mRNA_H-paniculata_contig58404.13446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58404.13446.1
Unique NamemRNA_H-paniculata_contig58404.13446.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.870e-18
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDE-VSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+GLT+E +L +   +SYKAL TSSAIYKD+     + I SPYA+L++ IAQ  DS   I EINPLE+AE+FGN+GGFW
Sbjct:  207 GIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNITGIASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFW 285          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 9.450e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDE-VSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+GLT+E +L +   +SYKAL  SSA+YKD+     + I SPYA+L++ IAQ  DS   I EINPLE+AE+FGN+GGFW
Sbjct:   14 GIGLTKEDKLYEDDTASYKALEISSALYKDKRTDNITGIASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFW 92          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.220e-16
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+GLT +I+    ++SSYKA+S +S +YKD+     DI  PYA L++ + Q+ DSW  I E +P E AEI GNIGGFW
Sbjct:   48 GIGLTNQIKYTGDIISSYKAVSINSGVYKDQAD--GDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFW 123          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 6.470e-15
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+GLT +I+     VSSYKA+S +S +YKD+     DI  PYA L++ + Q+ DSW  I E +P E AEI GNIGGFW
Sbjct:  226 GIGLTNQIKYAADDVSSYKAVSINSGVYKDQADA--DITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFW 301          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.340e-13
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+GLT + +L +   SSYKAL T+   +K+ V+   +I  PYAYL++ + Q+ DSW  I E NP E AE+FGNIGGFW
Sbjct:  166 GVGLTNQNKLMEDDQSSYKALFTNFGHHKNVVNP--NITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFW 241          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 3.690e-13
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            GMG+T E +L +  V++ KALS S+A +KD+V+    I+ PYA L++   QEP+S   I E +P ++AE+FGN+GGFW
Sbjct:  212 GMGVTIEERLGEEPVATNKALSVSTATHKDKVNAA--IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFW 287          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.040e-13
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+G+T E +L    + + KALS S+A  KDEV+    I  PYA L++ + QEP+S   I E++PL++AE+FGN+GGFW
Sbjct:  251 GIGVTTEDKLGQEPIVNNKALSVSTATVKDEVNPA--IVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFW 326          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.040e-13
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+GLT EI+L    + S KALS S+A  K EV+    I  PYA L++ + Q P+S   I E++PL++AE+FGN+GGFW
Sbjct:  211 GIGLTTEIKLGQEPIVSNKALSVSTATVKHEVNPA--IVKPYAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFW 286          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.760e-12
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+G+T E +L    + + KALS S+A  KDEV+    I  PYA L++   QEP+S   I E++PL++AE+FGN+GGFW
Sbjct:  283 GIGVTIEDKLGQEPIVNNKALSVSTATVKDEVNPA--IVKPYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFW 358          
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.920e-12
Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 GMGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQEPDSWTTILEINPLEVAEIFGNIGGFW 234
            G+G+T E +L +  V++ KALS S+A ++D+V+    I+ PYA L++   QEP+S   I E +P ++AE+FGN+GGFW
