mRNA_H-paniculata_contig58404.13446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 3.870e-18 Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDE-VSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+GLT+E +L + +SYKAL TSSAIYKD+ + I SPYA+L++ IAQ DS I EINPLE+AE+FGN+GGFW
Sbjct: 207 GIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNITGIASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFW 285
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 9.450e-18 Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDE-VSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+GLT+E +L + +SYKAL SSA+YKD+ + I SPYA+L++ IAQ DS I EINPLE+AE+FGN+GGFW
Sbjct: 14 GIGLTKEDKLYEDDTASYKALEISSALYKDKRTDNITGIASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFW 92
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.220e-16 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+GLT +I+ ++SSYKA+S +S +YKD+ DI PYA L++ + Q+ DSW I E +P E AEI GNIGGFW
Sbjct: 48 GIGLTNQIKYTGDIISSYKAVSINSGVYKDQAD--GDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFW 123
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 6.470e-15 Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+GLT +I+ VSSYKA+S +S +YKD+ DI PYA L++ + Q+ DSW I E +P E AEI GNIGGFW
Sbjct: 226 GIGLTNQIKYAADDVSSYKAVSINSGVYKDQADA--DITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFW 301
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 2.340e-13 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+GLT + +L + SSYKAL T+ +K+ V+ +I PYAYL++ + Q+ DSW I E NP E AE+FGNIGGFW
Sbjct: 166 GVGLTNQNKLMEDDQSSYKALFTNFGHHKNVVNP--NITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFW 241
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 3.690e-13 Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
GMG+T E +L + V++ KALS S+A +KD+V+ I+ PYA L++ QEP+S I E +P ++AE+FGN+GGFW
Sbjct: 212 GMGVTIEERLGEEPVATNKALSVSTATHKDKVNAA--IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFW 287
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 4.040e-13 Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+G+T E +L + + KALS S+A KDEV+ I PYA L++ + QEP+S I E++PL++AE+FGN+GGFW
Sbjct: 251 GIGVTTEDKLGQEPIVNNKALSVSTATVKDEVNPA--IVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFW 326
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 5.040e-13 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+GLT EI+L + S KALS S+A K EV+ I PYA L++ + Q P+S I E++PL++AE+FGN+GGFW
Sbjct: 211 GIGLTTEIKLGQEPIVSNKALSVSTATVKHEVNPA--IVKPYAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFW 286
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.760e-12 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+G+T E +L + + KALS S+A KDEV+ I PYA L++ QEP+S I E++PL++AE+FGN+GGFW
Sbjct: 283 GIGVTIEDKLGQEPIVNNKALSVSTATVKDEVNPA--IVKPYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFW 358
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 2.920e-12 Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
G+G+T E +L + V++ KALS S+A ++D+V+ I+ PYA L++ QEP+S I E +P ++AE+FGN+GGFW
Sbjct: 169 GIGVTIEERLGEEPVATNKALSVSTATHRDKVNAA--IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFW 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58404.13446.1 >prot_H-paniculata_contig58404.13446.1 ID=prot_H-paniculata_contig58404.13446.1|Name=mRNA_H-paniculata_contig58404.13446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp MGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQback to top mRNA from alignment at H-paniculata_contig58404:164..818+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58404.13446.1 ID=mRNA_H-paniculata_contig58404.13446.1|Name=mRNA_H-paniculata_contig58404.13446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig58404:164..818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58404:164..818+ >mRNA_H-paniculata_contig58404.13446.1 ID=mRNA_H-paniculata_contig58404.13446.1|Name=mRNA_H-paniculata_contig58404.13446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig58404:164..818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |