.9421535-CDS-H-paniculata_contig5852:1638..19581622930636.9421535-CDS-H-paniculata_contig5852:1638..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5852 1639..1958 -
1691481383.575963-CDS-H-paniculata_contig5852:1638..19581691481383.575963-CDS-H-paniculata_contig5852:1638..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5852 1639..1958 -
1622930636.9582725-CDS-H-paniculata_contig5852:4318..44841622930636.9582725-CDS-H-paniculata_contig5852:4318..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5852 4319..4484 -
1691481383.5863054-CDS-H-paniculata_contig5852:4318..44841691481383.5863054-CDS-H-paniculata_contig5852:4318..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5852 4319..4484 -
1622930636.9713802-CDS-H-paniculata_contig5852:5318..54681622930636.9713802-CDS-H-paniculata_contig5852:5318..5468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5852 5319..5468 -
1691481383.597166-CDS-H-paniculata_contig5852:5318..54681691481383.597166-CDS-H-paniculata_contig5852:5318..5468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5852 5319..5468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5852.13456.1

>prot_H-paniculata_contig5852.13456.1 ID=prot_H-paniculata_contig5852.13456.1|Name=mRNA_H-paniculata_contig5852.13456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MKVTCAVAIAGMVGVSAFQVPMQARNLASRSSASRASTALPAVTILSDEE
AMESLKAIGGYDVETAGKPLDPLKLSKYISAETLRKYETVHCRVAMLACV
GYAFPQIFGMFDATDVTSANAIDALLQTSPLALAQIIGACGIVEAAQWKH
QQSGSETPFYDPFKGWPKTEAQQEAMKMRELKNGRAAMLCWASFLSADLI
AGSVPDFCIPF*
back to top

mRNA from alignment at H-paniculata_contig5852:694..5627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5852.13456.1 ID=mRNA_H-paniculata_contig5852.13456.1|Name=mRNA_H-paniculata_contig5852.13456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4934bp|location=Sequence derived from alignment at H-paniculata_contig5852:694..5627- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAACTCTCCCCCAGTCCCCTGTATTGTCTGGGAACAAGTGAAGCAC
CTCAGCTTCCGCTGCTCAGTTTAAACTGTCGTGAATCGTTGTCCGCTTGA
AGAACACATACACTACAGTACAGTAGTAGCTTTTTCCACTCATATCTCTT
GCTACTAAGATGAAGGTCACGTGCGCGGTGGCAATCGCGGGAATGGTCGG
