mRNA_H-paniculata_contig57954.13387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57954.13387.1
Unique NamemRNA_H-paniculata_contig57954.13387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57954.13387.1 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.640e-12
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 2 
Query:   26 SDDNEARINQEVERRVRQEIA----QALEVDRQRRRGMGGAEYIDSEQQPAVAPQQGARTDQAATSSVEDIAHTIARARTGLNTPNLRVGTPLPGM-------FHVSQSSRIEPWTGEVKEKEDLQTKLLVFKSSMYALFGQEGVMEAIQCKTPIRIGREGVDVEEL 493
            ++D +ARIN+ VE RV+Q +A    Q  E +++      G+E+    QQ A  P        +A  +V+DIA T+A A T      L++     G          +++  R+ PW G  ++ ED Q +  +F S+M A+F QEGV E +     I +G EG+D+E+L
Sbjct:   13 AEDEDARINELVEMRVQQRLADMRRQQDEEEQRTENVRTGSEHETRHQQQAGRP--------SANPAVDDIARTLADALTS----RLQISPADTGRVPSSAATLRMTEVKRLAPWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDL 167
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BLAST of mRNA_H-paniculata_contig57954.13387.1 vs. uniprot
Match: A0A6H5JR49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR49_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.160e-10
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:  134 AEYIDSEQQPAVAPQQGARTDQAATS-----SVEDIAHTIARARTG-LNTPNLRVGT-PLPGMFHVSQSSRIEPWTGEVKEK-EDLQTKLLVFKSSMYALFGQEGVMEAIQCKTPIRIGREGVDVEEL 493
            AE   +E   +   +QGA   Q A S     S +D+ ++IA A  G L T +  +G  P  G   +++S R+ PW G  K++  DLQ KLL+FKSSM A F QEGV E +     I +G+ G ++ +L
Sbjct:   65 AEQQSTEDLRSGTEEQGAPHQQQAGSPSPNPSADDLTNSIANAIAGRLQTSSGDIGAVPHSGALRMTESRRVAPWDGVFKQEGNDLQQKLLIFKSSMVARFAQEGVHEVVMSDEDIPVGKHGANMAQL 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57954.13387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQW6_9PHAE2.640e-1232.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR49_9PHAE1.160e-1037.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57954contigH-paniculata_contig57954:500..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size494
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930628.7262745-UTR-H-paniculata_contig57954:499..5121622930628.7262745-UTR-H-paniculata_contig57954:499..512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57954 500..512 +
1691481379.8157916-UTR-H-paniculata_contig57954:499..5121691481379.8157916-UTR-H-paniculata_contig57954:499..512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57954 500..512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930628.7528183-CDS-H-paniculata_contig57954:512..9921622930628.7528183-CDS-H-paniculata_contig57954:512..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57954 513..992 +
1691481379.8258245-CDS-H-paniculata_contig57954:512..9921691481379.8258245-CDS-H-paniculata_contig57954:512..992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57954 513..992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57954.13387.1prot_H-paniculata_contig57954.13387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57954 513..992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57954.13387.1

>prot_H-paniculata_contig57954.13387.1 ID=prot_H-paniculata_contig57954.13387.1|Name=mRNA_H-paniculata_contig57954.13387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MSQISDDNEARINQEVERRVRQEIAQALEVDRQRRRGMGGAEYIDSEQQP
AVAPQQGARTDQAATSSVEDIAHTIARARTGLNTPNLRVGTPLPGMFHVS
QSSRIEPWTGEVKEKEDLQTKLLVFKSSMYALFGQEGVMEAIQCKTPIRI
GREGVDVEEL
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mRNA from alignment at H-paniculata_contig57954:500..992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57954.13387.1 ID=mRNA_H-paniculata_contig57954.13387.1|Name=mRNA_H-paniculata_contig57954.13387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=493bp|location=Sequence derived from alignment at H-paniculata_contig57954:500..992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGCAGGTCATGTCCCAAATCAGCGATGACAACGAGGCCCGTATCA
ACCAAGAGGTAGAACGAAGAGTTAGACAAGAGATCGCACAGGCCCTAGAA
GTTGACCGTCAACGGCGACGCGGCATGGGTGGGGCAGAATACATCGATAG
CGAACAACAGCCTGCGGTAGCACCTCAGCAAGGAGCGAGGACCGACCAAG
CGGCCACTTCATCCGTCGAAGACATCGCCCACACCATAGCACGAGCCAGA
ACGGGGCTCAACACACCAAATCTCAGGGTTGGTACGCCTCTTCCAGGCAT
GTTTCATGTCTCACAATCAAGTAGGATAGAACCATGGACTGGGGAAGTGA
AGGAAAAGGAGGATTTACAGACAAAATTATTAGTGTTCAAGTCGAGTATG
TACGCGCTTTTTGGCCAGGAAGGGGTCATGGAAGCTATTCAATGCAAGAC
TCCAATCAGGATTGGCAGGGAAGGTGTTGATGTGGAGGAACTT
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Coding sequence (CDS) from alignment at H-paniculata_contig57954:500..992+

>mRNA_H-paniculata_contig57954.13387.1 ID=mRNA_H-paniculata_contig57954.13387.1|Name=mRNA_H-paniculata_contig57954.13387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig57954:500..992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCAAATCAGCGATGACAACGAGGCCCGTATCAACCAAGAGGTAGA
ACGAAGAGTTAGACAAGAGATCGCACAGGCCCTAGAAGTTGACCGTCAAC
GGCGACGCGGCATGGGTGGGGCAGAATACATCGATAGCGAACAACAGCCT
GCGGTAGCACCTCAGCAAGGAGCGAGGACCGACCAAGCGGCCACTTCATC
CGTCGAAGACATCGCCCACACCATAGCACGAGCCAGAACGGGGCTCAACA
CACCAAATCTCAGGGTTGGTACGCCTCTTCCAGGCATGTTTCATGTCTCA
CAATCAAGTAGGATAGAACCATGGACTGGGGAAGTGAAGGAAAAGGAGGA
TTTACAGACAAAATTATTAGTGTTCAAGTCGAGTATGTACGCGCTTTTTG
GCCAGGAAGGGGTCATGGAAGCTATTCAATGCAAGACTCCAATCAGGATT
GGCAGGGAAGGTGTTGATGTGGAGGAACTTATGTCCCAAATCAGCGATGA
CAACGAGGCCCGTATCAACCAAGAGGTAGAACGAAGAGTTAGACAAGAGA
TCGCACAGGCCCTAGAAGTTGACCGTCAACGGCGACGCGGCATGGGTGGG
GCAGAATACATCGATAGCGAACAACAGCCTGCGGTAGCACCTCAGCAAGG
AGCGAGGACCGACCAAGCGGCCACTTCATCCGTCGAAGACATCGCCCACA
CCATAGCACGAGCCAGAACGGGGCTCAACACACCAAATCTCAGGGTTGGT
ACGCCTCTTCCAGGCATGTTTCATGTCTCACAATCAAGTAGGATAGAACC
ATGGACTGGGGAAGTGAAGGAAAAGGAGGATTTACAGACAAAATTATTAG
TGTTCAAGTCGAGTATGTACGCGCTTTTTGGCCAGGAAGGGGTCATGGAA
GCTATTCAATGCAAGACTCCAATCAGGATTGGCAGGGAAGGTGTTGATGT
GGAGGAACTT
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