Sbjct:  169 GIGVTIEERLGEEPVATNKALSVSTATHRDKVNAA--IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFW 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58404.13446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FU23_ECTSI3.870e-1858.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FU22_ECTSI9.450e-1855.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF84_9PHAE1.220e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH8_ECTSI6.470e-1551.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNQ1_ECTSI2.340e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMD2_ECTSI3.690e-1347.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K474_9PHAE4.040e-1347.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN97_9PHAE5.040e-1348.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD1_ECTSI2.760e-1247.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K6D1_9PHAE2.920e-1244.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58404contigH-paniculata_contig58404:164..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58404.13446.1prot_H-paniculata_contig58404.13446.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58404 167..818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930635.775563-UTR-H-paniculata_contig58404:163..1661622930635.775563-UTR-H-paniculata_contig58404:163..166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58404 164..166 +
1691481383.0420485-UTR-H-paniculata_contig58404:163..1661691481383.0420485-UTR-H-paniculata_contig58404:163..166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58404 164..166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930635.7927258-CDS-H-paniculata_contig58404:166..2781622930635.7927258-CDS-H-paniculata_contig58404:166..278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58404 167..278 +
1691481383.0548413-CDS-H-paniculata_contig58404:166..2781691481383.0548413-CDS-H-paniculata_contig58404:166..278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58404 167..278 +
1622930635.8194754-CDS-H-paniculata_contig58404:699..8181622930635.8194754-CDS-H-paniculata_contig58404:699..818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58404 700..818 +
1691481383.0628386-CDS-H-paniculata_contig58404:699..8181691481383.0628386-CDS-H-paniculata_contig58404:699..818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58404 700..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58404.13446.1

>prot_H-paniculata_contig58404.13446.1 ID=prot_H-paniculata_contig58404.13446.1|Name=mRNA_H-paniculata_contig58404.13446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MGLTEEIQLNDTVVSSYKALSTSSAIYKDEVSVTSDIESPYAYLTINIAQ
EPDSWTTILEINPLEVAEIFGNIGGFW
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mRNA from alignment at H-paniculata_contig58404:164..818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58404.13446.1 ID=mRNA_H-paniculata_contig58404.13446.1|Name=mRNA_H-paniculata_contig58404.13446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig58404:164..818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATGGGTCTTACCGAGGAGATTCAACTGAATGACACTGTTGTCTCCTC GTATAAGGCGCTGTCGACATCATCAGCAATTTACAAAGATGAGGTGAGCG TTACATCTGACATCGGTGAAAATCGCCAAACCATTTGCGATAATAGGCAA TACTGACATTGGAGATCTCGCTTGATTCGTTAGTGAATAGGAAGGGAGGA TGTACAAGGGATCGTGGCTTAACTGGCATGTGTATGCTTTCTTTCGCCAC TAGAGTATACGCCATGCCGATGTTTGTATGCTTATGCAGCCCGCACTGTC ACCCACTGTCGCCTCTAGGAACTGACTTACAAAATACCCTTATACAGTAG CATATTTATTCCCTCTTCAACCGTCCGGTCCTTGTGTCTTGAATTGTACG TATTGGTTGCGTATGGACGACGCGATTACTAGCCCGCCCACGCGTCTGTA ATTCCAACCAGGAGCCTCCGCACGTTTCTTTTTACTGTCCATCCGCAACC GCCCCCGTCAGCGCGACGCAGACATAACGGGGATAGAGAGCCCGTACGCA TACCTCACGATCAACATAGCCCAGGAACCAGACTCGTGGACAACAATTCT AGAAATCAACCCTCTAGAGGTCGCTGAGATCTTCGGCAACATTGGCGGAT TTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig58404:164..818+

>mRNA_H-paniculata_contig58404.13446.1 ID=mRNA_H-paniculata_contig58404.13446.1|Name=mRNA_H-paniculata_contig58404.13446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig58404:164..818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCTTACCGAGGAGATTCAACTGAATGACACTGTTGTCTCCTCGTA
TAAGGCGCTGTCGACATCATCAGCAATTTACAAAGATGAGGTGAGCGTTA
CATCTGACATCGATGGGTCTTACCGAGGAGATTCAACTGAATGACACTGT
TGTCTCCTCGTATAAGGCGCTGTCGACATCATCAGCAATTTACAAAGATG
AGGTGAGCGTTACATCTGACATCGAGAGCCCGTACGCATACCTCACGATC
AACATAGCCCAGGAACCAGACTCGTGGACAACAATTCTAGAAATCAACCC
TCTAGAGGTCGCTGAGATCTTCGGCAACATTGGCGGATTTTGGAGAGCCC
GTACGCATACCTCACGATCAACATAGCCCAGGAACCAGACTCGTGGACAA
CAATTCTAGAAATCAACCCTCTAGAGGTCGCTGAGATCTTCGGCAACATT
GGCGGATTTTGG
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