AGTGTCGGCTTTCCAGGTGCCCATGCAGGCCCGGAATTTGGCTTCTCGCT
CCAGTGCCTCGCGCGCGAGCACCGCTTTGCCGGCCGTAACAATCTTGTCC
GACGAGGAGGTGAGGCAAGGGAATACAGCTTGTGTTCTGCTATGCAATCA
CTTGCTAGCTTCTAGACAATGTCAGCGTGTGCGTGTATATGTCTATGAGC
TGCCGAAGGTTTATCGTCTTCTTTGAACCTGAACACTGATGGGTGCAGAT
GCTGGGTCGTGACATGTACGTGTGCGTTTGGAAGCGCGATTGAAGTTTAA
CGAGATTACGGGGTATGCTGGACATGCGTACTTTTTTTCGGTGAACAGCA
AGGGTAATGTAATAGAGGGAGGCGTGTTCAATACTTCTAAATGTCGTCTA
GGGGAGCAAGCGGGGGAGATGAGGGATGCTAATTGGATGTGGTGCCGTTC
ACCGAAGGCATGTTTTTCTTGTGGGCAGGATAGGGCAGGTGCCAAATTTT
TGTTGGACATGCTGAGATTCTGGGGAAGAGAACATGTGTCGATCAACTTC
TTTTGCTTATGATGGATTATATGCCTGTACTTGTGTGCCTGAGTTTGTTG
CCGTGCTGGATGGATGAGTCCCATGTAAATACCAAGAGGACCGGTCATTA
GTGCTCTTGAAATGTAGGATGCCAGGAGACAACATTACAAGCGGTTCAAA
CTGTTGAAACCCAAAACTAACTACTCAATATTTTCTCATGCTGTCTGTAC
TATCTTCACTGTCGATTGTAGCTGTAAGCGATAGTTTTGAAGTCCCGCAC
CTGCATGCCCTTCACCACAGAGCTGATCCATATACATGAACCAGTGAACA
ATCCGTTGTACGTATTCCTCTGTATCGTGTCGGATTGCCGATTTTGATGC
TCATGCGGTCCTTGCAACTTGATGGCACTTTCACGTTCCACAGGCCATGG
AATCGCTCAAGGCGATCGGGGGATATGACGTCGAGACGGCGGGTAAACCA
CTTGACCCCCTCAAGTTGTCCAAGTATATCTCAGCGGAGACCTTGCGGAA
GTACGAGACAGTGCACTGCAGAGTAGCGATGCTGGCGTGCGTAGGATACG
CCTTCCCCCGTGAGTGTGGTGACCCCTTCAATTTTTTTCGTTGACTGCTA
CGCCGCATGCAGCAAATTTATGAAAGCATCAAGCCTTTTCATACGATCGG
TCATTTCTTTCACAATTTCGACTGCTGCACAGCCTAGAGTTGAGCACATC
AAGCTTTTTCTGAATGACCGGCGTTCCTCACATGACTGACGTCAAACTGG
ATGAAAAGATTATGTGACCATCGGCGAAGTGGGGAGCAAAATGAAAACTC
TCACGCCCGTTTGAGAACTGCACGAAAACCTCACGTAACCGTCCACGAAC
GGGGCGGAAAAAGTAAACTCTGATGCACCCATCCGTGAACCGGGCGACAA
AATGGAATTAGCATGTGGTCATCCTTCAATATGTTCATGACTACAGTATT
TTGAGAATACACACGTAATTTGTCAGGGAGATGGTGGTATTTTCTATTAA
ATTACATTGTAATAAATTAAGCTTCATTAGATGGCCCGAGACTTGAACTC
TTGGATGCAATGCAGGCTTCCAGTCGCCATGTAGTCTGGACGTGAAGCAC
TGTATATTCGAAATCTCAGCACGCCACAAATGGTATTGGCACGTCTACTG
GATGTGACAGTCTTCACAGCCCATGCAGCTTGACCGATGAGTGCATGCGT
TAAATTTGCCTCCCCCTTTCCTTCGTGCCTGATCTTTGCTAATTCGCTGG
GGTTACCCTAAGGCCCTGTCTGAACCTCCCGCTACCAACGGAACGCAGCT
CTCTACGCTGAAGTCTCTTTGCCCAATACGTGATATGGTGGATAGACTTG
CAAGCAAAAAAAACAAATGAATGTCTCTCCCAGCTTGAAAGTACATGTGC
AATGTTTTGTGTTGGAGTTGTTCAAATGAAATGACAAACGGGTACTGCCC
AACTTGGCCATTAATTTTCACCAATAATAAATGTGATGGAACCATGAGTG
CATGATACAAATGGCAGATGAAAATGTCCGCGTTAAATTCCCAAGTTTAT
