prot_H-paniculata_contig5812.13414.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5812.13414.1
Unique Nameprot_H-paniculata_contig5812.13414.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length151
Homology
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.520e-19
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 0
Query:    6 QGPCHDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTIDN 99
            Q P  DCGGT+AP+CRLQ I MV AIA E +L+  QLD  T F  A + E V+V+M PGYE  +   + LV +  KSL  L QSP +W  TID+
Sbjct:  374 QVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDS 467          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.390e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    6 QGPCHDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENG 72
            Q P  DCGGTYAP+CRLQ I M+  IA ++NLE  Q+D +T F  A + E V+V+  PG+E  D++G
Sbjct:  782 QVPGLDCGGTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDG 848          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6A3B769_HIBSY (Indole-3-acetic acid-amido synthetase GH3.17 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3B769_HIBSY)

HSP 1 Score: 67.8 bits (164), Expect = 2.620e-10
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   11 DCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNW 93
            D   T++ + +    ++VL +A     E W +D N  F N  + E++++K +PG+E+V  +G PLV +  K+LY LRQ+P NW
Sbjct:  771 DFTDTFSLVVKFHTFNVVLTLAVTNGWELWHVDINNAFLNGDLGEDIFMKQLPGFEQVVADGSPLVYKLQKALYGLRQAPRNW 853          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6A3AGV4_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AGV4_HIBSY)

HSP 1 Score: 67.0 bits (162), Expect = 4.810e-10
Identity = 28/86 (32.56%), Postives = 53/86 (61.63%), Query Frame = 0
Query:   15 TYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTIDNI 100
            T++P+ +   ++++L++A   N E   +D N  F N  ++E V++K  PG+E+   +G PLV +  K+LY L+Q+P NW   + ++
Sbjct: 1056 TFSPVVKFTTLNVILSVAVANNWELRHVDINNAFLNGDLKEAVFMKQPPGFEQTTADGEPLVCQLQKALYGLKQTPRNWYAKLKDV 1141          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A075AZK3_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AZK3_ROZAC)

HSP 1 Score: 63.9 bits (154), Expect = 1.720e-9
Identity = 31/88 (35.23%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   11 DCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTID 98
            D   TY+P+CR+Q I +++AIA E+N++  Q+D +T + N+ + +E+Y++   G++   E+G   V +  K+LY L+Q+   W+  ID
Sbjct:   74 DFEKTYSPVCRIQSIRILMAIAVEFNMKIHQMDVDTAYLNSKIDKEIYMRFPEGFKM--EHGGGKVWKLKKALYGLKQAGRQWNLHID 159          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A699QJX9_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699QJX9_TANCI)

HSP 1 Score: 61.2 bits (147), Expect = 3.500e-9
Identity = 30/87 (34.48%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   11 DCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTI 97
            D   ++AP+ R++ IH+ +A AT  N+  +Q+D  T F N  ++EEVYV    G+ ++D +      +  K+LY L+Q+P  W  T+
Sbjct:   38 DFEESFAPVARIEAIHIFIANATSRNINVYQMDVKTAFLNGDLKEEVYVSQPEGFVDLDHSTHVYCLK--KALYGLKQAPRAWYDTL 122          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A699UAV1_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699UAV1_TANCI)

HSP 1 Score: 61.2 bits (147), Expect = 5.620e-9
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   11 DCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNW 93
            D   ++AP+ RL+ IH+ LA A   N+  +Q+D  T F N  +REEVYV    G+  +D++    V +  K+LY L+Q+P  W
Sbjct:   38 DFEESFAPVARLEAIHIFLAYAAHKNMVVYQMDLKTAFFNGNLREEVYVSQPDGF--MDQDNPNHVYKLKKALYRLKQAPRAW 118          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY)

HSP 1 Score: 63.5 bits (153), Expect = 7.680e-9
Identity = 28/84 (33.33%), Postives = 51/84 (60.71%), Query Frame = 0
Query:   10 HDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNW 93
            +D    ++P+ +    ++VLA+A   + E   +D N  F N  + + V+++  PG+E+V ++G PLV +  ++LY LRQ+P NW
Sbjct:  979 YDFTDMFSPVLKFSTFNVVLALAVSNDWELRHVDVNNAFLNGDLDDVVFMEQPPGFEQVADDGTPLVCKLQRALYGLRQAPRNW 1062          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: A0A6G1DYR6_9ORYZ (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DYR6_9ORYZ)

HSP 1 Score: 60.8 bits (146), Expect = 1.290e-8
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 0
Query:   11 DCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTID 98
            D    +AP+ R++ +HM+LA+A         +D  + F N  ++EEVYV  +PG+   D     L  R  K+LY LRQ+P  W+  +D
Sbjct:   61 DFDEVFAPVARMESMHMLLALAAHERWTVHHMDVKSAFLNGDLKEEVYVSQLPGFVVNDSEQKVLCLR--KALYGLRQAPRAWNAKLD 146          
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Match: Q9SLF0_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SLF0_ARATH)

HSP 1 Score: 62.8 bits (151), Expect = 1.420e-8
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    2 LESEQGPCHDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRNAGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNW 93
            L ++Q    D G T+AP+ ++  + + L +A + N E  Q+D +  F +  +REEVY+K+ PG+E    N V    R  K+LY L+Q+P  W
Sbjct:  891 LGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKV---CRLRKALYGLKQAPRCW 979          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5812.13414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE8.520e-1951.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE3.390e-1250.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3B769_HIBSY2.620e-1036.14Indole-3-acetic acid-amido synthetase GH3.17 n=2 T... [more]
A0A6A3AGV4_HIBSY4.810e-1032.56Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A075AZK3_ROZAC1.720e-935.23Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A699QJX9_TANCI3.500e-934.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A699UAV1_TANCI5.620e-938.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3A122_HIBSY7.680e-933.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G1DYR6_9ORYZ1.290e-835.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9SLF0_ARATH1.420e-835.87Putative retroelement pol polyprotein n=1 Tax=Arab... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 7..101
e-value: 2.7E-15
score: 56.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5812contigH-paniculata_contig5812:4228..4680 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5812.13414.1mRNA_H-paniculata_contig5812.13414.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5812 3783..4813 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5812.13414.1 ID=prot_H-paniculata_contig5812.13414.1|Name=mRNA_H-paniculata_contig5812.13414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MLESEQGPCHDCGGTYAPLCRLQRIHMVLAIATEYNLESWQLDYNTGFRN
AGVREEVYVKMVPGYEEVDENGVPLVTRNLKSLYVLRQSPSNWSGTIDNI
WWRSASKASSRTHVSISTRRATSSSFRPCMSTTFYCSEKTSRFSSGSAKS
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2