TTTTTCACGGTGGGATGTGTTCGTGTCATTTCATGACCTATGGTCACATA
TGAGGTCTTGTGTCCAATTTTGAGCCTATTGAACACGTCGCTATGCGAGG
GATGAGCCACAGTGGGTTTAGCCAAAACCTTGGGCTTGATATGTTCTGTT
CCAAAACCTTGTCTCAAGCAAACGTAGGTAGGAAAAGCTTGAGCCACATC
ATCAATTCGCAGTTCTTGACTTGCTCTCCACTTGCATTCTTAACCAGAAG
CTGCTCCTTGTCCGGAACTTCCATCCATTTTCACAACGTCAATCCCTTGC
AACTATTATATCTTTCCTCGGTGCCATCCCTTATCTGAAGTAGGCGCGTT
ATGGAAACCATTTGCGTGGATCTGCGCCTCGCCTTGTTACTTTTTTTGCG
TGGATCATGTATTCGCCGCTAGGGAGATTCCTATCATGGCCGTACTCCTC
CACCCCGTGTTCTCCGTATTCACCTACTCGCAAAATACAACTTGAGAAAC
TAAGAGATGACACCATTGGCGTGAACACTTGAAACAGGAACATCGAACCA
CCGCCGTTCAGACGGAGATTTCAGTCCAGTCTATGAAAGGCAGTACCATG
TAGTATCGACAGGTACTAAAAATGGTCCTGTTCACAACCAGTGCAACGAT
CCACGTTTGCTATCTAAAGCCTCTTCATCTCCGAAACGGGTTCCAACGCT
AGAATATTCCACGGATTAGTACTGAACTATCGCACCACGAAAATTCAGTT
CCTTCAGTTTCCAGCGCTAGAGTACACCGTGGCCCGCAAATGTGGGCTAG
AAGTATCTCAATATTCTCCCAGAATAGGCTGCAATTTTTACTTGAAAGAA
TTTCTAGTATTCTCACACTGAAACACTATCAGTGCCTCTTCCCACAATAT
TCAACACAGTACAGTGACAATGCTGCTCGATTGATGCTGTCGCACTATTT
GACATGTAACCAACAGAGAGTTTTTTTCAGTTGGGTGAGTCTGGCTGTAA
GCCGCGAGGCTCCTGCGGAAAAATAGGTGTCTCTCAGTTGTTGTCCTTGC
TTTACATGTTCAACCCTGGTGTGTGAAGCTCATTACTCCTTTGATGATTT
GATTTTGCGGCAAAATGTGTACGACTCCATACGAAAATCAACTCCGTAGA
GCTATGTTGTTATGTTTCAGTCTCGAAATTCACTGAGACCGGGTTGATAT
ACCCCTGATTGATTACGTTTTGCCGATGGGTGTATACTACTGCCCCCCCC
TCCCACAAACACCAACCCAACCCAACCAGGGACCTATTTACGCCCCTAAC
GTTTTCCTTGATACCGCCCGCTTGCCCACCGCGACTTCACTGCACGTGTA
CCATGTGCTGAACCGCCAGAAATATTTGGCATGTTCGATGCGACGGACGT
GACCTCCGCAAACGCCATCGACGCGCTCTTGCAGACCTCGCCCTTGGCGT
TGGCGCAGATCATCGGTGCTTGCGGCATCGTAGAGGCCGCTCAGTGGAAG
CACCAACAGTCGGGCTCGGAGACTCCCTTCTATGACCCCTTCAAGGGGTG
GCCCAAGACCGAGGCGCAACAGGAGGCGATGAAAATGCGGGAGCTGAAGA
ACGGGAGGGCGGCGATGCTCTGCTGGGCCTCGTTCCTCTCCGCGGACCTC
ATCGCGGGCTCTGTGCCTGACTTTTGCATCCCCTTTTAAAAAAGCTGACC
GTTTTTTCCATTTTTGTTTGTTCCAAGGAAGCTCGGTCATCATATAGGGT
ATTTTGCTACCAAAGCGGCCCACTCCGTTTCGCTGTCGGTTGGCTCTTGT
GATTGATTTGTCATTTGGCTGCCTGACCCGCACATCGTGGTTTGTTGATG
GAAGCCGTGGGATTGGTGGCGTTCCGACACGCTTTAGATTTTATCAAAAT
TTCACATTACAATACCACACGGGAACACCGTACCTGCTGGCCTAGATGGA
GTAAGTGGAAAATGGCGATGAGGGGTAGACCCGGGAGTTGTGTTTTGGTC
TTTGTGCCACGCCTAGAAACGCACGTGCCAGCACCACCAGTATATACGAT
GCTCTCTGGGGGTTTGCTCGTCGGGGGTATCATGCTGTCGGTTTCGAGCG
TATTTTTTTTGTTTGCGTCGGTAGAAAGGTGGTTTGGTAGTGTAGTTGTG
TACATGATCTGAGCTTGGTTTGAGGTTTCGAAATCGAGACAGCAAGCGGG
CTGCGATCACTTAAGTTGTCAGCACTTTAGCGAAGAGGAGACTGATGACG
CACCAACCGTTACAACAAGAACTGTCTACCAGCCACTTTTCTCCTTATCC
GTGTCAATCCAACTCCCGTCAAGTGTAGAACGAGCCGCGTTGTGTCCACG
TTTTGAAGTTAATTGGCGCCGGGTCACGCAAGCTCGTAGTGGACGGTGGA
GGATCAAACGGCGAGTCAGGATGATACTCAGTCATCCTACGGTAGGGAGG
TTTACGTGCTAAACGAAGGCCGCTTCGCAAAAGTCGTGTCACAAAGGAAA
TAACAAACACCTGATCTCTTTCTCAAACCGGCTCCTTGGTTAAACAAAGT
GGCTCAAGTACCCCCCAACATGATGACTCGTTCGTATGTTTTTCCCGAGT
ATTTGCGCTGTTGCCTTCCTTGGACGATTATTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5852:694..5627-

>mRNA_H-paniculata_contig5852.13456.1 ID=mRNA_H-paniculata_contig5852.13456.1|Name=mRNA_H-paniculata_contig5852.13456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig5852:694..5627- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTCACGTGCGCGGTGGCAATCGCGGGAATGGTCGGAGTGTCGGC
TTTCCAGGTGCCCATGCAGGCCCGGAATTTGGCTTCTCGCTCCAGTGCCT
CGCGCGCGAGCACCGCTTTGCCGGCCGTAACAATCTTGTCCGACGAGGAG
ATGAAGGTCACGTGCGCGGTGGCAATCGCGGGAATGGTCGGAGTGTCGGC
TTTCCAGGTGCCCATGCAGGCCCGGAATTTGGCTTCTCGCTCCAGTGCCT
CGCGCGCGAGCACCGCTTTGCCGGCCGTAACAATCTTGTCCGACGAGGAG
GCCATGGAATCGCTCAAGGCGATCGGGGGATATGACGTCGAGACGGCGGG
TAAACCACTTGACCCCCTCAAGTTGTCCAAGTATATCTCAGCGGAGACCT
TGCGGAAGTACGAGACAGTGCACTGCAGAGTAGCGATGCTGGCGTGCGTA
GGATACGCCTTCCCCCGCCATGGAATCGCTCAAGGCGATCGGGGGATATG
ACGTCGAGACGGCGGGTAAACCACTTGACCCCCTCAAGTTGTCCAAGTAT
ATCTCAGCGGAGACCTTGCGGAAGTACGAGACAGTGCACTGCAGAGTAGC
GATGCTGGCGTGCGTAGGATACGCCTTCCCCCAAATATTTGGCATGTTCG
ATGCGACGGACGTGACCTCCGCAAACGCCATCGACGCGCTCTTGCAGACC
TCGCCCTTGGCGTTGGCGCAGATCATCGGTGCTTGCGGCATCGTAGAGGC
CGCTCAGTGGAAGCACCAACAGTCGGGCTCGGAGACTCCCTTCTATGACC
CCTTCAAGGGGTGGCCCAAGACCGAGGCGCAACAGGAGGCGATGAAAATG
CGGGAGCTGAAGAACGGGAGGGCGGCGATGCTCTGCTGGGCCTCGTTCCT
CTCCGCGGACCTCATCGCGGGCTCTGTGCCTGACTTTTGCATCCCCTTTT
AAAAATATTTGGCATGTTCGATGCGACGGACGTGACCTCCGCAAACGCCA
TCGACGCGCTCTTGCAGACCTCGCCCTTGGCGTTGGCGCAGATCATCGGT
GCTTGCGGCATCGTAGAGGCCGCTCAGTGGAAGCACCAACAGTCGGGCTC
GGAGACTCCCTTCTATGACCCCTTCAAGGGGTGGCCCAAGACCGAGGCGC
AACAGGAGGCGATGAAAATGCGGGAGCTGAAGAACGGGAGGGCGGCGATG
CTCTGCTGGGCCTCGTTCCTCTCCGCGGACCTCATCGCGGGCTCTGTGCC
TGACTTTTGCATCCCCTTTTAA
back to top